EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007717 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5611 bases
Position: chrHT000037.1:182057-187667
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000015847	PPR	PF01535.20	1.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000015847	-	2068	-	ENSCINP00000015847	588 (aa)	-	F6ZJ82

Gene Model

Click here to download ENSCING00000007717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007717's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007717	-	97	31.695	ENSG00000106246	PTCD1	82	31.588	Homo_sapiens
ENSCING00000007717	-	97	31.695	ENSG00000248919	ATP5MF-PTCD1	77	31.588	Homo_sapiens
ENSCING00000007717	-	97	31.376	ENSAMEG00000006224	-	77	31.208	Ailuropoda_melanoleuca
ENSCING00000007717	-	92	30.331	ENSACIG00000017861	ptcd1	76	30.331	Amphilophus_citrinellus
ENSCING00000007717	-	87	30.077	ENSAOCG00000022617	ptcd1	75	30.077	Amphiprion_ocellaris
ENSCING00000007717	-	91	30.713	ENSAPEG00000022632	ptcd1	74	30.713	Amphiprion_percula
ENSCING00000007717	-	97	32.014	ENSAPLG00000006862	-	90	31.842	Anas_platyrhynchos
ENSCING00000007717	-	73	41.121	ENSACAG00000012871	-	57	40.376	Anolis_carolinensis
ENSCING00000007717	-	91	31.667	ENSANAG00000035790	-	78	31.481	Aotus_nancymaae
ENSCING00000007717	-	77	39.286	ENSAMXG00000037292	ptcd1	78	30.233	Astyanax_mexicanus
ENSCING00000007717	-	93	32.136	ENSCJAG00000015815	-	78	31.957	Callithrix_jacchus
ENSCING00000007717	-	91	31.123	ENSCHIG00000027000	-	82	30.756	Capra_hircus
ENSCING00000007717	-	91	31.127	ENSTSYG00000029495	-	83	32.215	Carlito_syrichta
ENSCING00000007717	-	93	31.369	ENSCAPG00000014660	-	88	30.984	Cavia_aperea
ENSCING00000007717	-	93	31.652	ENSCPOG00000001780	-	83	31.148	Cavia_porcellus
ENSCING00000007717	-	93	32.734	ENSCCAG00000034025	-	83	32.149	Cebus_capucinus
ENSCING00000007717	-	90	32.288	ENSCATG00000040859	-	82	31.409	Cercocebus_atys
ENSCING00000007717	-	91	31.429	ENSCLAG00000006354	-	83	30.820	Chinchilla_lanigera
ENSCING00000007717	-	87	32.177	ENSCSAG00000017794	-	82	31.449	Chlorocebus_sabaeus
ENSCING00000007717	-	75	42.056	ENSCPBG00000020866	-	66	37.079	Chrysemys_picta_bellii
ENSCING00000007717	-	90	31.919	ENSCANG00000023441	-	83	31.134	Colobus_angolensis_palliatus
ENSCING00000007717	-	98	31.208	ENSCGRG00001023686	Ptcd1	83	30.872	Cricetulus_griseus_chok1gshd
ENSCING00000007717	-	98	31.208	ENSCGRG00000015031	Ptcd1	82	30.872	Cricetulus_griseus_crigri
ENSCING00000007717	-	96	30.070	ENSCVAG00000003621	ptcd1	83	30.070	Cyprinodon_variegatus
ENSCING00000007717	-	90	30.055	ENSDARG00000076176	ptcd1	76	30.055	Danio_rerio
ENSCING00000007717	-	97	30.471	ENSDNOG00000009957	-	82	30.486	Dasypus_novemcinctus
ENSCING00000007717	-	91	31.985	ENSDORG00000000740	Ptcd1	84	30.808	Dipodomys_ordii
ENSCING00000007717	-	71	38.532	ENSEBUG00000014515	ptcd1	67	35.567	Eptatretus_burgeri
ENSCING00000007717	-	91	30.357	ENSECAG00000016617	-	82	30.354	Equus_caballus
ENSCING00000007717	-	95	30.324	ENSELUG00000016517	ptcd1	76	30.324	Esox_lucius
ENSCING00000007717	-	97	31.553	ENSFCAG00000015069	-	83	31.386	Felis_catus
ENSCING00000007717	-	91	32.379	ENSFALG00000013803	-	76	31.408	Ficedula_albicollis
ENSCING00000007717	-	77	41.667	ENSGALG00000004711	-	63	41.228	Gallus_gallus
ENSCING00000007717	-	73	41.593	ENSGAGG00000021832	-	63	41.150	Gopherus_agassizii
ENSCING00000007717	-	97	31.516	ENSGGOG00000015123	-	82	30.993	Gorilla_gorilla
ENSCING00000007717	-	91	32.541	ENSSTOG00000001682	-	82	31.780	Ictidomys_tridecemlineatus
ENSCING00000007717	-	93	30.601	ENSKMAG00000008708	ptcd1	78	30.397	Kryptolebias_marmoratus
ENSCING00000007717	-	91	30.000	ENSLACG00000011172	ptcd1	77	30.018	Latimeria_chalumnae
ENSCING00000007717	-	98	31.746	ENSLOCG00000004833	ptcd1	92	30.478	Lepisosteus_oculatus
ENSCING00000007717	-	90	32.299	ENSLAFG00000002588	-	75	32.117	Loxodonta_africana
ENSCING00000007717	-	90	32.472	ENSMFAG00000041324	-	82	31.579	Macaca_fascicularis
ENSCING00000007717	-	90	32.472	ENSMMUG00000030408	-	82	31.579	Macaca_mulatta
ENSCING00000007717	-	90	32.288	ENSMNEG00000043786	-	82	31.409	Macaca_nemestrina
ENSCING00000007717	-	68	37.349	ENSMLEG00000031179	-	73	33.803	Mandrillus_leucophaeus
ENSCING00000007717	-	99	30.612	ENSMAMG00000007623	ptcd1	79	30.612	Mastacembelus_armatus
ENSCING00000007717	-	91	32.037	ENSMGAG00000004211	-	71	31.852	Meleagris_gallopavo
ENSCING00000007717	-	91	30.165	ENSMICG00000017428	-	83	30.201	Microcebus_murinus
ENSCING00000007717	-	98	30.795	ENSMODG00000001350	-	81	30.629	Monodelphis_domestica
ENSCING00000007717	-	91	30.699	MGP_CAROLIEiJ_G0028011	Ptcd1	76	30.515	Mus_caroli
ENSCING00000007717	-	73	39.252	ENSMUSG00000029624	Ptcd1	83	30.236	Mus_musculus
ENSCING00000007717	-	91	31.091	MGP_PahariEiJ_G0024580	Ptcd1	83	30.435	Mus_pahari
ENSCING00000007717	-	91	30.515	MGP_SPRETEiJ_G0029012	Ptcd1	76	30.699	Mus_spretus
ENSCING00000007717	-	92	30.144	ENSNBRG00000010079	ptcd1	72	30.144	Neolamprologus_brichardi
ENSCING00000007717	-	87	30.948	ENSNLEG00000011060	-	86	30.888	Nomascus_leucogenys
ENSCING00000007717	-	98	32.269	ENSMEUG00000006930	-	84	32.101	Notamacropus_eugenii
ENSCING00000007717	-	76	49.231	ENSOPRG00000013647	-	66	44.304	Ochotona_princeps
ENSCING00000007717	-	93	30.986	ENSOCUG00000010584	-	76	30.810	Oryctolagus_cuniculus
ENSCING00000007717	-	94	30.357	ENSORLG00020000988	ptcd1	80	30.357	Oryzias_latipes_hni
ENSCING00000007717	-	92	30.127	ENSOMEG00000020627	ptcd1	78	30.127	Oryzias_melastigma
ENSCING00000007717	-	91	31.423	ENSOGAG00000010877	-	84	30.795	Otolemur_garnettii
ENSCING00000007717	-	68	40.571	ENSOARG00000018676	-	65	37.445	Ovis_aries
ENSCING00000007717	-	95	31.424	ENSPPAG00000036024	-	82	31.081	Pan_paniscus
ENSCING00000007717	-	97	31.667	ENSPPRG00000003478	-	83	31.500	Panthera_pardus
ENSCING00000007717	-	95	31.162	ENSPTRG00000019452	-	82	30.822	Pan_troglodytes
ENSCING00000007717	-	90	32.472	ENSPANG00000016730	-	82	31.579	Papio_anubis
ENSCING00000007717	-	75	40.845	ENSPSIG00000011184	-	81	36.471	Pelodiscus_sinensis
ENSCING00000007717	-	99	31.588	ENSPCIG00000024778	-	82	31.424	Phascolarctos_cinereus
ENSCING00000007717	-	97	31.399	ENSPPYG00000017377	-	88	31.229	Pongo_abelii
ENSCING00000007717	-	83	38.261	ENSPCAG00000001852	-	77	38.261	Procavia_capensis
ENSCING00000007717	-	91	30.165	ENSPCOG00000018596	-	83	30.588	Propithecus_coquereli
ENSCING00000007717	-	90	31.985	ENSPNAG00000014931	ptcd1	79	31.439	Pygocentrus_nattereri
ENSCING00000007717	-	91	31.455	ENSRNOG00000000987	Ptcd1	84	30.821	Rattus_norvegicus
ENSCING00000007717	-	90	32.110	ENSRBIG00000043393	-	83	31.313	Rhinopithecus_bieti
ENSCING00000007717	-	90	32.169	ENSRROG00000036420	-	83	31.366	Rhinopithecus_roxellana
ENSCING00000007717	-	93	31.972	ENSSBOG00000024114	-	83	31.323	Saimiri_boliviensis_boliviensis
ENSCING00000007717	-	98	31.940	ENSSHAG00000011376	-	89	31.658	Sarcophilus_harrisii
ENSCING00000007717	-	99	30.449	ENSSDUG00000015671	ptcd1	83	30.449	Seriola_dumerili
ENSCING00000007717	-	91	30.877	ENSSPUG00000003540	-	75	31.228	Sphenodon_punctatus
ENSCING00000007717	-	92	30.147	ENSSPAG00000011049	ptcd1	75	30.108	Stegastes_partitus
ENSCING00000007717	-	93	31.373	ENSSSCG00000007622	-	87	30.808	Sus_scrofa
ENSCING00000007717	-	91	33.088	ENSTGUG00000007563	-	87	32.904	Taeniopygia_guttata
ENSCING00000007717	-	91	30.826	ENSTRUG00000013471	ptcd1	72	30.309	Takifugu_rubripes
ENSCING00000007717	-	97	30.378	ENSTBEG00000011021	-	83	30.213	Tupaia_belangeri