EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007079 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 2765 bases
Position: chr7:2900766-2903530
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000014542	MMR_HSR1	PF01926.23	2.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000014542	-	1403	-	ENSCINP00000014542	460 (aa)	-	F6W9I8

Gene Model

Click here to download ENSCING00000007079's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007079's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007079	-	91	62.632	ENSG00000041802	LSG1	98	51.429	Homo_sapiens
ENSCING00000007079	-	90	66.667	ENSAPOG00000009694	lsg1	84	48.851	Acanthochromis_polyacanthus
ENSCING00000007079	-	99	61.538	ENSAMEG00000009343	LSG1	72	61.538	Ailuropoda_melanoleuca
ENSCING00000007079	-	97	47.961	ENSACIG00000012406	lsg1	84	39.444	Amphilophus_citrinellus
ENSCING00000007079	-	99	55.251	ENSAOCG00000016066	lsg1	84	48.948	Amphiprion_ocellaris
ENSCING00000007079	-	98	56.744	ENSAPEG00000003252	lsg1	84	48.948	Amphiprion_percula
ENSCING00000007079	-	92	60.204	ENSATEG00000011794	lsg1	83	54.321	Anabas_testudineus
ENSCING00000007079	-	92	61.929	ENSACAG00000004222	LSG1	69	61.929	Anolis_carolinensis
ENSCING00000007079	-	91	62.632	ENSANAG00000021153	LSG1	66	62.632	Aotus_nancymaae
ENSCING00000007079	-	94	59.184	ENSACLG00000000520	lsg1	77	53.012	Astatotilapia_calliptera
ENSCING00000007079	-	100	46.507	ENSAMXG00000008271	lsg1	85	41.176	Astyanax_mexicanus
ENSCING00000007079	-	97	62.632	ENSBTAG00000008461	LSG1	71	62.632	Bos_taurus
ENSCING00000007079	-	99	46.497	WBGene00016907	C53H9.2	94	47.859	Caenorhabditis_elegans
ENSCING00000007079	-	91	63.158	ENSCJAG00000013962	LSG1	66	63.158	Callithrix_jacchus
ENSCING00000007079	-	85	63.684	ENSCAFG00000013445	LSG1	64	63.684	Canis_familiaris
ENSCING00000007079	-	91	62.176	ENSCAFG00020002216	LSG1	66	62.176	Canis_lupus_dingo
ENSCING00000007079	-	99	61.579	ENSCHIG00000015769	LSG1	78	54.585	Capra_hircus
ENSCING00000007079	-	99	63.158	ENSTSYG00000001447	LSG1	71	63.158	Carlito_syrichta
ENSCING00000007079	-	91	58.115	ENSCAPG00000009856	LSG1	71	58.115	Cavia_aperea
ENSCING00000007079	-	91	62.632	ENSCCAG00000035744	LSG1	65	62.632	Cebus_capucinus
ENSCING00000007079	-	92	63.158	ENSCATG00000042060	LSG1	66	62.632	Cercocebus_atys
ENSCING00000007079	-	91	63.158	ENSCSAG00000008796	LSG1	60	63.158	Chlorocebus_sabaeus
ENSCING00000007079	-	99	56.039	ENSCPBG00000015941	LSG1	59	56.039	Chrysemys_picta_bellii
ENSCING00000007079	-	100	83.478	ENSCSAVG00000002514	-	100	79.132	Ciona_savignyi
ENSCING00000007079	-	91	62.632	ENSCANG00000030709	LSG1	66	62.632	Colobus_angolensis_palliatus
ENSCING00000007079	-	92	62.632	ENSCGRG00001019846	Lsg1	67	62.632	Cricetulus_griseus_chok1gshd
ENSCING00000007079	-	92	62.632	ENSCGRG00000014617	Lsg1	67	62.632	Cricetulus_griseus_crigri
ENSCING00000007079	-	94	48.898	ENSCSEG00000008522	lsg1	84	47.566	Cynoglossus_semilaevis
ENSCING00000007079	-	94	50.305	ENSCVAG00000002484	lsg1	84	49.143	Cyprinodon_variegatus
ENSCING00000007079	-	100	54.464	ENSDARG00000015352	lsg1	78	53.600	Danio_rerio
ENSCING00000007079	-	93	62.827	ENSDNOG00000006224	LSG1	67	62.827	Dasypus_novemcinctus
ENSCING00000007079	-	100	50.884	FBgn0266284	Ns3	84	51.081	Drosophila_melanogaster
ENSCING00000007079	-	82	69.892	ENSETEG00000003888	LSG1	60	70.213	Echinops_telfairi
ENSCING00000007079	-	85	46.809	ENSEBUG00000003119	lsg1	69	46.809	Eptatretus_burgeri
ENSCING00000007079	-	99	63.684	ENSEASG00005000678	LSG1	72	63.684	Equus_asinus_asinus
ENSCING00000007079	-	99	63.684	ENSECAG00000017659	LSG1	72	63.684	Equus_caballus
ENSCING00000007079	-	100	48.762	ENSELUG00000023973	lsg1	83	48.762	Esox_lucius
ENSCING00000007079	-	97	63.158	ENSFCAG00000024957	LSG1	70	63.158	Felis_catus
ENSCING00000007079	-	91	61.616	ENSFALG00000007210	LSG1	65	61.616	Ficedula_albicollis
ENSCING00000007079	-	87	69.880	ENSFDAG00000017373	LSG1	68	62.051	Fukomys_damarensis
ENSCING00000007079	-	96	56.808	ENSFHEG00000003680	lsg1	79	54.545	Fundulus_heteroclitus
ENSCING00000007079	-	87	62.209	ENSGMOG00000015834	lsg1	67	62.209	Gadus_morhua
ENSCING00000007079	-	93	62.827	ENSGALG00000007058	LSG1	62	62.827	Gallus_gallus
ENSCING00000007079	-	98	48.235	ENSGAFG00000015831	lsg1	76	53.419	Gambusia_affinis
ENSCING00000007079	-	97	53.138	ENSGACG00000009323	lsg1	74	53.097	Gasterosteus_aculeatus
ENSCING00000007079	-	91	62.105	ENSGGOG00000000520	LSG1	66	62.105	Gorilla_gorilla
ENSCING00000007079	-	94	59.184	ENSHBUG00000005659	lsg1	78	53.012	Haplochromis_burtoni
ENSCING00000007079	-	99	49.715	ENSHGLG00000017390	LSG1	83	49.905	Heterocephalus_glaber_female
ENSCING00000007079	-	99	49.526	ENSHGLG00100018587	LSG1	83	49.715	Heterocephalus_glaber_male
ENSCING00000007079	-	91	58.163	ENSHCOG00000016848	lsg1	69	58.163	Hippocampus_comes
ENSCING00000007079	-	100	48.399	ENSIPUG00000008631	lsg1	84	48.399	Ictalurus_punctatus
ENSCING00000007079	-	57	61.579	ENSSTOG00000010234	LSG1	54	61.579	Ictidomys_tridecemlineatus
ENSCING00000007079	-	89	67.857	ENSJJAG00000015513	Lsg1	70	59.898	Jaculus_jaculus
ENSCING00000007079	-	97	48.515	ENSKMAG00000009681	lsg1	84	48.077	Kryptolebias_marmoratus
ENSCING00000007079	-	97	50.612	ENSLBEG00000024261	lsg1	84	51.186	Labrus_bergylta
ENSCING00000007079	-	96	59.184	ENSLACG00000013399	LSG1	68	59.184	Latimeria_chalumnae
ENSCING00000007079	-	92	61.735	ENSLOCG00000004918	lsg1	70	61.735	Lepisosteus_oculatus
ENSCING00000007079	-	98	61.780	ENSLAFG00000012919	-	73	61.780	Loxodonta_africana
ENSCING00000007079	-	91	63.158	ENSMFAG00000039903	LSG1	65	62.632	Macaca_fascicularis
ENSCING00000007079	-	91	63.158	ENSMMUG00000010708	LSG1	66	63.158	Macaca_mulatta
ENSCING00000007079	-	91	63.158	ENSMNEG00000031538	LSG1	65	62.632	Macaca_nemestrina
ENSCING00000007079	-	91	63.158	ENSMLEG00000041184	LSG1	66	63.158	Mandrillus_leucophaeus
ENSCING00000007079	-	100	48.084	ENSMAMG00000000470	lsg1	84	48.084	Mastacembelus_armatus
ENSCING00000007079	-	94	59.184	ENSMZEG00005017865	lsg1	78	53.012	Maylandia_zebra
ENSCING00000007079	-	78	61.780	ENSMGAG00000007050	LSG1	62	61.780	Meleagris_gallopavo
ENSCING00000007079	-	99	61.579	ENSMAUG00000016976	Lsg1	74	61.579	Mesocricetus_auratus
ENSCING00000007079	-	99	61.579	ENSMICG00000049087	LSG1	72	61.579	Microcebus_murinus
ENSCING00000007079	-	93	60.825	ENSMOCG00000022136	Lsg1	67	60.825	Microtus_ochrogaster
ENSCING00000007079	-	97	53.390	ENSMMOG00000008884	lsg1	83	53.719	Mola_mola
ENSCING00000007079	-	96	47.893	ENSMODG00000019828	LSG1	70	47.893	Monodelphis_domestica
ENSCING00000007079	-	93	63.158	MGP_CAROLIEiJ_G0020648	Lsg1	68	63.158	Mus_caroli
ENSCING00000007079	-	99	63.684	ENSMUSG00000022538	Lsg1	73	63.684	Mus_musculus
ENSCING00000007079	-	91	63.158	MGP_PahariEiJ_G0016352	Lsg1	73	63.158	Mus_pahari
ENSCING00000007079	-	99	63.158	MGP_SPRETEiJ_G0021544	Lsg1	74	63.158	Mus_spretus
ENSCING00000007079	-	97	63.684	ENSMPUG00000003734	LSG1	70	63.684	Mustela_putorius_furo
ENSCING00000007079	-	97	61.780	ENSMLUG00000012548	LSG1	71	61.780	Myotis_lucifugus
ENSCING00000007079	-	99	47.681	ENSNGAG00000021872	Lsg1	83	47.681	Nannospalax_galili
ENSCING00000007079	-	99	63.158	ENSNLEG00000008293	LSG1	74	63.158	Nomascus_leucogenys
ENSCING00000007079	-	70	51.709	ENSMEUG00000009041	-	65	50.000	Notamacropus_eugenii
ENSCING00000007079	-	94	59.296	ENSONIG00000002635	lsg1	75	53.012	Oreochromis_niloticus
ENSCING00000007079	-	93	38.142	ENSOANG00000012742	LSG1	65	59.686	Ornithorhynchus_anatinus
ENSCING00000007079	-	97	58.937	ENSOCUG00000004817	LSG1	69	58.937	Oryctolagus_cuniculus
ENSCING00000007079	-	97	49.802	ENSORLG00000007695	lsg1	84	50.097	Oryzias_latipes
ENSCING00000007079	-	97	49.412	ENSORLG00020016286	lsg1	84	49.140	Oryzias_latipes_hni
ENSCING00000007079	-	97	50.202	ENSORLG00015012025	lsg1	83	50.295	Oryzias_latipes_hsok
ENSCING00000007079	-	97	49.304	ENSOMEG00000022379	lsg1	84	49.419	Oryzias_melastigma
ENSCING00000007079	-	99	57.477	ENSOGAG00000003475	LSG1	73	57.477	Otolemur_garnettii
ENSCING00000007079	-	97	60.733	ENSOARG00000020403	LSG1	71	60.733	Ovis_aries
ENSCING00000007079	-	92	62.304	ENSPPAG00000029271	LSG1	66	62.304	Pan_paniscus
ENSCING00000007079	-	97	60.914	ENSPPRG00000010281	LSG1	71	60.914	Panthera_pardus
ENSCING00000007079	-	97	63.158	ENSPTIG00000010789	LSG1	70	63.158	Panthera_tigris_altaica
ENSCING00000007079	-	92	61.780	ENSPTRG00000015760	LSG1	66	61.780	Pan_troglodytes
ENSCING00000007079	-	87	70.909	ENSPANG00000018249	LSG1	65	63.684	Papio_anubis
ENSCING00000007079	-	95	58.296	ENSPKIG00000002895	lsg1	84	50.094	Paramormyrops_kingsleyae
ENSCING00000007079	-	94	56.995	ENSPSIG00000009821	LSG1	73	56.995	Pelodiscus_sinensis
ENSCING00000007079	-	94	48.889	ENSPMGG00000000931	lsg1	83	47.879	Periophthalmus_magnuspinnatus
ENSCING00000007079	-	87	69.697	ENSPEMG00000012082	-	67	63.158	Peromyscus_maniculatus_bairdii
ENSCING00000007079	-	94	62.887	ENSPMAG00000007451	lsg1	67	62.887	Petromyzon_marinus
ENSCING00000007079	-	91	58.929	ENSPCIG00000013890	LSG1	57	58.929	Phascolarctos_cinereus
ENSCING00000007079	-	92	59.184	ENSPFOG00000021882	lsg1	75	53.419	Poecilia_formosa
ENSCING00000007079	-	92	58.673	ENSPLAG00000019536	lsg1	74	52.991	Poecilia_latipinna
ENSCING00000007079	-	92	58.586	ENSPMEG00000017281	lsg1	75	52.966	Poecilia_mexicana
ENSCING00000007079	-	92	54.077	ENSPREG00000006048	lsg1	81	53.815	Poecilia_reticulata
ENSCING00000007079	-	91	63.684	ENSPPYG00000014425	LSG1	71	63.684	Pongo_abelii
ENSCING00000007079	-	74	60.377	ENSPCAG00000005511	LSG1	53	60.377	Procavia_capensis
ENSCING00000007079	-	99	61.053	ENSPCOG00000012360	LSG1	71	61.053	Propithecus_coquereli
ENSCING00000007079	-	94	59.184	ENSPNYG00000021994	lsg1	77	53.012	Pundamilia_nyererei
ENSCING00000007079	-	94	59.694	ENSPNAG00000015533	lsg1	69	59.694	Pygocentrus_nattereri
ENSCING00000007079	-	93	63.684	ENSRNOG00000001727	Lsg1	67	63.684	Rattus_norvegicus
ENSCING00000007079	-	91	63.158	ENSRBIG00000029053	LSG1	66	63.158	Rhinopithecus_bieti
ENSCING00000007079	-	91	63.158	ENSRROG00000037702	LSG1	66	63.158	Rhinopithecus_roxellana
ENSCING00000007079	-	98	42.769	YGL099W	LSG1	75	43.004	Saccharomyces_cerevisiae
ENSCING00000007079	-	91	63.684	ENSSBOG00000034938	LSG1	66	63.684	Saimiri_boliviensis_boliviensis
ENSCING00000007079	-	64	62.500	ENSSHAG00000003487	LSG1	59	62.500	Sarcophilus_harrisii
ENSCING00000007079	-	97	53.363	ENSSFOG00015008955	lsg1	84	47.761	Scleropages_formosus
ENSCING00000007079	-	94	58.673	ENSSDUG00000004622	lsg1	77	51.737	Seriola_dumerili
ENSCING00000007079	-	95	58.673	ENSSLDG00000010869	lsg1	84	48.387	Seriola_lalandi_dorsalis
ENSCING00000007079	-	73	53.043	ENSSARG00000012981	LSG1	53	53.043	Sorex_araneus
ENSCING00000007079	-	97	62.304	ENSSPUG00000016347	LSG1	75	62.011	Sphenodon_punctatus
ENSCING00000007079	-	94	58.673	ENSSPAG00000005508	lsg1	83	50.000	Stegastes_partitus
ENSCING00000007079	-	92	58.947	ENSSSCG00000011827	LSG1	83	47.037	Sus_scrofa
ENSCING00000007079	-	85	58.128	ENSTGUG00000009068	LSG1	68	58.128	Taeniopygia_guttata
ENSCING00000007079	-	88	54.884	ENSTRUG00000017380	lsg1	72	51.406	Takifugu_rubripes
ENSCING00000007079	-	88	60.714	ENSTNIG00000015570	lsg1	77	55.128	Tetraodon_nigroviridis
ENSCING00000007079	-	94	61.453	ENSTTRG00000000559	LSG1	70	61.453	Tursiops_truncatus
ENSCING00000007079	-	92	63.684	ENSUAMG00000012454	LSG1	77	63.684	Ursus_americanus
ENSCING00000007079	-	92	63.684	ENSUMAG00000000855	LSG1	72	63.684	Ursus_maritimus
ENSCING00000007079	-	91	61.579	ENSVPAG00000012400	LSG1	68	61.579	Vicugna_pacos
ENSCING00000007079	-	85	62.105	ENSVVUG00000008956	LSG1	63	62.105	Vulpes_vulpes
ENSCING00000007079	-	94	59.799	ENSXETG00000003451	lsg1	71	59.799	Xenopus_tropicalis
ENSCING00000007079	-	92	58.163	ENSXCOG00000003239	lsg1	74	54.260	Xiphophorus_couchianus
ENSCING00000007079	-	92	59.184	ENSXMAG00000005536	lsg1	84	47.810	Xiphophorus_maculatus