EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007875 (Gene tree)
Gene ID: 100181920
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1095 bases
Position: chr1:5681616-5682710
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000016133	RTC	PF01137.21	1.1e-82	1	1
ENSCINP00000016133	RTC_insert	PF05189.13	1.4e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000016133	-	1095	-	ENSCINP00000016133	364 (aa)	-	F6TGX7

Gene Model

Click here to download ENSCING00000007875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007875's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007875	-	55	30.374	ENSG00000120158	RCL1	96	30.374	Homo_sapiens
ENSCING00000007875	-	98	56.233	ENSG00000137996	RTCA	98	56.233	Homo_sapiens
ENSCING00000007875	-	99	55.125	ENSAPOG00000001345	rtca	98	55.125	Acanthochromis_polyacanthus
ENSCING00000007875	-	73	56.506	ENSAMEG00000008855	RTCA	100	56.506	Ailuropoda_melanoleuca
ENSCING00000007875	-	98	55.153	ENSACIG00000019643	rtca	98	55.153	Amphilophus_citrinellus
ENSCING00000007875	-	98	55.432	ENSAOCG00000014979	rtca	98	55.432	Amphiprion_ocellaris
ENSCING00000007875	-	98	55.432	ENSAPEG00000006945	rtca	98	55.432	Amphiprion_percula
ENSCING00000007875	-	96	56.571	ENSATEG00000006315	rtca	96	56.571	Anabas_testudineus
ENSCING00000007875	-	96	51.275	ENSAPLG00000015430	RTCA	100	51.275	Anas_platyrhynchos
ENSCING00000007875	-	98	55.679	ENSANAG00000025446	RTCA	98	55.679	Aotus_nancymaae
ENSCING00000007875	-	99	54.670	ENSACLG00000020770	rtca	99	54.670	Astatotilapia_calliptera
ENSCING00000007875	-	99	54.945	ENSAMXG00000043271	rtca	99	54.945	Astyanax_mexicanus
ENSCING00000007875	-	98	55.556	ENSBTAG00000006321	RTCA	98	55.556	Bos_taurus
ENSCING00000007875	-	98	55.679	ENSCJAG00000003398	RTCA	98	55.679	Callithrix_jacchus
ENSCING00000007875	-	90	30.473	ENSCJAG00000011202	RCL1	95	30.178	Callithrix_jacchus
ENSCING00000007875	-	98	56.389	ENSCAFG00000020010	RTCA	67	56.389	Canis_familiaris
ENSCING00000007875	-	98	56.389	ENSCAFG00020011528	RTCA	56	56.389	Canis_lupus_dingo
ENSCING00000007875	-	98	55.556	ENSCHIG00000018937	RTCA	98	55.556	Capra_hircus
ENSCING00000007875	-	98	55.278	ENSTSYG00000011305	RTCA	98	55.278	Carlito_syrichta
ENSCING00000007875	-	98	55.679	ENSCCAG00000021844	RTCA	98	55.679	Cebus_capucinus
ENSCING00000007875	-	98	53.743	ENSCATG00000019364	RTCA	100	54.839	Cercocebus_atys
ENSCING00000007875	-	86	54.890	ENSCLAG00000006125	RTCA	100	54.890	Chinchilla_lanigera
ENSCING00000007875	-	98	55.956	ENSCSAG00000001509	RTCA	98	55.956	Chlorocebus_sabaeus
ENSCING00000007875	-	98	55.866	ENSCHOG00000005211	RTCA	98	55.866	Choloepus_hoffmanni
ENSCING00000007875	-	99	53.846	ENSCPBG00000026658	RTCA	99	54.023	Chrysemys_picta_bellii
ENSCING00000007875	-	100	93.132	ENSCSAVG00000007269	-	100	93.132	Ciona_savignyi
ENSCING00000007875	-	98	55.956	ENSCANG00000040106	RTCA	98	55.956	Colobus_angolensis_palliatus
ENSCING00000007875	-	73	55.390	ENSCGRG00001013163	Rtca	85	55.390	Cricetulus_griseus_chok1gshd
ENSCING00000007875	-	99	54.420	ENSCSEG00000000530	rtca	98	54.420	Cynoglossus_semilaevis
ENSCING00000007875	-	98	45.000	ENSCVAG00000021809	rtca	98	45.000	Cyprinodon_variegatus
ENSCING00000007875	-	99	55.096	ENSDARG00000002215	rtca	99	55.096	Danio_rerio
ENSCING00000007875	-	66	30.350	ENSDNOG00000019911	RCL1	96	30.000	Dasypus_novemcinctus
ENSCING00000007875	-	98	55.307	ENSDNOG00000000456	RTCA	98	55.307	Dasypus_novemcinctus
ENSCING00000007875	-	98	56.389	ENSDORG00000005448	Rtca	98	56.389	Dipodomys_ordii
ENSCING00000007875	-	99	37.500	FBgn0025630	Rtca	99	37.500	Drosophila_melanogaster
ENSCING00000007875	-	94	46.087	ENSEBUG00000008556	rtca	94	46.087	Eptatretus_burgeri
ENSCING00000007875	-	98	55.556	ENSEASG00005015926	RTCA	98	55.556	Equus_asinus_asinus
ENSCING00000007875	-	84	30.915	ENSECAG00000015973	RCL1	95	30.352	Equus_caballus
ENSCING00000007875	-	98	55.556	ENSECAG00000019831	RTCA	98	55.556	Equus_caballus
ENSCING00000007875	-	90	51.471	ENSEEUG00000001165	RTCA	98	51.471	Erinaceus_europaeus
ENSCING00000007875	-	99	53.719	ENSELUG00000003741	rtca	99	53.719	Esox_lucius
ENSCING00000007875	-	98	56.111	ENSFCAG00000024460	RTCA	98	56.111	Felis_catus
ENSCING00000007875	-	94	54.971	ENSFALG00000002443	RTCA	92	54.971	Ficedula_albicollis
ENSCING00000007875	-	98	55.028	ENSFDAG00000012070	-	98	55.028	Fukomys_damarensis
ENSCING00000007875	-	96	42.978	ENSFDAG00000016084	-	98	42.978	Fukomys_damarensis
ENSCING00000007875	-	55	55.721	ENSFHEG00000002868	rtca	93	52.752	Fundulus_heteroclitus
ENSCING00000007875	-	98	55.710	ENSGMOG00000013264	rtca	98	55.710	Gadus_morhua
ENSCING00000007875	-	99	52.747	ENSGALG00000005277	RTCA	99	52.747	Gallus_gallus
ENSCING00000007875	-	98	57.939	ENSGAFG00000011853	rtca	98	57.939	Gambusia_affinis
ENSCING00000007875	-	99	55.402	ENSGACG00000013497	rtca	99	55.402	Gasterosteus_aculeatus
ENSCING00000007875	-	80	52.740	ENSGAGG00000023306	RTCA	99	52.740	Gopherus_agassizii
ENSCING00000007875	-	98	55.679	ENSGGOG00000044018	-	98	55.679	Gorilla_gorilla
ENSCING00000007875	-	98	56.233	ENSGGOG00000009546	-	100	55.484	Gorilla_gorilla
ENSCING00000007875	-	99	54.670	ENSHBUG00000002114	rtca	99	54.670	Haplochromis_burtoni
ENSCING00000007875	-	98	55.028	ENSHGLG00000002617	RTCA	98	55.028	Heterocephalus_glaber_female
ENSCING00000007875	-	98	55.028	ENSHGLG00100006056	RTCA	98	55.028	Heterocephalus_glaber_male
ENSCING00000007875	-	98	54.318	ENSHCOG00000020628	rtca	88	54.318	Hippocampus_comes
ENSCING00000007875	-	99	55.495	ENSIPUG00000024803	rtca	99	55.495	Ictalurus_punctatus
ENSCING00000007875	-	98	51.667	ENSSTOG00000013528	-	98	51.667	Ictidomys_tridecemlineatus
ENSCING00000007875	-	99	50.411	ENSSTOG00000033099	-	99	50.411	Ictidomys_tridecemlineatus
ENSCING00000007875	-	98	44.444	ENSJJAG00000016178	Rtca	98	44.444	Jaculus_jaculus
ENSCING00000007875	-	98	55.989	ENSKMAG00000006651	rtca	98	55.989	Kryptolebias_marmoratus
ENSCING00000007875	-	98	55.153	ENSLBEG00000028971	rtca	99	55.153	Labrus_bergylta
ENSCING00000007875	-	87	54.062	ENSLBEG00000002448	-	99	54.062	Labrus_bergylta
ENSCING00000007875	-	98	56.267	ENSLACG00000013666	RTCA	98	56.267	Latimeria_chalumnae
ENSCING00000007875	-	98	55.028	ENSLOCG00000000093	rtca	98	55.028	Lepisosteus_oculatus
ENSCING00000007875	-	98	55.307	ENSLAFG00000001473	RTCA	98	55.307	Loxodonta_africana
ENSCING00000007875	-	95	30.194	ENSLAFG00000017495	RCL1	95	30.194	Loxodonta_africana
ENSCING00000007875	-	98	55.956	ENSMFAG00000034132	RTCA	98	55.956	Macaca_fascicularis
ENSCING00000007875	-	98	55.956	ENSMMUG00000019105	RTCA	98	55.956	Macaca_mulatta
ENSCING00000007875	-	84	30.938	ENSMNEG00000012288	RCL1	92	30.938	Macaca_nemestrina
ENSCING00000007875	-	84	55.161	ENSMNEG00000037163	RTCA	100	55.161	Macaca_nemestrina
ENSCING00000007875	-	98	45.706	ENSMLEG00000042151	RTCA	98	45.706	Mandrillus_leucophaeus
ENSCING00000007875	-	98	56.546	ENSMAMG00000016536	rtca	98	56.546	Mastacembelus_armatus
ENSCING00000007875	-	99	54.670	ENSMZEG00005017945	rtca	99	54.670	Maylandia_zebra
ENSCING00000007875	-	87	52.516	ENSMGAG00000006892	RTCA	99	52.516	Meleagris_gallopavo
ENSCING00000007875	-	98	55.000	ENSMAUG00000008488	Rtca	98	55.000	Mesocricetus_auratus
ENSCING00000007875	-	84	54.693	ENSMICG00000008643	RTCA	100	54.693	Microcebus_murinus
ENSCING00000007875	-	98	55.278	ENSMOCG00000016660	Rtca	98	55.278	Microtus_ochrogaster
ENSCING00000007875	-	95	30.137	ENSMOCG00000012145	Rcl1	95	30.137	Microtus_ochrogaster
ENSCING00000007875	-	84	55.195	ENSMMOG00000007750	rtca	100	55.195	Mola_mola
ENSCING00000007875	-	98	56.787	ENSMODG00000003557	RTCA	98	56.787	Monodelphis_domestica
ENSCING00000007875	-	98	56.267	ENSMALG00000020844	rtca	98	56.267	Monopterus_albus
ENSCING00000007875	-	98	55.556	MGP_CAROLIEiJ_G0025565	Rtca	98	55.556	Mus_caroli
ENSCING00000007875	-	98	55.000	ENSMUSG00000000339	Rtca	98	55.000	Mus_musculus
ENSCING00000007875	-	98	55.833	MGP_PahariEiJ_G0027011	Rtca	98	55.833	Mus_pahari
ENSCING00000007875	-	98	55.556	MGP_SPRETEiJ_G0026515	Rtca	98	55.556	Mus_spretus
ENSCING00000007875	-	99	55.616	ENSMPUG00000012119	RTCA	99	55.616	Mustela_putorius_furo
ENSCING00000007875	-	98	55.402	ENSMLUG00000009922	RTCA	98	55.402	Myotis_lucifugus
ENSCING00000007875	-	98	55.000	ENSNGAG00000011540	Rtca	98	55.000	Nannospalax_galili
ENSCING00000007875	-	99	55.220	ENSNBRG00000003062	rtca	99	55.220	Neolamprologus_brichardi
ENSCING00000007875	-	98	56.233	ENSNLEG00000031426	RTCA	98	56.233	Nomascus_leucogenys
ENSCING00000007875	-	73	53.160	ENSOPRG00000012092	RTCA	71	53.160	Ochotona_princeps
ENSCING00000007875	-	95	52.874	ENSODEG00000006990	RTCA	96	53.276	Octodon_degus
ENSCING00000007875	-	99	54.670	ENSONIG00000007753	rtca	99	54.670	Oreochromis_niloticus
ENSCING00000007875	-	86	53.628	ENSOANG00000012055	RTCA	98	53.628	Ornithorhynchus_anatinus
ENSCING00000007875	-	98	56.389	ENSOCUG00000014247	RTCA	98	56.389	Oryctolagus_cuniculus
ENSCING00000007875	-	98	56.825	ENSORLG00000013605	rtca	98	56.825	Oryzias_latipes
ENSCING00000007875	-	98	57.103	ENSORLG00020001904	rtca	98	57.103	Oryzias_latipes_hni
ENSCING00000007875	-	98	57.103	ENSORLG00015021064	rtca	98	57.103	Oryzias_latipes_hsok
ENSCING00000007875	-	98	56.825	ENSOMEG00000000756	rtca	98	56.825	Oryzias_melastigma
ENSCING00000007875	-	99	51.233	ENSOGAG00000005627	RTCA	99	51.233	Otolemur_garnettii
ENSCING00000007875	-	87	54.403	ENSOARG00000018122	RTCA	100	54.403	Ovis_aries
ENSCING00000007875	-	98	54.545	ENSPPAG00000035119	RTCA	100	55.806	Pan_paniscus
ENSCING00000007875	-	98	56.111	ENSPPRG00000000350	RTCA	98	56.111	Panthera_pardus
ENSCING00000007875	-	98	55.833	ENSPTIG00000012816	RTCA	98	55.833	Panthera_tigris_altaica
ENSCING00000007875	-	98	54.011	ENSPTRG00000001004	RTCA	100	55.161	Pan_troglodytes
ENSCING00000007875	-	98	55.278	ENSPANG00000000346	RTCA	98	55.278	Papio_anubis
ENSCING00000007875	-	99	54.396	ENSPKIG00000001653	rtca	99	54.396	Paramormyrops_kingsleyae
ENSCING00000007875	-	99	54.121	ENSPSIG00000011408	RTCA	99	54.121	Pelodiscus_sinensis
ENSCING00000007875	-	98	55.278	ENSPEMG00000018582	Rtca	98	55.278	Peromyscus_maniculatus_bairdii
ENSCING00000007875	-	98	48.468	ENSPMAG00000009110	rtca	98	48.468	Petromyzon_marinus
ENSCING00000007875	-	98	56.389	ENSPCIG00000007684	RTCA	98	56.389	Phascolarctos_cinereus
ENSCING00000007875	-	98	56.944	ENSPFOG00000004824	rtca	98	56.944	Poecilia_formosa
ENSCING00000007875	-	98	57.103	ENSPLAG00000011753	rtca	98	57.103	Poecilia_latipinna
ENSCING00000007875	-	98	57.103	ENSPMEG00000020469	rtca	98	57.103	Poecilia_mexicana
ENSCING00000007875	-	98	57.382	ENSPREG00000001365	rtca	98	57.382	Poecilia_reticulata
ENSCING00000007875	-	98	55.956	ENSPPYG00000001115	RTCA	98	55.956	Pongo_abelii
ENSCING00000007875	-	98	52.778	ENSPCAG00000005076	RTCA	98	52.778	Procavia_capensis
ENSCING00000007875	-	98	56.510	ENSPCOG00000005603	RTCA	98	56.510	Propithecus_coquereli
ENSCING00000007875	-	98	54.011	ENSPVAG00000009478	RTCA	98	54.011	Pteropus_vampyrus
ENSCING00000007875	-	99	54.670	ENSPNYG00000004722	rtca	99	54.670	Pundamilia_nyererei
ENSCING00000007875	-	99	54.945	ENSPNAG00000022270	rtca	99	54.945	Pygocentrus_nattereri
ENSCING00000007875	-	98	55.000	ENSRNOG00000014575	Rtca	98	55.000	Rattus_norvegicus
ENSCING00000007875	-	98	53.743	ENSRBIG00000041180	RTCA	100	54.839	Rhinopithecus_bieti
ENSCING00000007875	-	95	30.220	ENSRBIG00000035818	RCL1	95	30.220	Rhinopithecus_bieti
ENSCING00000007875	-	98	55.679	ENSRROG00000024929	RTCA	98	55.679	Rhinopithecus_roxellana
ENSCING00000007875	-	98	55.125	ENSSBOG00000028626	RTCA	98	55.125	Saimiri_boliviensis_boliviensis
ENSCING00000007875	-	84	30.818	ENSSBOG00000026369	RCL1	85	30.503	Saimiri_boliviensis_boliviensis
ENSCING00000007875	-	98	56.944	ENSSHAG00000001758	RTCA	98	56.944	Sarcophilus_harrisii
ENSCING00000007875	-	98	54.596	ENSSMAG00000014680	rtca	97	54.596	Scophthalmus_maximus
ENSCING00000007875	-	98	55.710	ENSSDUG00000015585	rtca	99	55.191	Seriola_dumerili
ENSCING00000007875	-	96	56.000	ENSSLDG00000018985	rtca	95	56.000	Seriola_lalandi_dorsalis
ENSCING00000007875	-	86	52.997	ENSSARG00000013993	RTCA	100	52.997	Sorex_araneus
ENSCING00000007875	-	98	55.710	ENSSPAG00000011938	rtca	98	55.710	Stegastes_partitus
ENSCING00000007875	-	98	56.111	ENSSSCG00000006865	RTCA	98	56.111	Sus_scrofa
ENSCING00000007875	-	99	54.396	ENSTGUG00000005154	RTCA	99	54.396	Taeniopygia_guttata
ENSCING00000007875	-	98	56.546	ENSTRUG00000008799	rtca	98	56.546	Takifugu_rubripes
ENSCING00000007875	-	99	56.986	ENSTNIG00000004725	rtca	99	56.986	Tetraodon_nigroviridis
ENSCING00000007875	-	57	46.154	ENSTBEG00000000943	RTCA	80	36.975	Tupaia_belangeri
ENSCING00000007875	-	98	52.011	ENSTTRG00000015327	RTCA	98	52.011	Tursiops_truncatus
ENSCING00000007875	-	92	56.119	ENSUAMG00000017265	RTCA	94	56.119	Ursus_americanus
ENSCING00000007875	-	98	56.111	ENSUMAG00000007881	RTCA	98	56.111	Ursus_maritimus
ENSCING00000007875	-	86	47.950	ENSVPAG00000001039	RTCA	84	47.950	Vicugna_pacos
ENSCING00000007875	-	98	56.389	ENSVVUG00000022041	RTCA	66	56.389	Vulpes_vulpes
ENSCING00000007875	-	99	49.176	ENSXETG00000031661	RTCA	99	49.176	Xenopus_tropicalis
ENSCING00000007875	-	98	50.278	ENSXCOG00000008002	rtca	98	50.278	Xiphophorus_couchianus
ENSCING00000007875	-	98	57.660	ENSXMAG00000005482	rtca	98	57.660	Xiphophorus_maculatus