EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007437 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 12886 bases
Position: chr8:4498503-4511388
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000015292	CPSF_A	PF03178.15	1.5e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000015292	-	3980	-	ENSCINP00000015292	1145 (aa)	-	F7ANR5

Gene Model

Click here to download ENSCING00000007437's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03420	Nucleotide excision repair	KEGG
cin04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007437's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007437	-	100	61.892	ENSG00000167986	DDB1	100	67.606	Homo_sapiens
ENSCING00000007437	-	99	60.522	ENSAPOG00000005036	ddb1	99	61.895	Acanthochromis_polyacanthus
ENSCING00000007437	-	100	61.892	ENSAMEG00000016518	DDB1	100	61.979	Ailuropoda_melanoleuca
ENSCING00000007437	-	86	62.097	ENSACIG00000020624	ddb1	99	62.097	Amphilophus_citrinellus
ENSCING00000007437	-	100	61.198	ENSAOCG00000003066	ddb1	100	61.198	Amphiprion_ocellaris
ENSCING00000007437	-	100	61.198	ENSAPEG00000000092	ddb1	100	61.198	Amphiprion_percula
ENSCING00000007437	-	94	61.178	ENSATEG00000020571	ddb1	99	59.658	Anabas_testudineus
ENSCING00000007437	-	98	61.424	ENSAPLG00000007174	DDB1	99	61.424	Anas_platyrhynchos
ENSCING00000007437	-	100	61.632	ENSACAG00000017758	DDB1	100	61.719	Anolis_carolinensis
ENSCING00000007437	-	100	61.892	ENSANAG00000021878	DDB1	100	61.979	Aotus_nancymaae
ENSCING00000007437	-	100	61.545	ENSACLG00000012401	ddb1	100	61.545	Astatotilapia_calliptera
ENSCING00000007437	-	100	61.806	ENSBTAG00000021569	DDB1	93	61.892	Bos_taurus
ENSCING00000007437	-	100	34.846	WBGene00010890	ddb-1	100	34.846	Caenorhabditis_elegans
ENSCING00000007437	-	100	61.892	ENSCJAG00000019319	DDB1	100	61.979	Callithrix_jacchus
ENSCING00000007437	-	100	61.892	ENSCAFG00000016264	DDB1	100	61.979	Canis_familiaris
ENSCING00000007437	-	94	61.822	ENSCAFG00020012722	DDB1	99	61.914	Canis_lupus_dingo
ENSCING00000007437	-	100	61.806	ENSCHIG00000014969	DDB1	100	61.892	Capra_hircus
ENSCING00000007437	-	100	61.806	ENSTSYG00000008027	DDB1	100	61.892	Carlito_syrichta
ENSCING00000007437	-	98	61.538	ENSCAPG00000010786	DDB1	100	61.627	Cavia_aperea
ENSCING00000007437	-	100	61.719	ENSCPOG00000009956	DDB1	100	61.806	Cavia_porcellus
ENSCING00000007437	-	100	61.892	ENSCCAG00000035883	DDB1	100	61.979	Cebus_capucinus
ENSCING00000007437	-	100	60.121	ENSCATG00000044495	DDB1	100	60.121	Cercocebus_atys
ENSCING00000007437	-	100	61.892	ENSCLAG00000004126	DDB1	100	61.979	Chinchilla_lanigera
ENSCING00000007437	-	100	61.892	ENSCSAG00000006392	DDB1	100	61.979	Chlorocebus_sabaeus
ENSCING00000007437	-	87	58.333	ENSCHOG00000011377	DDB1	89	58.523	Choloepus_hoffmanni
ENSCING00000007437	-	100	61.719	ENSCPBG00000017728	DDB1	100	61.806	Chrysemys_picta_bellii
ENSCING00000007437	-	94	86.372	ENSCSAVG00000004783	-	100	86.372	Ciona_savignyi
ENSCING00000007437	-	100	61.892	ENSCANG00000019948	DDB1	100	61.979	Colobus_angolensis_palliatus
ENSCING00000007437	-	100	61.892	ENSCGRG00001016599	Ddb1	100	61.979	Cricetulus_griseus_chok1gshd
ENSCING00000007437	-	100	61.892	ENSCGRG00000013427	Ddb1	100	61.979	Cricetulus_griseus_crigri
ENSCING00000007437	-	93	61.323	ENSCSEG00000012499	ddb1	99	60.900	Cynoglossus_semilaevis
ENSCING00000007437	-	94	61.460	ENSCVAG00000019531	ddb1	99	61.460	Cyprinodon_variegatus
ENSCING00000007437	-	100	59.584	ENSDARG00000074431	ddb1	100	60.156	Danio_rerio
ENSCING00000007437	-	94	61.822	ENSDNOG00000014884	DDB1	97	61.914	Dasypus_novemcinctus
ENSCING00000007437	-	84	61.062	ENSDORG00000000127	Ddb1	100	61.062	Dipodomys_ordii
ENSCING00000007437	-	100	54.113	FBgn0260962	pic	100	54.113	Drosophila_melanogaster
ENSCING00000007437	-	65	75.735	ENSETEG00000001053	-	71	63.780	Echinops_telfairi
ENSCING00000007437	-	78	60.222	ENSEBUG00000014593	ddb1	97	60.333	Eptatretus_burgeri
ENSCING00000007437	-	100	61.719	ENSEASG00005008184	DDB1	100	61.892	Equus_asinus_asinus
ENSCING00000007437	-	100	61.806	ENSECAG00000012136	DDB1	100	61.979	Equus_caballus
ENSCING00000007437	-	85	57.546	ENSEEUG00000003194	DDB1	85	57.711	Erinaceus_europaeus
ENSCING00000007437	-	100	61.285	ENSELUG00000023868	ddb1	100	61.285	Esox_lucius
ENSCING00000007437	-	100	61.892	ENSFCAG00000029716	DDB1	100	61.979	Felis_catus
ENSCING00000007437	-	100	61.472	ENSFALG00000011981	DDB1	100	61.472	Ficedula_albicollis
ENSCING00000007437	-	100	61.806	ENSFDAG00000005128	DDB1	100	61.892	Fukomys_damarensis
ENSCING00000007437	-	89	62.387	ENSFHEG00000022133	ddb1	98	62.387	Fundulus_heteroclitus
ENSCING00000007437	-	79	66.555	ENSGMOG00000019386	ddb1	94	66.555	Gadus_morhua
ENSCING00000007437	-	100	61.925	ENSGALG00000042333	DDB1	100	61.925	Gallus_gallus
ENSCING00000007437	-	94	61.460	ENSGAFG00000013142	ddb1	99	61.460	Gambusia_affinis
ENSCING00000007437	-	96	60.562	ENSGACG00000017182	ddb1	100	60.562	Gasterosteus_aculeatus
ENSCING00000007437	-	95	61.223	ENSGAGG00000014124	DDB1	100	61.314	Gopherus_agassizii
ENSCING00000007437	-	100	61.892	ENSGGOG00000004052	DDB1	100	61.979	Gorilla_gorilla
ENSCING00000007437	-	100	61.545	ENSHBUG00000008873	ddb1	100	61.545	Haplochromis_burtoni
ENSCING00000007437	-	100	61.719	ENSHGLG00000018430	DDB1	100	61.806	Heterocephalus_glaber_female
ENSCING00000007437	-	100	61.024	ENSHGLG00100014475	DDB1	100	61.111	Heterocephalus_glaber_male
ENSCING00000007437	-	94	61.121	ENSHCOG00000018670	ddb1	98	61.121	Hippocampus_comes
ENSCING00000007437	-	100	60.938	ENSIPUG00000005612	DDB1	100	60.938	Ictalurus_punctatus
ENSCING00000007437	-	100	61.892	ENSSTOG00000007552	DDB1	100	61.979	Ictidomys_tridecemlineatus
ENSCING00000007437	-	100	61.719	ENSJJAG00000017769	Ddb1	100	61.806	Jaculus_jaculus
ENSCING00000007437	-	94	61.275	ENSKMAG00000002315	ddb1	99	61.275	Kryptolebias_marmoratus
ENSCING00000007437	-	84	61.665	ENSLBEG00000017065	ddb1	99	61.665	Labrus_bergylta
ENSCING00000007437	-	100	61.872	ENSLACG00000017611	DDB1	100	61.872	Latimeria_chalumnae
ENSCING00000007437	-	90	64.486	ENSLOCG00000000012	ddb1	99	64.486	Lepisosteus_oculatus
ENSCING00000007437	-	100	61.632	ENSLAFG00000011513	DDB1	100	61.719	Loxodonta_africana
ENSCING00000007437	-	100	61.892	ENSMFAG00000042035	DDB1	100	61.979	Macaca_fascicularis
ENSCING00000007437	-	99	61.888	ENSMMUG00000002691	DDB1	100	67.606	Macaca_mulatta
ENSCING00000007437	-	100	61.892	ENSMNEG00000031559	DDB1	100	61.979	Macaca_nemestrina
ENSCING00000007437	-	100	61.892	ENSMLEG00000044136	DDB1	100	61.979	Mandrillus_leucophaeus
ENSCING00000007437	-	100	61.372	ENSMAMG00000014372	ddb1	100	61.372	Mastacembelus_armatus
ENSCING00000007437	-	100	61.545	ENSMZEG00005013835	ddb1	100	61.545	Maylandia_zebra
ENSCING00000007437	-	94	61.142	ENSMGAG00000004990	DDB1	100	61.142	Meleagris_gallopavo
ENSCING00000007437	-	100	61.892	ENSMAUG00000012926	Ddb1	100	61.979	Mesocricetus_auratus
ENSCING00000007437	-	100	61.892	ENSMICG00000013703	DDB1	100	61.979	Microcebus_murinus
ENSCING00000007437	-	100	61.806	ENSMOCG00000020499	Ddb1	100	61.892	Microtus_ochrogaster
ENSCING00000007437	-	86	61.996	ENSMMOG00000001758	ddb1	99	61.996	Mola_mola
ENSCING00000007437	-	100	56.655	ENSMODG00000020353	DDB1	100	56.948	Monodelphis_domestica
ENSCING00000007437	-	100	61.372	ENSMALG00000014071	ddb1	100	61.372	Monopterus_albus
ENSCING00000007437	-	100	61.892	MGP_CAROLIEiJ_G0022695	Ddb1	100	61.979	Mus_caroli
ENSCING00000007437	-	100	61.806	ENSMUSG00000024740	Ddb1	100	61.892	Mus_musculus
ENSCING00000007437	-	100	61.892	MGP_PahariEiJ_G0014189	Ddb1	100	61.979	Mus_pahari
ENSCING00000007437	-	100	61.892	MGP_SPRETEiJ_G0023609	Ddb1	100	61.979	Mus_spretus
ENSCING00000007437	-	100	59.896	ENSMPUG00000014200	DDB1	100	59.983	Mustela_putorius_furo
ENSCING00000007437	-	100	61.979	ENSMLUG00000013232	DDB1	100	62.066	Myotis_lucifugus
ENSCING00000007437	-	100	61.806	ENSNGAG00000009384	Ddb1	100	61.806	Nannospalax_galili
ENSCING00000007437	-	100	61.545	ENSNBRG00000019581	ddb1	100	61.545	Neolamprologus_brichardi
ENSCING00000007437	-	100	59.759	ENSNLEG00000002022	DDB1	100	59.845	Nomascus_leucogenys
ENSCING00000007437	-	90	63.028	ENSMEUG00000001099	DDB1	91	63.028	Notamacropus_eugenii
ENSCING00000007437	-	90	57.047	ENSOPRG00000008254	DDB1	90	57.143	Ochotona_princeps
ENSCING00000007437	-	100	61.806	ENSODEG00000002419	DDB1	100	61.892	Octodon_degus
ENSCING00000007437	-	100	61.545	ENSONIG00000005804	ddb1	100	61.545	Oreochromis_niloticus
ENSCING00000007437	-	90	61.457	ENSOANG00000004897	DDB1	99	61.553	Ornithorhynchus_anatinus
ENSCING00000007437	-	100	61.892	ENSOCUG00000001667	DDB1	100	61.979	Oryctolagus_cuniculus
ENSCING00000007437	-	96	60.653	ENSORLG00000001399	ddb1	98	61.823	Oryzias_latipes
ENSCING00000007437	-	94	61.362	ENSORLG00020001277	ddb1	96	61.362	Oryzias_latipes_hni
ENSCING00000007437	-	94	61.362	ENSORLG00015002080	ddb1	99	61.362	Oryzias_latipes_hsok
ENSCING00000007437	-	96	60.325	ENSOMEG00000006181	ddb1	99	60.325	Oryzias_melastigma
ENSCING00000007437	-	100	61.806	ENSOGAG00000016103	DDB1	100	61.892	Otolemur_garnettii
ENSCING00000007437	-	99	61.586	ENSOARG00000011716	DDB1	98	61.674	Ovis_aries
ENSCING00000007437	-	100	61.892	ENSPPAG00000035343	DDB1	100	61.979	Pan_paniscus
ENSCING00000007437	-	100	61.892	ENSPPRG00000013300	DDB1	100	61.979	Panthera_pardus
ENSCING00000007437	-	98	61.715	ENSPTIG00000006909	DDB1	98	61.804	Panthera_tigris_altaica
ENSCING00000007437	-	100	61.892	ENSPTRG00000003737	DDB1	100	61.979	Pan_troglodytes
ENSCING00000007437	-	100	61.892	ENSPANG00000000242	DDB1	100	61.979	Papio_anubis
ENSCING00000007437	-	94	61.738	ENSPKIG00000019213	ddb1	94	61.738	Paramormyrops_kingsleyae
ENSCING00000007437	-	98	61.356	ENSPSIG00000013275	DDB1	100	61.444	Pelodiscus_sinensis
ENSCING00000007437	-	86	61.794	ENSPMGG00000021179	ddb1	99	61.794	Periophthalmus_magnuspinnatus
ENSCING00000007437	-	100	61.892	ENSPEMG00000012241	Ddb1	100	61.979	Peromyscus_maniculatus_bairdii
ENSCING00000007437	-	89	61.068	ENSPMAG00000008479	ddb1	100	61.068	Petromyzon_marinus
ENSCING00000007437	-	100	61.892	ENSPCIG00000002643	DDB1	100	61.979	Phascolarctos_cinereus
ENSCING00000007437	-	100	61.318	ENSPFOG00000002768	ddb1	100	61.318	Poecilia_formosa
ENSCING00000007437	-	100	61.372	ENSPLAG00000017227	ddb1	100	61.372	Poecilia_latipinna
ENSCING00000007437	-	100	61.372	ENSPMEG00000011398	ddb1	100	61.372	Poecilia_mexicana
ENSCING00000007437	-	94	61.270	ENSPREG00000004440	ddb1	98	61.270	Poecilia_reticulata
ENSCING00000007437	-	100	59.585	ENSPPYG00000003193	DDB1	100	59.585	Pongo_abelii
ENSCING00000007437	-	84	62.857	ENSPCAG00000011040	DDB1	84	62.857	Procavia_capensis
ENSCING00000007437	-	100	60.832	ENSPCOG00000015176	DDB1	100	60.919	Propithecus_coquereli
ENSCING00000007437	-	100	61.719	ENSPVAG00000003847	DDB1	100	61.806	Pteropus_vampyrus
ENSCING00000007437	-	94	61.014	ENSPNAG00000006635	ddb1	97	61.014	Pygocentrus_nattereri
ENSCING00000007437	-	100	61.892	ENSRNOG00000020715	Ddb1	100	61.979	Rattus_norvegicus
ENSCING00000007437	-	100	61.892	ENSRBIG00000033611	DDB1	100	61.979	Rhinopithecus_bieti
ENSCING00000007437	-	100	61.892	ENSRROG00000041407	DDB1	100	61.979	Rhinopithecus_roxellana
ENSCING00000007437	-	100	61.806	ENSSBOG00000019775	DDB1	100	61.892	Saimiri_boliviensis_boliviensis
ENSCING00000007437	-	94	59.982	ENSSHAG00000011600	DDB1	100	60.074	Sarcophilus_harrisii
ENSCING00000007437	-	94	61.581	ENSSFOG00015011151	ddb1	97	61.581	Scleropages_formosus
ENSCING00000007437	-	100	61.458	ENSSMAG00000009495	ddb1	100	61.458	Scophthalmus_maximus
ENSCING00000007437	-	100	61.285	ENSSDUG00000004642	ddb1	100	61.285	Seriola_dumerili
ENSCING00000007437	-	100	61.285	ENSSLDG00000015804	ddb1	100	61.285	Seriola_lalandi_dorsalis
ENSCING00000007437	-	70	62.264	ENSSARG00000003290	-	72	62.264	Sorex_araneus
ENSCING00000007437	-	100	61.806	ENSSPUG00000019338	DDB1	100	61.979	Sphenodon_punctatus
ENSCING00000007437	-	94	61.178	ENSSPAG00000009888	ddb1	99	61.178	Stegastes_partitus
ENSCING00000007437	-	100	61.024	ENSSSCG00000013094	DDB1	100	61.111	Sus_scrofa
ENSCING00000007437	-	100	61.545	ENSTGUG00000006414	DDB1	100	61.545	Taeniopygia_guttata
ENSCING00000007437	-	94	61.368	ENSTRUG00000016682	ddb1	98	61.368	Takifugu_rubripes
ENSCING00000007437	-	88	57.495	ENSTNIG00000009565	ddb1	99	57.495	Tetraodon_nigroviridis
ENSCING00000007437	-	92	60.026	ENSTTRG00000011055	DDB1	94	60.026	Tursiops_truncatus
ENSCING00000007437	-	94	61.822	ENSUAMG00000017793	DDB1	93	61.914	Ursus_americanus
ENSCING00000007437	-	94	61.822	ENSUMAG00000011788	DDB1	98	61.914	Ursus_maritimus
ENSCING00000007437	-	90	58.182	ENSVPAG00000007963	DDB1	92	58.289	Vicugna_pacos
ENSCING00000007437	-	100	61.892	ENSVVUG00000004987	DDB1	100	61.979	Vulpes_vulpes
ENSCING00000007437	-	100	61.505	ENSXETG00000008820	ddb1	100	61.505	Xenopus_tropicalis
ENSCING00000007437	-	86	61.996	ENSXCOG00000013956	ddb1	99	61.996	Xiphophorus_couchianus
ENSCING00000007437	-	94	61.460	ENSXMAG00000000022	ddb1	99	61.460	Xiphophorus_maculatus