EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000007881 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 2355 bases
Position: chr7:2291205-2293559
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000016141	Beta-Casp	PF10996.8	5.5e-20	1	1
ENSCINP00000016141	Lactamase_B	PF00753.27	2.6e-07	1	1
ENSCINP00000016141	RMMBL	PF07521.12	1.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000016141	-	2355	-	ENSCINP00000016141	784 (aa)	-	F6TGK6

Gene Model

Click here to download ENSCING00000007881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007881's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000007881	-	100	54.500	ENSG00000165934	CPSF2	100	62.500	Homo_sapiens
ENSCING00000007881	-	100	52.351	ENSAPOG00000001242	cpsf2	100	52.847	Acanthochromis_polyacanthus
ENSCING00000007881	-	100	52.795	ENSACIG00000009331	cpsf2	100	53.540	Amphilophus_citrinellus
ENSCING00000007881	-	100	52.488	ENSAOCG00000014095	cpsf2	100	52.985	Amphiprion_ocellaris
ENSCING00000007881	-	100	52.488	ENSAPEG00000009158	cpsf2	100	52.985	Amphiprion_percula
ENSCING00000007881	-	96	51.933	ENSATEG00000017644	cpsf2	99	49.088	Anabas_testudineus
ENSCING00000007881	-	100	53.990	ENSAPLG00000006330	CPSF2	100	54.364	Anas_platyrhynchos
ENSCING00000007881	-	100	54.375	ENSACAG00000009245	CPSF2	100	54.750	Anolis_carolinensis
ENSCING00000007881	-	100	54.421	ENSANAG00000022915	CPSF2	100	54.795	Aotus_nancymaae
ENSCING00000007881	-	100	53.102	ENSAMXG00000018696	cpsf2	100	53.722	Astyanax_mexicanus
ENSCING00000007881	-	100	54.545	ENSBTAG00000010227	CPSF2	100	54.919	Bos_taurus
ENSCING00000007881	-	100	39.397	WBGene00017313	cpsf-2	100	39.931	Caenorhabditis_elegans
ENSCING00000007881	-	100	54.421	ENSCJAG00000018069	CPSF2	100	54.795	Callithrix_jacchus
ENSCING00000007881	-	100	54.421	ENSCAFG00000010909	CPSF2	100	54.795	Canis_familiaris
ENSCING00000007881	-	100	54.421	ENSCAFG00020020670	CPSF2	100	58.333	Canis_lupus_dingo
ENSCING00000007881	-	100	54.545	ENSCHIG00000023848	CPSF2	100	54.919	Capra_hircus
ENSCING00000007881	-	100	54.296	ENSTSYG00000009036	CPSF2	100	54.670	Carlito_syrichta
ENSCING00000007881	-	100	54.421	ENSCPOG00000010899	CPSF2	100	54.795	Cavia_porcellus
ENSCING00000007881	-	100	54.421	ENSCCAG00000028088	CPSF2	100	54.795	Cebus_capucinus
ENSCING00000007881	-	100	54.421	ENSCATG00000030132	CPSF2	100	54.795	Cercocebus_atys
ENSCING00000007881	-	100	54.421	ENSCLAG00000012404	CPSF2	100	54.795	Chinchilla_lanigera
ENSCING00000007881	-	100	54.421	ENSCSAG00000011300	CPSF2	100	54.795	Chlorocebus_sabaeus
ENSCING00000007881	-	92	62.168	ENSCHOG00000012904	CPSF2	93	62.781	Choloepus_hoffmanni
ENSCING00000007881	-	100	54.250	ENSCPBG00000008766	CPSF2	97	54.625	Chrysemys_picta_bellii
ENSCING00000007881	-	94	53.785	ENSCANG00000041651	CPSF2	100	54.183	Colobus_angolensis_palliatus
ENSCING00000007881	-	100	54.795	ENSCGRG00001006901	Cpsf2	100	54.919	Cricetulus_griseus_chok1gshd
ENSCING00000007881	-	100	54.795	ENSCGRG00000012416	Cpsf2	100	54.919	Cricetulus_griseus_crigri
ENSCING00000007881	-	100	52.298	ENSCSEG00000004116	cpsf2	100	52.547	Cynoglossus_semilaevis
ENSCING00000007881	-	100	52.475	ENSCVAG00000000095	cpsf2	100	53.043	Cyprinodon_variegatus
ENSCING00000007881	-	100	53.894	ENSDARG00000028971	cpsf2	100	53.894	Danio_rerio
ENSCING00000007881	-	100	54.421	ENSDNOG00000042757	CPSF2	100	54.795	Dasypus_novemcinctus
ENSCING00000007881	-	100	54.047	ENSDORG00000013709	Cpsf2	100	54.421	Dipodomys_ordii
ENSCING00000007881	-	100	47.625	FBgn0027873	Cpsf100	100	47.685	Drosophila_melanogaster
ENSCING00000007881	-	92	59.388	ENSETEG00000012123	CPSF2	93	60.000	Echinops_telfairi
ENSCING00000007881	-	53	54.976	ENSEBUG00000012098	cpsf2	93	54.976	Eptatretus_burgeri
ENSCING00000007881	-	84	69.521	ENSEASG00005021193	CPSF2	99	69.521	Equus_asinus_asinus
ENSCING00000007881	-	100	54.296	ENSECAG00000023935	CPSF2	100	54.670	Equus_caballus
ENSCING00000007881	-	100	53.506	ENSELUG00000008442	cpsf2	100	53.506	Esox_lucius
ENSCING00000007881	-	100	54.172	ENSFCAG00000007886	CPSF2	100	54.545	Felis_catus
ENSCING00000007881	-	100	54.364	ENSFALG00000002412	CPSF2	100	54.738	Ficedula_albicollis
ENSCING00000007881	-	100	54.421	ENSFDAG00000006327	CPSF2	100	54.795	Fukomys_damarensis
ENSCING00000007881	-	96	52.423	ENSFHEG00000015465	cpsf2	98	52.685	Fundulus_heteroclitus
ENSCING00000007881	-	100	52.956	ENSGMOG00000008761	cpsf2	100	52.956	Gadus_morhua
ENSCING00000007881	-	100	54.375	ENSGALG00000010783	CPSF2	100	54.750	Gallus_gallus
ENSCING00000007881	-	100	52.788	ENSGAFG00000001407	cpsf2	100	52.985	Gambusia_affinis
ENSCING00000007881	-	100	52.664	ENSGACG00000008418	cpsf2	100	53.416	Gasterosteus_aculeatus
ENSCING00000007881	-	100	54.250	ENSGAGG00000008287	CPSF2	100	54.625	Gopherus_agassizii
ENSCING00000007881	-	100	54.500	ENSGGOG00000011799	CPSF2	100	54.875	Gorilla_gorilla
ENSCING00000007881	-	100	52.580	ENSHBUG00000023466	cpsf2	100	53.071	Haplochromis_burtoni
ENSCING00000007881	-	100	54.421	ENSHGLG00000018311	CPSF2	100	54.795	Heterocephalus_glaber_female
ENSCING00000007881	-	100	54.421	ENSHGLG00100016460	CPSF2	100	54.795	Heterocephalus_glaber_male
ENSCING00000007881	-	100	52.723	ENSHCOG00000019527	cpsf2	98	53.589	Hippocampus_comes
ENSCING00000007881	-	100	52.978	ENSIPUG00000020857	cpsf2	100	53.598	Ictalurus_punctatus
ENSCING00000007881	-	100	54.421	ENSSTOG00000009528	CPSF2	100	54.795	Ictidomys_tridecemlineatus
ENSCING00000007881	-	100	54.682	ENSJJAG00000017925	Cpsf2	100	55.056	Jaculus_jaculus
ENSCING00000007881	-	100	52.985	ENSKMAG00000019429	cpsf2	100	53.483	Kryptolebias_marmoratus
ENSCING00000007881	-	100	47.153	ENSLBEG00000011585	cpsf2	100	52.094	Labrus_bergylta
ENSCING00000007881	-	100	54.364	ENSLACG00000019024	CPSF2	100	55.112	Latimeria_chalumnae
ENSCING00000007881	-	100	54.254	ENSLOCG00000014102	cpsf2	100	54.703	Lepisosteus_oculatus
ENSCING00000007881	-	100	54.489	ENSLAFG00000004891	CPSF2	100	54.863	Loxodonta_africana
ENSCING00000007881	-	100	54.421	ENSMFAG00000041212	CPSF2	100	54.795	Macaca_fascicularis
ENSCING00000007881	-	100	54.421	ENSMMUG00000000699	CPSF2	100	54.795	Macaca_mulatta
ENSCING00000007881	-	100	54.421	ENSMNEG00000031584	CPSF2	100	54.795	Macaca_nemestrina
ENSCING00000007881	-	100	54.421	ENSMLEG00000029394	CPSF2	100	54.795	Mandrillus_leucophaeus
ENSCING00000007881	-	100	52.174	ENSMAMG00000004235	cpsf2	100	52.795	Mastacembelus_armatus
ENSCING00000007881	-	100	52.736	ENSMZEG00005001769	cpsf2	100	53.234	Maylandia_zebra
ENSCING00000007881	-	100	54.432	ENSMGAG00000013122	CPSF2	100	54.806	Meleagris_gallopavo
ENSCING00000007881	-	100	54.919	ENSMAUG00000015160	Cpsf2	100	55.044	Mesocricetus_auratus
ENSCING00000007881	-	100	54.421	ENSMICG00000016441	CPSF2	100	54.795	Microcebus_murinus
ENSCING00000007881	-	100	54.795	ENSMOCG00000015372	Cpsf2	100	54.919	Microtus_ochrogaster
ENSCING00000007881	-	100	49.505	ENSMMOG00000015590	cpsf2	100	49.505	Mola_mola
ENSCING00000007881	-	100	54.500	ENSMODG00000002042	CPSF2	100	54.875	Monodelphis_domestica
ENSCING00000007881	-	100	50.683	ENSMALG00000022275	cpsf2	100	51.304	Monopterus_albus
ENSCING00000007881	-	100	54.670	ENSMUSG00000041781	Cpsf2	100	54.795	Mus_musculus
ENSCING00000007881	-	100	54.670	MGP_PahariEiJ_G0029791	Cpsf2	100	54.795	Mus_pahari
ENSCING00000007881	-	100	54.670	MGP_SPRETEiJ_G0018877	Cpsf2	100	54.795	Mus_spretus
ENSCING00000007881	-	100	54.421	ENSMPUG00000007617	CPSF2	98	54.795	Mustela_putorius_furo
ENSCING00000007881	-	100	55.125	ENSMLUG00000005570	CPSF2	100	55.125	Myotis_lucifugus
ENSCING00000007881	-	100	54.296	ENSNGAG00000020312	Cpsf2	100	54.670	Nannospalax_galili
ENSCING00000007881	-	100	52.580	ENSNBRG00000022402	cpsf2	100	53.071	Neolamprologus_brichardi
ENSCING00000007881	-	100	54.000	ENSNLEG00000017132	CPSF2	100	54.375	Nomascus_leucogenys
ENSCING00000007881	-	87	69.401	ENSMEUG00000008138	CPSF2	91	69.401	Notamacropus_eugenii
ENSCING00000007881	-	94	52.477	ENSOPRG00000008484	-	100	52.744	Ochotona_princeps
ENSCING00000007881	-	100	54.172	ENSODEG00000008682	CPSF2	100	54.545	Octodon_degus
ENSCING00000007881	-	100	52.826	ENSONIG00000005901	cpsf2	100	53.317	Oreochromis_niloticus
ENSCING00000007881	-	100	54.421	ENSOANG00000003822	CPSF2	100	54.795	Ornithorhynchus_anatinus
ENSCING00000007881	-	100	54.557	ENSOCUG00000005713	CPSF2	100	54.931	Oryctolagus_cuniculus
ENSCING00000007881	-	100	48.272	ENSORLG00000011628	cpsf2	100	49.689	Oryzias_latipes
ENSCING00000007881	-	100	52.723	ENSORLG00020016980	cpsf2	100	53.292	Oryzias_latipes_hni
ENSCING00000007881	-	100	52.723	ENSORLG00015011910	cpsf2	100	53.292	Oryzias_latipes_hsok
ENSCING00000007881	-	100	53.779	ENSOMEG00000022876	cpsf2	100	53.846	Oryzias_melastigma
ENSCING00000007881	-	100	52.547	ENSOARG00000012889	CPSF2	100	52.919	Ovis_aries
ENSCING00000007881	-	100	54.500	ENSPPAG00000039666	CPSF2	100	54.875	Pan_paniscus
ENSCING00000007881	-	99	54.115	ENSPPRG00000010869	CPSF2	100	54.489	Panthera_pardus
ENSCING00000007881	-	100	54.172	ENSPTIG00000021202	CPSF2	100	54.545	Panthera_tigris_altaica
ENSCING00000007881	-	100	54.500	ENSPTRG00000006651	CPSF2	100	54.875	Pan_troglodytes
ENSCING00000007881	-	100	54.421	ENSPANG00000017417	CPSF2	100	54.795	Papio_anubis
ENSCING00000007881	-	100	50.744	ENSPKIG00000021453	cpsf2	100	50.744	Paramormyrops_kingsleyae
ENSCING00000007881	-	100	53.875	ENSPSIG00000006289	CPSF2	100	54.250	Pelodiscus_sinensis
ENSCING00000007881	-	74	49.259	ENSPMGG00000002511	cpsf2	99	49.918	Periophthalmus_magnuspinnatus
ENSCING00000007881	-	100	54.670	ENSPEMG00000007917	Cpsf2	100	54.795	Peromyscus_maniculatus_bairdii
ENSCING00000007881	-	100	53.514	ENSPMAG00000006205	cpsf2	100	53.884	Petromyzon_marinus
ENSCING00000007881	-	100	54.500	ENSPCIG00000011393	CPSF2	100	54.875	Phascolarctos_cinereus
ENSCING00000007881	-	100	52.985	ENSPFOG00000018648	cpsf2	100	52.985	Poecilia_formosa
ENSCING00000007881	-	100	52.985	ENSPLAG00000019199	cpsf2	99	52.985	Poecilia_latipinna
ENSCING00000007881	-	96	52.510	ENSPMEG00000012100	cpsf2	100	52.294	Poecilia_mexicana
ENSCING00000007881	-	100	52.847	ENSPREG00000008960	cpsf2	100	53.168	Poecilia_reticulata
ENSCING00000007881	-	63	45.652	ENSPPYG00000029685	-	100	46.245	Pongo_abelii
ENSCING00000007881	-	100	54.625	ENSPCAG00000012477	CPSF2	100	55.000	Procavia_capensis
ENSCING00000007881	-	100	54.682	ENSPCOG00000026387	CPSF2	100	54.931	Propithecus_coquereli
ENSCING00000007881	-	59	71.958	ENSPVAG00000004223	CPSF2	64	71.958	Pteropus_vampyrus
ENSCING00000007881	-	100	52.422	ENSPNYG00000023356	cpsf2	100	52.919	Pundamilia_nyererei
ENSCING00000007881	-	100	53.789	ENSPNAG00000001849	cpsf2	100	54.286	Pygocentrus_nattereri
ENSCING00000007881	-	100	54.545	ENSRNOG00000005733	Cpsf2	100	54.670	Rattus_norvegicus
ENSCING00000007881	-	100	54.421	ENSRBIG00000044792	CPSF2	100	54.795	Rhinopithecus_bieti
ENSCING00000007881	-	100	54.421	ENSRROG00000034875	CPSF2	100	54.795	Rhinopithecus_roxellana
ENSCING00000007881	-	100	54.421	ENSSBOG00000024571	CPSF2	100	54.795	Saimiri_boliviensis_boliviensis
ENSCING00000007881	-	100	54.421	ENSSHAG00000010458	CPSF2	100	54.795	Sarcophilus_harrisii
ENSCING00000007881	-	100	54.208	ENSSFOG00015002117	cpsf2	100	54.342	Scleropages_formosus
ENSCING00000007881	-	100	52.795	ENSSMAG00000002001	cpsf2	100	53.094	Scophthalmus_maximus
ENSCING00000007881	-	100	52.547	ENSSDUG00000004084	cpsf2	100	53.043	Seriola_dumerili
ENSCING00000007881	-	100	53.043	ENSSLDG00000024330	cpsf2	100	52.919	Seriola_lalandi_dorsalis
ENSCING00000007881	-	54	73.333	ENSSARG00000009784	-	55	73.333	Sorex_araneus
ENSCING00000007881	-	100	54.693	ENSSPUG00000013485	CPSF2	100	55.069	Sphenodon_punctatus
ENSCING00000007881	-	100	52.222	ENSSPAG00000013284	cpsf2	100	53.086	Stegastes_partitus
ENSCING00000007881	-	100	54.432	ENSSSCG00000002447	CPSF2	100	54.806	Sus_scrofa
ENSCING00000007881	-	100	54.239	ENSTGUG00000012571	-	100	54.613	Taeniopygia_guttata
ENSCING00000007881	-	100	53.856	ENSTRUG00000003742	cpsf2	100	53.856	Takifugu_rubripes
ENSCING00000007881	-	100	52.956	ENSTNIG00000012228	cpsf2	100	53.474	Tetraodon_nigroviridis
ENSCING00000007881	-	82	57.099	ENSTBEG00000004530	CPSF2	84	57.562	Tupaia_belangeri
ENSCING00000007881	-	88	63.830	ENSTTRG00000008697	CPSF2	88	63.830	Tursiops_truncatus
ENSCING00000007881	-	100	54.421	ENSUAMG00000028071	CPSF2	100	54.795	Ursus_americanus
ENSCING00000007881	-	89	66.247	ENSUMAG00000005029	CPSF2	100	54.795	Ursus_maritimus
ENSCING00000007881	-	99	54.364	ENSVPAG00000003503	CPSF2	100	54.738	Vicugna_pacos
ENSCING00000007881	-	100	54.421	ENSVVUG00000024642	CPSF2	100	54.795	Vulpes_vulpes
ENSCING00000007881	-	100	54.125	ENSXETG00000010289	cpsf2	100	55.250	Xenopus_tropicalis
ENSCING00000007881	-	100	52.664	ENSXCOG00000001764	cpsf2	100	52.861	Xiphophorus_couchianus
ENSCING00000007881	-	100	52.912	ENSXMAG00000017048	cpsf2	100	53.109	Xiphophorus_maculatus