EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCING00000007884 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_intestinalis
Status
putative
Strand
Plus strand
Length
16416 bases
Position
chr7:2329888-2346303
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCINP00000016166RNA_pol_Rpb1_5PF04998.177.5e-9911
ENSCINP00000016166RNA_pol_Rpb1_4PF05000.173.4e-3711
ENSCINP00000016166RNA_pol_Rpb1_2PF00623.202.1e-7511
ENSCINP00000016166RNA_pol_Rpb1_3PF04983.185.4e-4911
ENSCINP00000016166RNA_pol_Rpb1_1PF04997.128.5e-10711
ENSCINP00000016166RNA_pol_Rpb1_7PF04990.121e-5511
ENSCINP00000016166RNA_pol_Rpb1_6PF04992.141.8e-6811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCINT00000016166-5634-ENSCINP000000161661814 (aa)-F6SUC2
Gene Model
Click here to download ENSCING00000007884's gene model file
Pathways
Pathway IDPathway NameSource
cin03020RNA polymeraseKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000007884's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCING00000007884-9477.599ENSAPOG00000006552polr2a8477.035Acanthochromis_polyacanthus
ENSCING00000007884-9976.533ENSAMEG00000016265-9976.274Ailuropoda_melanoleuca
ENSCING00000007884-9975.916ENSACIG00000015982polr2a9875.682Amphilophus_citrinellus
ENSCING00000007884-9976.164ENSAOCG00000004255polr2a9975.579Amphiprion_ocellaris
ENSCING00000007884-9977.537ENSAPEG00000012623polr2a9876.974Amphiprion_percula
ENSCING00000007884-9977.413ENSATEG00000019644polr2a9876.853Anabas_testudineus
ENSCING00000007884-9977.061ENSACAG00000014561POLR2A9976.792Anolis_carolinensis
ENSCING00000007884-9976.689ENSANAG00000020093-9976.428Aotus_nancymaae
ENSCING00000007884-9977.166ENSACLG00000006735polr2a9876.610Astatotilapia_calliptera
ENSCING00000007884-9977.304ENSAMXG00000020046polr2a9876.746Astyanax_mexicanus
ENSCING00000007884-9976.689ENSBTAG00000046765POLR2A9976.428Bos_taurus
ENSCING00000007884-9868.859WBGene00000123ama-19667.089Caenorhabditis_elegans
ENSCING00000007884-9976.751ENSCAFG00000016532POLR2A9876.488Canis_familiaris
ENSCING00000007884-9975.945ENSCAFG00020007929-9975.699Canis_lupus_dingo
ENSCING00000007884-9976.689ENSCHIG00000027173-9976.428Capra_hircus
ENSCING00000007884-9977.996ENSTSYG00000012803-9975.152Carlito_syrichta
ENSCING00000007884-9577.893ENSCAPG00000001882-9973.483Cavia_aperea
ENSCING00000007884-9777.628ENSCPOG00000014812-9973.384Cavia_porcellus
ENSCING00000007884-9976.689ENSCCAG00000020938-9976.428Cebus_capucinus
ENSCING00000007884-9976.627ENSCATG00000013680-9976.367Cercocebus_atys
ENSCING00000007884-9976.577ENSCLAG00000012196-9976.306Chinchilla_lanigera
ENSCING00000007884-9969.174ENSCSAG00000011644-9969.063Chlorocebus_sabaeus
ENSCING00000007884-9974.396ENSCPBG00000012697POLR2A9774.180Chrysemys_picta_bellii
ENSCING00000007884-9694.390ENSCSAVG00000008334-9993.921Ciona_savignyi
ENSCING00000007884-9975.945ENSCANG00000010622-9975.699Colobus_angolensis_palliatus
ENSCING00000007884-9974.067ENSCGRG00001003538Polr2a9972.939Cricetulus_griseus_chok1gshd
ENSCING00000007884-8874.739ENSCGRG00000012105Polr2a8874.437Cricetulus_griseus_crigri
ENSCING00000007884-9977.104ENSCSEG00000002635polr2a9876.549Cynoglossus_semilaevis
ENSCING00000007884-9977.104ENSCVAG00000005156polr2a9876.549Cyprinodon_variegatus
ENSCING00000007884-9974.396ENSDNOG00000016482-9974.180Dasypus_novemcinctus
ENSCING00000007884-9976.689ENSDORG00000008667Polr2a9976.428Dipodomys_ordii
ENSCING00000007884-9966.228FBgn0003277RpII2159170.492Drosophila_melanogaster
ENSCING00000007884-9371.242ENSETEG00000002540-8872.374Echinops_telfairi
ENSCING00000007884-9975.666ENSEBUG00000013967polr2a9874.970Eptatretus_burgeri
ENSCING00000007884-9974.954ENSEASG00005019114-9974.727Equus_asinus_asinus
ENSCING00000007884-9976.689ENSECAG00000018485POLR2A9976.428Equus_caballus
ENSCING00000007884-8278.404ENSEEUG00000001154-9478.404Erinaceus_europaeus
ENSCING00000007884-9976.751ENSFDAG00000008287-9976.488Fukomys_damarensis
ENSCING00000007884-9875.332ENSGMOG00000007725polr2a9975.197Gadus_morhua
ENSCING00000007884-9975.791ENSGAFG00000005389polr2a9971.499Gambusia_affinis
ENSCING00000007884-9974.955ENSGACG00000019366polr2a9974.487Gasterosteus_aculeatus
ENSCING00000007884-9975.558ENSGGOG00000014800-9975.802Gorilla_gorilla
ENSCING00000007884-9977.166ENSHBUG00000018937polr2a9976.610Haplochromis_burtoni
ENSCING00000007884-9976.751ENSHGLG00000012381POLR2A9976.488Heterocephalus_glaber_female
ENSCING00000007884-9976.751ENSHGLG00100014843POLR2A9976.488Heterocephalus_glaber_male
ENSCING00000007884-9977.413ENSHCOG00000011874polr2a9876.853Hippocampus_comes
ENSCING00000007884-9977.551ENSIPUG00000002613Polr2a9876.988Ictalurus_punctatus
ENSCING00000007884-9976.689ENSSTOG00000001304-9976.428Ictidomys_tridecemlineatus
ENSCING00000007884-9976.689ENSJJAG00000013049Polr2a9976.428Jaculus_jaculus
ENSCING00000007884-8475.312ENSKMAG00000016343polr2a8475.145Kryptolebias_marmoratus
ENSCING00000007884-9977.228ENSLBEG00000027652polr2a9876.671Labrus_bergylta
ENSCING00000007884-9970.025ENSLACG00000012071POLR2A9969.712Latimeria_chalumnae
ENSCING00000007884-9877.848ENSLOCG00000013863polr2a9877.096Lepisosteus_oculatus
ENSCING00000007884-9976.689ENSLAFG00000008626-9976.428Loxodonta_africana
ENSCING00000007884-5376.725ENSMFAG00000007042-9976.725Macaca_fascicularis
ENSCING00000007884-9976.627ENSMMUG00000023620-9976.367Macaca_mulatta
ENSCING00000007884-9976.255ENSMNEG00000040407-9976.099Macaca_nemestrina
ENSCING00000007884-9972.756ENSMLEG00000030263-9976.725Mandrillus_leucophaeus
ENSCING00000007884-9977.351ENSMAMG00000003351polr2a9876.792Mastacembelus_armatus
ENSCING00000007884-9977.166ENSMZEG00005021429polr2a9876.610Maylandia_zebra
ENSCING00000007884-5478.208ENSMAUG00000021055-9978.208Mesocricetus_auratus
ENSCING00000007884-9976.751ENSMICG00000013372-9976.488Microcebus_murinus
ENSCING00000007884-9973.756ENSMOCG00000018279Polr2a9969.163Microtus_ochrogaster
ENSCING00000007884-9976.627ENSMODG00000007009-9976.367Monodelphis_domestica
ENSCING00000007884-9976.332ENSMALG00000008716polr2a9277.096Monopterus_albus
ENSCING00000007884-9976.689MGP_CAROLIEiJ_G0016587Polr2a9976.428Mus_caroli
ENSCING00000007884-9976.689ENSMUSG00000005198Polr2a9976.428Mus_musculus
ENSCING00000007884-9974.861MGP_PahariEiJ_G0017718Polr2a9974.637Mus_pahari
ENSCING00000007884-9976.689MGP_SPRETEiJ_G0017423Polr2a9976.428Mus_spretus
ENSCING00000007884-9976.813ENSMPUG00000009648-9976.549Mustela_putorius_furo
ENSCING00000007884-9976.223ENSMLUG00000009088-9975.971Myotis_lucifugus
ENSCING00000007884-9976.689ENSNGAG00000002543Polr2a9976.428Nannospalax_galili
ENSCING00000007884-9976.040ENSNBRG00000002005polr2a9875.503Neolamprologus_brichardi
ENSCING00000007884-9976.179ENSNLEG00000009460-9976.407Nomascus_leucogenys
ENSCING00000007884-9079.451ENSMEUG00000008611-9172.495Notamacropus_eugenii
ENSCING00000007884-8677.628ENSOPRG00000015116-9977.313Ochotona_princeps
ENSCING00000007884-9977.462ENSODEG00000017674-9974.149Octodon_degus
ENSCING00000007884-9977.228ENSONIG00000009231polr2a9876.671Oreochromis_niloticus
ENSCING00000007884-5178.004ENSOANG00000003303-9878.004Ornithorhynchus_anatinus
ENSCING00000007884-9976.246ENSOCUG00000017929-9975.820Oryctolagus_cuniculus
ENSCING00000007884-9977.228ENSORLG00000006431polr2a9876.671Oryzias_latipes
ENSCING00000007884-9977.228ENSORLG00020010235polr2a9876.671Oryzias_latipes_hni
ENSCING00000007884-9977.228ENSORLG00015007075polr2a9876.671Oryzias_latipes_hsok
ENSCING00000007884-9977.425ENSOMEG00000010713polr2a9977.848Oryzias_melastigma
ENSCING00000007884-9976.751ENSOGAG00000033608-9976.488Otolemur_garnettii
ENSCING00000007884-9076.689ENSOARG00000013874-9876.428Ovis_aries
ENSCING00000007884-9975.594ENSPPAG00000043734-9975.881Pan_paniscus
ENSCING00000007884-9976.179ENSPTRG00000008691POLR2A9976.407Pan_troglodytes
ENSCING00000007884-9975.945ENSPANG00000024099-9975.699Papio_anubis
ENSCING00000007884-9369.546ENSPKIG00000005727polr2a8470.775Paramormyrops_kingsleyae
ENSCING00000007884-9974.834ENSPSIG00000014006POLR2A9974.454Pelodiscus_sinensis
ENSCING00000007884-9977.040ENSPMGG00000019734polr2a9975.954Periophthalmus_magnuspinnatus
ENSCING00000007884-9976.689ENSPEMG00000012521Polr2a9976.428Peromyscus_maniculatus_bairdii
ENSCING00000007884-9676.594ENSPCIG00000028851-8177.421Phascolarctos_cinereus
ENSCING00000007884-8877.228ENSPFOG00000007890polr2a9676.671Poecilia_formosa
ENSCING00000007884-8877.228ENSPLAG00000007399polr2a9676.671Poecilia_latipinna
ENSCING00000007884-8877.228ENSPMEG00000002071polr2a9676.671Poecilia_mexicana
ENSCING00000007884-9977.166ENSPREG00000013122polr2a9876.610Poecilia_reticulata
ENSCING00000007884-9976.689ENSPPYG00000007924-9972.147Pongo_abelii
ENSCING00000007884-9178.723ENSPCAG00000006951-9178.723Procavia_capensis
ENSCING00000007884-9976.096ENSPCOG00000025260-9975.407Propithecus_coquereli
ENSCING00000007884-9976.565ENSPVAG00000005069-9976.306Pteropus_vampyrus
ENSCING00000007884-9977.228ENSPNYG00000022340polr2a9876.671Pundamilia_nyererei
ENSCING00000007884-9977.180ENSPNAG00000011237polr2a9876.624Pygocentrus_nattereri
ENSCING00000007884-9976.751ENSRNOG00000028834Polr2a9976.488Rattus_norvegicus
ENSCING00000007884-9975.373ENSRBIG00000002471-9875.091Rhinopithecus_bieti
ENSCING00000007884-9976.627ENSRROG00000029583-9976.367Rhinopithecus_roxellana
ENSCING00000007884-8850.277YDL140CRPO219971.250Saccharomyces_cerevisiae
ENSCING00000007884-9976.689ENSSBOG00000000808-9976.428Saimiri_boliviensis_boliviensis
ENSCING00000007884-9976.627ENSSHAG00000002858-9776.367Sarcophilus_harrisii
ENSCING00000007884-9977.537ENSSFOG00015023275polr2a9976.974Scleropages_formosus
ENSCING00000007884-9977.228ENSSMAG00000009137polr2a9876.671Scophthalmus_maximus
ENSCING00000007884-9977.413ENSSDUG00000020466polr2a9876.853Seriola_dumerili
ENSCING00000007884-9977.413ENSSLDG00000020613polr2a9876.853Seriola_lalandi_dorsalis
ENSCING00000007884-9973.194ENSSARG00000005875-9873.103Sorex_araneus
ENSCING00000007884-9977.475ENSSPAG00000016741polr2a9471.523Stegastes_partitus
ENSCING00000007884-9976.007ENSSSCG00000028278-9975.759Sus_scrofa
ENSCING00000007884-9970.828ENSTRUG00000012320polr2a8175.333Takifugu_rubripes
ENSCING00000007884-9876.176ENSTNIG00000010136polr2a9975.516Tetraodon_nigroviridis
ENSCING00000007884-7381.034ENSTBEG00000013294-5781.034Tupaia_belangeri
ENSCING00000007884-9975.325ENSTTRG00000014273-9975.091Tursiops_truncatus
ENSCING00000007884-9376.500ENSUAMG00000014866-9975.332Ursus_americanus
ENSCING00000007884-9176.220ENSUMAG00000015732-9876.220Ursus_maritimus
ENSCING00000007884-5778.378ENSVPAG00000008842-7378.378Vicugna_pacos
ENSCING00000007884-9976.751ENSVVUG00000027878-9876.488Vulpes_vulpes
ENSCING00000007884-9977.125ENSXETG00000012465polr2a9976.852Xenopus_tropicalis
ENSCING00000007884-9975.729ENSXCOG00000001804polr2a9975.274Xiphophorus_couchianus
ENSCING00000007884-9977.166ENSXMAG00000015687polr2a9876.610Xiphophorus_maculatus

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