EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007380 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1675 bases
Position: chr8:4485220-4486894
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000015156	SRP54	PF00448.22	3.4e-78	1	1
ENSCINP00000015156	SRP54_N	PF02881.19	2.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000015156	-	1503	-	ENSCINP00000015156	501 (aa)	-	F6VBU5

Gene Model

Click here to download ENSCING00000007380's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007380's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007380	-	100	81.746	ENSG00000100883	SRP54	100	82.432	Homo_sapiens
ENSCING00000007380	-	100	82.738	ENSAPOG00000011314	srp54	100	82.738	Acanthochromis_polyacanthus
ENSCING00000007380	-	100	81.746	ENSAMEG00000015544	SRP54	100	81.746	Ailuropoda_melanoleuca
ENSCING00000007380	-	88	84.842	ENSACIG00000022831	srp54	96	84.842	Amphilophus_citrinellus
ENSCING00000007380	-	100	82.738	ENSAOCG00000019401	srp54	100	82.738	Amphiprion_ocellaris
ENSCING00000007380	-	100	82.738	ENSAPEG00000001977	srp54	100	82.738	Amphiprion_percula
ENSCING00000007380	-	100	82.937	ENSATEG00000013877	srp54	100	82.937	Anabas_testudineus
ENSCING00000007380	-	94	82.700	ENSAPLG00000010125	SRP54	95	82.700	Anas_platyrhynchos
ENSCING00000007380	-	84	80.569	ENSACAG00000010631	-	97	80.569	Anolis_carolinensis
ENSCING00000007380	-	62	68.571	ENSACAG00000001124	-	95	68.571	Anolis_carolinensis
ENSCING00000007380	-	100	81.151	ENSACAG00000002103	-	100	81.151	Anolis_carolinensis
ENSCING00000007380	-	100	81.746	ENSANAG00000022133	SRP54	100	81.746	Aotus_nancymaae
ENSCING00000007380	-	100	82.937	ENSACLG00000015866	srp54	100	82.937	Astatotilapia_calliptera
ENSCING00000007380	-	100	82.341	ENSAMXG00000032669	SRP54	100	82.341	Astyanax_mexicanus
ENSCING00000007380	-	100	81.746	ENSBTAG00000019085	SRP54	100	81.746	Bos_taurus
ENSCING00000007380	-	98	72.065	WBGene00009012	F21D5.7	99	72.065	Caenorhabditis_elegans
ENSCING00000007380	-	100	81.746	ENSCJAG00000006581	SRP54	100	81.746	Callithrix_jacchus
ENSCING00000007380	-	100	81.746	ENSCAFG00000013331	SRP54	100	81.746	Canis_familiaris
ENSCING00000007380	-	100	81.746	ENSCAFG00020023427	SRP54	100	81.746	Canis_lupus_dingo
ENSCING00000007380	-	100	81.746	ENSCHIG00000026345	SRP54	100	81.746	Capra_hircus
ENSCING00000007380	-	100	81.548	ENSTSYG00000002680	-	100	81.548	Carlito_syrichta
ENSCING00000007380	-	95	73.684	ENSTSYG00000035333	-	93	73.684	Carlito_syrichta
ENSCING00000007380	-	94	54.251	ENSCAPG00000008780	SRP54	100	54.251	Cavia_aperea
ENSCING00000007380	-	100	81.349	ENSCPOG00000003691	SRP54	100	81.349	Cavia_porcellus
ENSCING00000007380	-	91	85.714	ENSCCAG00000024179	SRP54	100	85.714	Cebus_capucinus
ENSCING00000007380	-	100	81.746	ENSCATG00000034083	SRP54	100	81.746	Cercocebus_atys
ENSCING00000007380	-	100	81.746	ENSCLAG00000015076	SRP54	100	81.746	Chinchilla_lanigera
ENSCING00000007380	-	100	81.746	ENSCSAG00000015575	SRP54	100	81.746	Chlorocebus_sabaeus
ENSCING00000007380	-	96	72.500	ENSCHOG00000008986	SRP54	100	72.500	Choloepus_hoffmanni
ENSCING00000007380	-	100	81.746	ENSCPBG00000026195	SRP54	100	81.746	Chrysemys_picta_bellii
ENSCING00000007380	-	100	81.746	ENSCANG00000028532	SRP54	100	81.746	Colobus_angolensis_palliatus
ENSCING00000007380	-	100	81.548	ENSCGRG00001009525	-	100	81.548	Cricetulus_griseus_chok1gshd
ENSCING00000007380	-	82	80.998	ENSCGRG00000009453	-	95	80.998	Cricetulus_griseus_crigri
ENSCING00000007380	-	98	83.503	ENSCSEG00000012392	srp54	97	83.503	Cynoglossus_semilaevis
ENSCING00000007380	-	100	82.738	ENSCVAG00000010395	srp54	100	82.738	Cyprinodon_variegatus
ENSCING00000007380	-	100	82.341	ENSDARG00000098367	srp54	100	82.341	Danio_rerio
ENSCING00000007380	-	100	81.746	ENSDNOG00000032525	SRP54	100	81.746	Dasypus_novemcinctus
ENSCING00000007380	-	88	73.077	ENSDORG00000005159	-	96	73.077	Dipodomys_ordii
ENSCING00000007380	-	97	77.732	FBgn0010747	Srp54k	96	77.551	Drosophila_melanogaster
ENSCING00000007380	-	82	46.944	ENSETEG00000012102	-	99	46.944	Echinops_telfairi
ENSCING00000007380	-	100	80.556	ENSETEG00000016307	-	100	80.556	Echinops_telfairi
ENSCING00000007380	-	100	81.349	ENSEBUG00000009437	-	100	81.349	Eptatretus_burgeri
ENSCING00000007380	-	100	81.746	ENSEASG00005002057	SRP54	100	81.746	Equus_asinus_asinus
ENSCING00000007380	-	98	82.892	ENSECAG00000018042	SRP54	97	82.892	Equus_caballus
ENSCING00000007380	-	100	68.651	ENSEEUG00000001511	SRP54	100	68.651	Erinaceus_europaeus
ENSCING00000007380	-	100	82.341	ENSELUG00000003395	srp54	100	82.341	Esox_lucius
ENSCING00000007380	-	100	81.548	ENSFCAG00000032033	SRP54	100	81.548	Felis_catus
ENSCING00000007380	-	100	81.349	ENSFALG00000005995	SRP54	100	81.349	Ficedula_albicollis
ENSCING00000007380	-	100	81.746	ENSFDAG00000016767	SRP54	99	82.892	Fukomys_damarensis
ENSCING00000007380	-	100	82.341	ENSFHEG00000004263	srp54	100	82.341	Fundulus_heteroclitus
ENSCING00000007380	-	95	76.987	ENSGMOG00000011391	srp54	100	76.987	Gadus_morhua
ENSCING00000007380	-	100	81.349	ENSGALG00000023135	SRP54	100	81.349	Gallus_gallus
ENSCING00000007380	-	100	82.738	ENSGAFG00000011586	srp54	100	82.738	Gambusia_affinis
ENSCING00000007380	-	100	81.944	ENSGACG00000004181	srp54	100	83.871	Gasterosteus_aculeatus
ENSCING00000007380	-	100	81.746	ENSGAGG00000014766	SRP54	100	81.746	Gopherus_agassizii
ENSCING00000007380	-	100	81.746	ENSGGOG00000002926	SRP54	100	81.746	Gorilla_gorilla
ENSCING00000007380	-	100	82.937	ENSHBUG00000005678	srp54	100	82.937	Haplochromis_burtoni
ENSCING00000007380	-	100	81.746	ENSHGLG00000002850	SRP54	100	81.746	Heterocephalus_glaber_female
ENSCING00000007380	-	100	57.426	ENSHGLG00100007281	-	100	57.426	Heterocephalus_glaber_male
ENSCING00000007380	-	100	81.746	ENSHGLG00100005263	SRP54	100	81.746	Heterocephalus_glaber_male
ENSCING00000007380	-	100	81.548	ENSHCOG00000021127	srp54	100	81.548	Hippocampus_comes
ENSCING00000007380	-	100	82.341	ENSIPUG00000001420	srp54	100	82.341	Ictalurus_punctatus
ENSCING00000007380	-	100	81.746	ENSSTOG00000016023	SRP54	100	81.746	Ictidomys_tridecemlineatus
ENSCING00000007380	-	100	76.984	ENSJJAG00000013417	-	100	76.984	Jaculus_jaculus
ENSCING00000007380	-	87	62.955	ENSJJAG00000016404	-	100	62.955	Jaculus_jaculus
ENSCING00000007380	-	100	82.937	ENSKMAG00000007707	srp54	100	82.937	Kryptolebias_marmoratus
ENSCING00000007380	-	100	82.738	ENSLBEG00000021122	srp54	100	82.738	Labrus_bergylta
ENSCING00000007380	-	100	82.738	ENSLBEG00000018690	srp54	100	82.738	Labrus_bergylta
ENSCING00000007380	-	100	82.143	ENSLACG00000017890	SRP54	100	82.143	Latimeria_chalumnae
ENSCING00000007380	-	100	82.937	ENSLOCG00000009440	srp54	100	82.937	Lepisosteus_oculatus
ENSCING00000007380	-	100	81.746	ENSLAFG00000012007	SRP54	100	81.746	Loxodonta_africana
ENSCING00000007380	-	100	81.746	ENSMFAG00000044371	SRP54	100	81.746	Macaca_fascicularis
ENSCING00000007380	-	100	81.746	ENSMMUG00000015073	FAM177A1	100	81.746	Macaca_mulatta
ENSCING00000007380	-	100	81.746	ENSMNEG00000006947	SRP54	100	81.746	Macaca_nemestrina
ENSCING00000007380	-	100	81.746	ENSMLEG00000042251	SRP54	100	81.746	Mandrillus_leucophaeus
ENSCING00000007380	-	100	82.937	ENSMAMG00000004803	srp54	100	82.937	Mastacembelus_armatus
ENSCING00000007380	-	100	82.937	ENSMZEG00005027528	srp54	100	82.937	Maylandia_zebra
ENSCING00000007380	-	100	77.075	ENSMGAG00000012481	SRP54	100	77.075	Meleagris_gallopavo
ENSCING00000007380	-	100	81.746	ENSMAUG00000014447	-	100	81.746	Mesocricetus_auratus
ENSCING00000007380	-	100	81.746	ENSMICG00000010270	SRP54	100	81.746	Microcebus_murinus
ENSCING00000007380	-	87	82.045	ENSMOCG00000000948	-	100	82.045	Microtus_ochrogaster
ENSCING00000007380	-	90	82.379	ENSMMOG00000020303	srp54	99	82.379	Mola_mola
ENSCING00000007380	-	100	81.944	ENSMODG00000023150	-	100	81.944	Monodelphis_domestica
ENSCING00000007380	-	100	81.944	ENSMODG00000012925	-	100	81.944	Monodelphis_domestica
ENSCING00000007380	-	88	85.068	ENSMALG00000009163	srp54	98	85.068	Monopterus_albus
ENSCING00000007380	-	100	81.746	MGP_CAROLIEiJ_G0017754	-	100	81.746	Mus_caroli
ENSCING00000007380	-	100	81.151	ENSMUSG00000079108	Srp54c	100	81.151	Mus_musculus
ENSCING00000007380	-	100	81.746	ENSMUSG00000073079	Srp54a	100	84.545	Mus_musculus
ENSCING00000007380	-	100	81.746	ENSMUSG00000112449	Srp54b	100	81.746	Mus_musculus
ENSCING00000007380	-	100	81.746	MGP_PahariEiJ_G0029510	-	100	81.746	Mus_pahari
ENSCING00000007380	-	100	81.746	ENSMPUG00000016302	SRP54	100	81.746	Mustela_putorius_furo
ENSCING00000007380	-	100	81.349	ENSMLUG00000008958	SRP54	100	81.349	Myotis_lucifugus
ENSCING00000007380	-	100	72.817	ENSNGAG00000019806	-	100	72.817	Nannospalax_galili
ENSCING00000007380	-	87	83.409	ENSNBRG00000006000	srp54	100	83.409	Neolamprologus_brichardi
ENSCING00000007380	-	100	81.746	ENSNLEG00000003496	SRP54	100	81.746	Nomascus_leucogenys
ENSCING00000007380	-	67	82.143	ENSMEUG00000000138	-	76	82.143	Notamacropus_eugenii
ENSCING00000007380	-	57	88.889	ENSOPRG00000014502	-	60	88.889	Ochotona_princeps
ENSCING00000007380	-	100	81.746	ENSODEG00000004865	SRP54	100	81.746	Octodon_degus
ENSCING00000007380	-	100	82.937	ENSONIG00000011768	srp54	100	82.937	Oreochromis_niloticus
ENSCING00000007380	-	100	81.746	ENSOANG00000014051	SRP54	100	81.746	Ornithorhynchus_anatinus
ENSCING00000007380	-	100	81.151	ENSOCUG00000007838	SRP54	100	81.151	Oryctolagus_cuniculus
ENSCING00000007380	-	100	82.738	ENSORLG00000010027	srp54	100	82.738	Oryzias_latipes
ENSCING00000007380	-	100	82.738	ENSORLG00020001878	srp54	100	82.738	Oryzias_latipes_hni
ENSCING00000007380	-	100	82.738	ENSORLG00015021866	srp54	100	82.738	Oryzias_latipes_hsok
ENSCING00000007380	-	100	82.540	ENSOMEG00000020952	srp54	100	82.540	Oryzias_melastigma
ENSCING00000007380	-	100	81.746	ENSOGAG00000012188	SRP54	100	81.746	Otolemur_garnettii
ENSCING00000007380	-	100	81.746	ENSOARG00000007160	SRP54	100	81.746	Ovis_aries
ENSCING00000007380	-	100	81.746	ENSPPAG00000017434	SRP54	100	81.746	Pan_paniscus
ENSCING00000007380	-	100	80.952	ENSPPRG00000014047	SRP54	100	80.952	Panthera_pardus
ENSCING00000007380	-	100	81.548	ENSPTIG00000000744	SRP54	96	81.548	Panthera_tigris_altaica
ENSCING00000007380	-	100	81.746	ENSPTRG00000006259	FAM177A1	100	81.746	Pan_troglodytes
ENSCING00000007380	-	100	81.746	ENSPANG00000023853	SRP54	100	81.746	Papio_anubis
ENSCING00000007380	-	100	83.333	ENSPKIG00000001953	srp54	100	83.333	Paramormyrops_kingsleyae
ENSCING00000007380	-	100	81.746	ENSPSIG00000006476	SRP54	100	81.746	Pelodiscus_sinensis
ENSCING00000007380	-	90	83.260	ENSPMGG00000004127	srp54	98	83.260	Periophthalmus_magnuspinnatus
ENSCING00000007380	-	100	72.619	ENSPEMG00000019634	-	100	72.619	Peromyscus_maniculatus_bairdii
ENSCING00000007380	-	98	82.317	ENSPMAG00000006078	-	98	82.317	Petromyzon_marinus
ENSCING00000007380	-	100	81.746	ENSPCIG00000016175	SRP54	100	81.746	Phascolarctos_cinereus
ENSCING00000007380	-	100	82.738	ENSPFOG00000008870	srp54	100	82.738	Poecilia_formosa
ENSCING00000007380	-	100	82.738	ENSPLAG00000009889	srp54	100	82.738	Poecilia_latipinna
ENSCING00000007380	-	100	82.738	ENSPMEG00000008601	srp54	100	82.738	Poecilia_mexicana
ENSCING00000007380	-	100	82.738	ENSPREG00000004505	srp54	100	82.738	Poecilia_reticulata
ENSCING00000007380	-	100	77.579	ENSPPYG00000005739	SRP54	100	77.579	Pongo_abelii
ENSCING00000007380	-	100	78.373	ENSPCAG00000006268	SRP54	100	78.373	Procavia_capensis
ENSCING00000007380	-	100	80.000	ENSPCOG00000022473	SRP54	100	80.000	Propithecus_coquereli
ENSCING00000007380	-	63	84.753	ENSPVAG00000010056	SRP54	82	84.753	Pteropus_vampyrus
ENSCING00000007380	-	100	82.937	ENSPNYG00000009717	srp54	100	82.937	Pundamilia_nyererei
ENSCING00000007380	-	100	82.540	ENSPNAG00000008544	srp54	100	82.540	Pygocentrus_nattereri
ENSCING00000007380	-	100	81.548	ENSRNOG00000032776	Srp54a	100	81.548	Rattus_norvegicus
ENSCING00000007380	-	100	81.746	ENSRROG00000041292	SRP54	100	81.746	Rhinopithecus_roxellana
ENSCING00000007380	-	92	50.214	YPR088C	SRP54	96	48.000	Saccharomyces_cerevisiae
ENSCING00000007380	-	94	81.435	ENSSBOG00000035145	SRP54	100	81.435	Saimiri_boliviensis_boliviensis
ENSCING00000007380	-	68	78.717	ENSSHAG00000000671	SRP54	100	78.717	Sarcophilus_harrisii
ENSCING00000007380	-	100	83.135	ENSSFOG00015013920	srp54	100	83.135	Scleropages_formosus
ENSCING00000007380	-	100	77.903	ENSSMAG00000002441	srp54	100	77.903	Scophthalmus_maximus
ENSCING00000007380	-	100	82.738	ENSSDUG00000018586	srp54	100	82.738	Seriola_dumerili
ENSCING00000007380	-	100	82.540	ENSSLDG00000010476	srp54	100	82.540	Seriola_lalandi_dorsalis
ENSCING00000007380	-	100	81.746	ENSSARG00000002744	SRP54	100	81.746	Sorex_araneus
ENSCING00000007380	-	100	81.746	ENSSPUG00000013101	SRP54	100	81.746	Sphenodon_punctatus
ENSCING00000007380	-	100	82.738	ENSSPAG00000002354	srp54	100	82.738	Stegastes_partitus
ENSCING00000007380	-	100	81.746	ENSSSCG00000001955	SRP54	100	81.746	Sus_scrofa
ENSCING00000007380	-	94	82.700	ENSTGUG00000011945	-	95	82.700	Taeniopygia_guttata
ENSCING00000007380	-	100	82.143	ENSTRUG00000007057	srp54	100	82.143	Takifugu_rubripes
ENSCING00000007380	-	100	81.746	ENSTNIG00000002589	srp54	100	81.746	Tetraodon_nigroviridis
ENSCING00000007380	-	89	76.063	ENSTBEG00000011409	SRP54	100	76.063	Tupaia_belangeri
ENSCING00000007380	-	100	72.817	ENSTTRG00000000928	SRP54	100	72.817	Tursiops_truncatus
ENSCING00000007380	-	52	87.786	ENSUAMG00000012385	SRP54	100	87.786	Ursus_americanus
ENSCING00000007380	-	100	81.746	ENSUMAG00000011234	SRP54	100	81.746	Ursus_maritimus
ENSCING00000007380	-	94	82.911	ENSVPAG00000005668	SRP54	100	82.911	Vicugna_pacos
ENSCING00000007380	-	100	81.746	ENSVVUG00000019962	SRP54	100	81.746	Vulpes_vulpes
ENSCING00000007380	-	100	70.809	ENSXETG00000012290	srp54	100	70.809	Xenopus_tropicalis
ENSCING00000007380	-	88	84.842	ENSXCOG00000004658	srp54	96	84.842	Xiphophorus_couchianus
ENSCING00000007380	-	100	82.738	ENSXMAG00000018315	srp54	100	82.738	Xiphophorus_maculatus