EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007519 (Gene tree)
Gene ID: 100184512
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm4
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1803 bases
Position: chr8:4852845-4854647
Accession: 100184512
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000024281	LSM	PF01423.22	9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000024527	-	851	-	ENSCINP00000024281	127 (aa)	XP_002128141	F6YF45

Gene Model

Click here to download ENSCING00000007519's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03018	RNA degradation	KEGG
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007519's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007519	-	69	92.045	ENSG00000130520	LSM4	99	73.529	Homo_sapiens
ENSCING00000007519	-	72	92.391	ENSAPOG00000005643	lsm4	57	93.023	Acanthochromis_polyacanthus
ENSCING00000007519	-	69	91.954	ENSAMEG00000011162	LSM4	59	90.698	Ailuropoda_melanoleuca
ENSCING00000007519	-	72	92.391	ENSAOCG00000006414	lsm4	58	93.023	Amphiprion_ocellaris
ENSCING00000007519	-	72	92.391	ENSAPEG00000006238	lsm4	58	93.023	Amphiprion_percula
ENSCING00000007519	-	76	87.629	ENSATEG00000016559	lsm4	57	93.023	Anabas_testudineus
ENSCING00000007519	-	69	92.045	ENSANAG00000034659	LSM4	62	91.860	Aotus_nancymaae
ENSCING00000007519	-	91	76.613	ENSACLG00000022738	lsm4	59	93.023	Astatotilapia_calliptera
ENSCING00000007519	-	72	92.391	ENSAMXG00000016932	lsm4	61	93.023	Astyanax_mexicanus
ENSCING00000007519	-	69	92.045	ENSBTAG00000008578	LSM4	62	91.860	Bos_taurus
ENSCING00000007519	-	65	73.171	WBGene00003078	lsm-4	67	73.171	Caenorhabditis_elegans
ENSCING00000007519	-	69	92.045	ENSCJAG00000014171	LSM4	62	91.860	Callithrix_jacchus
ENSCING00000007519	-	69	92.045	ENSCAFG00000014900	LSM4	56	91.860	Canis_familiaris
ENSCING00000007519	-	69	92.045	ENSCAFG00020012137	LSM4	62	91.860	Canis_lupus_dingo
ENSCING00000007519	-	69	91.954	ENSCHIG00000010928	LSM4	56	91.765	Capra_hircus
ENSCING00000007519	-	69	92.045	ENSTSYG00000030906	LSM4	62	91.860	Carlito_syrichta
ENSCING00000007519	-	69	92.045	ENSCAPG00000014140	LSM4	62	91.860	Cavia_aperea
ENSCING00000007519	-	69	92.045	ENSCPOG00000024117	LSM4	62	91.860	Cavia_porcellus
ENSCING00000007519	-	69	92.045	ENSCCAG00000036308	LSM4	62	91.860	Cebus_capucinus
ENSCING00000007519	-	69	92.045	ENSCATG00000029311	LSM4	97	73.134	Cercocebus_atys
ENSCING00000007519	-	69	92.045	ENSCLAG00000010828	LSM4	62	91.860	Chinchilla_lanigera
ENSCING00000007519	-	69	92.045	ENSCSAG00000005370	LSM4	62	91.860	Chlorocebus_sabaeus
ENSCING00000007519	-	69	93.182	ENSCPBG00000012925	LSM4	62	93.023	Chrysemys_picta_bellii
ENSCING00000007519	-	68	97.674	ENSCSAVG00000008596	-	100	85.827	Ciona_savignyi
ENSCING00000007519	-	69	92.045	ENSCANG00000043686	LSM4	97	71.014	Colobus_angolensis_palliatus
ENSCING00000007519	-	69	90.909	ENSCGRG00001014436	Lsm4	60	92.771	Cricetulus_griseus_chok1gshd
ENSCING00000007519	-	69	90.805	ENSCGRG00000009398	Lsm4	60	92.683	Cricetulus_griseus_crigri
ENSCING00000007519	-	76	87.629	ENSCSEG00000016127	lsm4	61	93.023	Cynoglossus_semilaevis
ENSCING00000007519	-	72	93.478	ENSCVAG00000010601	lsm4	60	94.186	Cyprinodon_variegatus
ENSCING00000007519	-	61	93.506	ENSCVAG00000021828	lsm4	55	93.056	Cyprinodon_variegatus
ENSCING00000007519	-	72	92.391	ENSDARG00000023852	lsm4	83	74.790	Danio_rerio
ENSCING00000007519	-	69	92.045	ENSDORG00000024225	Lsm4	62	91.860	Dipodomys_ordii
ENSCING00000007519	-	77	82.653	FBgn0032240	CG17768	56	89.535	Drosophila_melanogaster
ENSCING00000007519	-	57	90.411	ENSETEG00000007762	-	57	90.141	Echinops_telfairi
ENSCING00000007519	-	63	88.750	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSCING00000007519	-	72	92.308	ENSELUG00000012821	lsm4	64	92.941	Esox_lucius
ENSCING00000007519	-	69	92.045	ENSFCAG00000040580	LSM4	62	91.860	Felis_catus
ENSCING00000007519	-	69	93.103	ENSFALG00000009478	LSM4	62	91.860	Ficedula_albicollis
ENSCING00000007519	-	69	91.954	ENSFDAG00000010124	LSM4	62	91.765	Fukomys_damarensis
ENSCING00000007519	-	72	92.308	ENSGMOG00000007729	lsm4	84	73.171	Gadus_morhua
ENSCING00000007519	-	69	93.182	ENSGALG00000003385	LSM4	62	93.023	Gallus_gallus
ENSCING00000007519	-	91	78.226	ENSGAFG00000004903	lsm4	54	90.141	Gambusia_affinis
ENSCING00000007519	-	73	92.473	ENSGACG00000008140	lsm4	57	93.023	Gasterosteus_aculeatus
ENSCING00000007519	-	69	93.182	ENSGAGG00000017812	LSM4	62	93.023	Gopherus_agassizii
ENSCING00000007519	-	69	92.045	ENSGGOG00000012914	-	97	73.134	Gorilla_gorilla
ENSCING00000007519	-	69	92.045	ENSHGLG00000006568	LSM4	62	91.860	Heterocephalus_glaber_female
ENSCING00000007519	-	72	91.304	ENSHGLG00100007894	LSM4	92	91.860	Heterocephalus_glaber_male
ENSCING00000007519	-	76	87.629	ENSHCOG00000008819	lsm4	61	93.023	Hippocampus_comes
ENSCING00000007519	-	72	92.391	ENSIPUG00000005368	Lsm4	61	93.023	Ictalurus_punctatus
ENSCING00000007519	-	69	92.045	ENSSTOG00000016494	LSM4	62	91.860	Ictidomys_tridecemlineatus
ENSCING00000007519	-	69	90.909	ENSJJAG00000017420	Lsm4	62	90.698	Jaculus_jaculus
ENSCING00000007519	-	68	91.860	ENSKMAG00000005073	lsm4	60	91.860	Kryptolebias_marmoratus
ENSCING00000007519	-	76	87.629	ENSLBEG00000027930	lsm4	58	93.023	Labrus_bergylta
ENSCING00000007519	-	69	93.182	ENSLACG00000015861	LSM4	61	93.023	Latimeria_chalumnae
ENSCING00000007519	-	72	93.478	ENSLOCG00000002025	lsm4	61	94.186	Lepisosteus_oculatus
ENSCING00000007519	-	69	90.805	ENSLAFG00000017459	LSM4	62	89.535	Loxodonta_africana
ENSCING00000007519	-	69	92.045	ENSMFAG00000031194	LSM4	97	71.014	Macaca_fascicularis
ENSCING00000007519	-	69	92.045	ENSMMUG00000004405	LSM4	62	91.860	Macaca_mulatta
ENSCING00000007519	-	69	92.045	ENSMNEG00000042899	LSM4	97	71.014	Macaca_nemestrina
ENSCING00000007519	-	69	92.045	ENSMLEG00000027948	LSM4	97	73.134	Mandrillus_leucophaeus
ENSCING00000007519	-	96	72.519	ENSMAMG00000006190	lsm4	61	93.023	Mastacembelus_armatus
ENSCING00000007519	-	91	76.613	ENSMZEG00005016420	lsm4	59	93.023	Maylandia_zebra
ENSCING00000007519	-	93	74.419	ENSMGAG00000004976	LSM4	62	91.860	Meleagris_gallopavo
ENSCING00000007519	-	72	91.304	ENSMICG00000000222	LSM4	62	91.860	Microcebus_murinus
ENSCING00000007519	-	69	90.909	ENSMOCG00000020861	Lsm4	60	92.771	Microtus_ochrogaster
ENSCING00000007519	-	57	93.151	ENSMODG00000015044	-	57	92.958	Monodelphis_domestica
ENSCING00000007519	-	78	84.848	ENSMALG00000018159	lsm4	60	91.860	Monopterus_albus
ENSCING00000007519	-	69	90.909	MGP_CAROLIEiJ_G0031158	Lsm4	60	92.771	Mus_caroli
ENSCING00000007519	-	69	90.909	ENSMUSG00000031848	Lsm4	80	85.542	Mus_musculus
ENSCING00000007519	-	69	90.909	MGP_PahariEiJ_G0021623	Lsm4	60	92.771	Mus_pahari
ENSCING00000007519	-	69	90.909	MGP_SPRETEiJ_G0032276	Lsm4	60	92.771	Mus_spretus
ENSCING00000007519	-	69	92.045	ENSMPUG00000015589	LSM4	62	91.860	Mustela_putorius_furo
ENSCING00000007519	-	69	91.954	ENSMLUG00000004010	LSM4	62	90.698	Myotis_lucifugus
ENSCING00000007519	-	69	90.909	ENSNGAG00000008644	Lsm4	62	90.698	Nannospalax_galili
ENSCING00000007519	-	77	85.714	ENSNBRG00000022150	lsm4	52	92.941	Neolamprologus_brichardi
ENSCING00000007519	-	57	89.041	ENSMEUG00000013229	LSM4	57	88.732	Notamacropus_eugenii
ENSCING00000007519	-	61	90.909	ENSOPRG00000005575	LSM4	60	91.549	Ochotona_princeps
ENSCING00000007519	-	69	92.045	ENSODEG00000020549	-	62	91.860	Octodon_degus
ENSCING00000007519	-	69	81.818	ENSODEG00000004519	-	58	88.462	Octodon_degus
ENSCING00000007519	-	91	76.613	ENSONIG00000012724	lsm4	59	93.023	Oreochromis_niloticus
ENSCING00000007519	-	69	87.912	ENSOANG00000007434	LSM4	77	87.640	Ornithorhynchus_anatinus
ENSCING00000007519	-	91	77.419	ENSORLG00000008391	lsm4	60	91.860	Oryzias_latipes
ENSCING00000007519	-	91	77.419	ENSORLG00020014829	lsm4	60	91.860	Oryzias_latipes_hni
ENSCING00000007519	-	91	77.419	ENSORLG00015010205	lsm4	60	91.860	Oryzias_latipes_hsok
ENSCING00000007519	-	98	73.881	ENSOMEG00000003606	lsm4	60	94.186	Oryzias_melastigma
ENSCING00000007519	-	72	91.209	ENSOGAG00000027992	LSM4	59	90.698	Otolemur_garnettii
ENSCING00000007519	-	69	91.954	ENSOARG00000012553	LSM4	59	91.765	Ovis_aries
ENSCING00000007519	-	69	92.045	ENSPPAG00000044045	-	62	91.860	Pan_paniscus
ENSCING00000007519	-	69	92.045	ENSPPRG00000018264	LSM4	62	91.860	Panthera_pardus
ENSCING00000007519	-	69	91.954	ENSPTIG00000006306	LSM4	62	91.765	Panthera_tigris_altaica
ENSCING00000007519	-	69	92.045	ENSPTRG00000031470	LSM4	62	91.860	Pan_troglodytes
ENSCING00000007519	-	69	92.045	ENSPANG00000014399	LSM4	97	73.134	Papio_anubis
ENSCING00000007519	-	72	92.391	ENSPKIG00000006154	lsm4	61	93.023	Paramormyrops_kingsleyae
ENSCING00000007519	-	69	93.103	ENSPSIG00000012358	LSM4	62	92.941	Pelodiscus_sinensis
ENSCING00000007519	-	69	90.909	ENSPEMG00000001358	Lsm4	60	92.771	Peromyscus_maniculatus_bairdii
ENSCING00000007519	-	86	82.569	ENSPLAG00000016267	lsm4	60	93.023	Poecilia_latipinna
ENSCING00000007519	-	90	81.513	ENSPMEG00000016378	lsm4	62	91.860	Poecilia_mexicana
ENSCING00000007519	-	69	92.045	ENSPPYG00000009736	LSM4	62	91.860	Pongo_abelii
ENSCING00000007519	-	57	90.411	ENSPCAG00000008513	LSM4	57	90.141	Procavia_capensis
ENSCING00000007519	-	72	91.304	ENSPCOG00000019837	LSM4	62	91.860	Propithecus_coquereli
ENSCING00000007519	-	69	92.045	ENSPVAG00000015383	LSM4	62	91.860	Pteropus_vampyrus
ENSCING00000007519	-	91	76.613	ENSPNYG00000016794	lsm4	59	93.023	Pundamilia_nyererei
ENSCING00000007519	-	72	92.308	ENSPNAG00000016598	lsm4	63	92.941	Pygocentrus_nattereri
ENSCING00000007519	-	69	90.909	ENSRNOG00000019572	Lsm4	60	92.771	Rattus_norvegicus
ENSCING00000007519	-	69	92.045	ENSRBIG00000024717	LSM4	97	72.464	Rhinopithecus_bieti
ENSCING00000007519	-	69	92.045	ENSRROG00000045706	LSM4	97	72.464	Rhinopithecus_roxellana
ENSCING00000007519	-	58	91.892	ENSSBOG00000022455	LSM4	58	91.667	Saimiri_boliviensis_boliviensis
ENSCING00000007519	-	69	93.182	ENSSHAG00000011559	LSM4	62	93.023	Sarcophilus_harrisii
ENSCING00000007519	-	72	92.391	ENSSFOG00015021067	lsm4	61	93.023	Scleropages_formosus
ENSCING00000007519	-	78	85.859	ENSSMAG00000021020	lsm4	57	93.023	Scophthalmus_maximus
ENSCING00000007519	-	76	87.629	ENSSDUG00000009588	lsm4	51	93.023	Seriola_dumerili
ENSCING00000007519	-	76	87.629	ENSSLDG00000006827	lsm4	51	93.023	Seriola_lalandi_dorsalis
ENSCING00000007519	-	69	93.103	ENSSPUG00000010166	LSM4	55	92.941	Sphenodon_punctatus
ENSCING00000007519	-	72	92.391	ENSSPAG00000011615	lsm4	57	93.023	Stegastes_partitus
ENSCING00000007519	-	69	92.045	ENSSSCG00000034314	LSM4	62	91.860	Sus_scrofa
ENSCING00000007519	-	96	74.046	ENSTRUG00000021737	lsm4	60	94.186	Takifugu_rubripes
ENSCING00000007519	-	91	76.800	ENSTNIG00000010191	lsm4	60	93.023	Tetraodon_nigroviridis
ENSCING00000007519	-	69	92.045	ENSUAMG00000000665	LSM4	71	91.860	Ursus_americanus
ENSCING00000007519	-	69	92.045	ENSUMAG00000009013	LSM4	62	91.860	Ursus_maritimus
ENSCING00000007519	-	72	93.478	ENSXETG00000024933	lsm4	62	94.186	Xenopus_tropicalis