EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008013 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 2862 bases
Position: chr1:6409087-6411948
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000016398	SHQ1	PF04925.15	1.5e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000016398	-	1691	-	ENSCINP00000016398	441 (aa)	-	F6VH72

Gene Model

Click here to download ENSCING00000008013's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008013's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008013	-	85	43.641	ENSG00000144736	SHQ1	96	50.000	Homo_sapiens
ENSCING00000008013	-	95	42.396	ENSAPOG00000000397	shq1	64	41.895	Acanthochromis_polyacanthus
ENSCING00000008013	-	85	42.356	ENSAMEG00000015140	SHQ1	69	43.284	Ailuropoda_melanoleuca
ENSCING00000008013	-	97	42.466	ENSACIG00000021249	shq1	64	44.330	Amphilophus_citrinellus
ENSCING00000008013	-	96	43.182	ENSAOCG00000023311	shq1	64	42.643	Amphiprion_ocellaris
ENSCING00000008013	-	96	43.182	ENSAPEG00000021686	shq1	64	42.643	Amphiprion_percula
ENSCING00000008013	-	96	43.182	ENSATEG00000008475	shq1	65	43.577	Anabas_testudineus
ENSCING00000008013	-	88	39.952	ENSAPLG00000013926	SHQ1	81	40.241	Anas_platyrhynchos
ENSCING00000008013	-	93	40.139	ENSACAG00000014809	SHQ1	59	41.791	Anolis_carolinensis
ENSCING00000008013	-	85	42.857	ENSANAG00000029241	SHQ1	69	42.857	Aotus_nancymaae
ENSCING00000008013	-	80	34.626	ENSANAG00000030500	-	68	34.190	Aotus_nancymaae
ENSCING00000008013	-	97	40.498	ENSACLG00000023077	shq1	66	40.094	Astatotilapia_calliptera
ENSCING00000008013	-	94	37.442	ENSAMXG00000043822	shq1	65	38.770	Astyanax_mexicanus
ENSCING00000008013	-	85	42.857	ENSBTAG00000005436	SHQ1	69	43.392	Bos_taurus
ENSCING00000008013	-	94	32.084	WBGene00021655	Y48A5A.1	90	32.997	Caenorhabditis_elegans
ENSCING00000008013	-	85	42.356	ENSCJAG00000015131	SHQ1	69	42.356	Callithrix_jacchus
ENSCING00000008013	-	86	41.500	ENSCAFG00000006434	SHQ1	73	41.725	Canis_familiaris
ENSCING00000008013	-	86	41.500	ENSCAFG00020016743	SHQ1	73	41.725	Canis_lupus_dingo
ENSCING00000008013	-	85	42.105	ENSCHIG00000012271	SHQ1	62	43.142	Capra_hircus
ENSCING00000008013	-	85	40.152	ENSTSYG00000014439	SHQ1	69	40.150	Carlito_syrichta
ENSCING00000008013	-	80	37.883	ENSCAPG00000009343	SHQ1	57	52.381	Cavia_aperea
ENSCING00000008013	-	90	42.217	ENSCPOG00000011443	SHQ1	71	42.417	Cavia_porcellus
ENSCING00000008013	-	85	38.677	ENSCCAG00000027080	SHQ1	66	38.677	Cebus_capucinus
ENSCING00000008013	-	96	34.404	ENSCCAG00000036087	-	69	35.806	Cebus_capucinus
ENSCING00000008013	-	85	44.110	ENSCATG00000041238	SHQ1	68	44.110	Cercocebus_atys
ENSCING00000008013	-	89	41.787	ENSCLAG00000004206	SHQ1	70	42.381	Chinchilla_lanigera
ENSCING00000008013	-	66	41.935	ENSCSAG00000011514	SHQ1	63	41.935	Chlorocebus_sabaeus
ENSCING00000008013	-	73	37.791	ENSCHOG00000003273	-	99	37.791	Choloepus_hoffmanni
ENSCING00000008013	-	96	39.150	ENSCPBG00000006441	SHQ1	65	41.542	Chrysemys_picta_bellii
ENSCING00000008013	-	97	65.967	ENSCSAVG00000002332	-	100	65.967	Ciona_savignyi
ENSCING00000008013	-	85	43.860	ENSCANG00000039295	SHQ1	69	43.860	Colobus_angolensis_palliatus
ENSCING00000008013	-	96	40.940	ENSCGRG00001012583	Shq1	68	50.000	Cricetulus_griseus_chok1gshd
ENSCING00000008013	-	96	40.940	ENSCGRG00000009849	Shq1	68	50.000	Cricetulus_griseus_crigri
ENSCING00000008013	-	98	42.152	ENSCSEG00000007829	shq1	72	42.094	Cynoglossus_semilaevis
ENSCING00000008013	-	95	43.448	ENSCVAG00000020049	shq1	67	44.810	Cyprinodon_variegatus
ENSCING00000008013	-	95	41.379	ENSDARG00000058522	shq1	66	42.494	Danio_rerio
ENSCING00000008013	-	85	41.895	ENSDNOG00000033937	SHQ1	69	42.893	Dasypus_novemcinctus
ENSCING00000008013	-	88	37.260	ENSETEG00000005766	SHQ1	72	37.260	Echinops_telfairi
ENSCING00000008013	-	75	37.644	ENSEBUG00000005445	shq1	74	38.906	Eptatretus_burgeri
ENSCING00000008013	-	90	41.093	ENSEASG00005002237	SHQ1	72	42.143	Equus_asinus_asinus
ENSCING00000008013	-	90	41.330	ENSECAG00000015673	SHQ1	70	42.381	Equus_caballus
ENSCING00000008013	-	96	40.268	ENSEEUG00000010568	SHQ1	72	40.898	Erinaceus_europaeus
ENSCING00000008013	-	85	42.455	ENSELUG00000003476	shq1	81	39.896	Esox_lucius
ENSCING00000008013	-	85	42.643	ENSFCAG00000012781	SHQ1	70	42.643	Felis_catus
ENSCING00000008013	-	89	41.289	ENSFALG00000013428	SHQ1	69	41.388	Ficedula_albicollis
ENSCING00000008013	-	90	42.243	ENSFDAG00000005595	SHQ1	64	42.243	Fukomys_damarensis
ENSCING00000008013	-	95	42.793	ENSFHEG00000017552	shq1	67	43.284	Fundulus_heteroclitus
ENSCING00000008013	-	85	42.105	ENSGMOG00000007350	shq1	100	42.105	Gadus_morhua
ENSCING00000008013	-	95	41.176	ENSGALG00000007798	SHQ1	65	42.000	Gallus_gallus
ENSCING00000008013	-	85	43.445	ENSGACG00000011797	shq1	100	43.367	Gasterosteus_aculeatus
ENSCING00000008013	-	85	43.609	ENSGGOG00000034818	SHQ1	68	43.609	Gorilla_gorilla
ENSCING00000008013	-	97	40.498	ENSHBUG00000010857	shq1	65	42.386	Haplochromis_burtoni
ENSCING00000008013	-	89	43.095	ENSHGLG00000003637	SHQ1	63	43.262	Heterocephalus_glaber_female
ENSCING00000008013	-	89	43.095	ENSHGLG00100011957	SHQ1	63	43.262	Heterocephalus_glaber_male
ENSCING00000008013	-	96	41.667	ENSHCOG00000010799	shq1	74	40.136	Hippocampus_comes
ENSCING00000008013	-	96	40.138	ENSIPUG00000001247	shq1	68	39.848	Ictalurus_punctatus
ENSCING00000008013	-	89	41.787	ENSSTOG00000010043	SHQ1	74	41.787	Ictidomys_tridecemlineatus
ENSCING00000008013	-	68	59.091	ENSJJAG00000017611	Shq1	62	59.091	Jaculus_jaculus
ENSCING00000008013	-	95	42.694	ENSKMAG00000004457	shq1	67	43.797	Kryptolebias_marmoratus
ENSCING00000008013	-	96	40.625	ENSLACG00000014243	SHQ1	60	42.500	Latimeria_chalumnae
ENSCING00000008013	-	95	41.723	ENSLOCG00000009970	shq1	69	42.537	Lepisosteus_oculatus
ENSCING00000008013	-	77	35.882	ENSMFAG00000037396	-	62	35.882	Macaca_fascicularis
ENSCING00000008013	-	85	44.110	ENSMFAG00000039148	SHQ1	68	44.110	Macaca_fascicularis
ENSCING00000008013	-	75	43.305	ENSMMUG00000009571	SHQ1	63	43.305	Macaca_mulatta
ENSCING00000008013	-	78	35.159	ENSMMUG00000021761	-	62	35.882	Macaca_mulatta
ENSCING00000008013	-	85	44.110	ENSMNEG00000032667	SHQ1	68	44.110	Macaca_nemestrina
ENSCING00000008013	-	85	43.609	ENSMLEG00000038493	SHQ1	68	43.609	Mandrillus_leucophaeus
ENSCING00000008013	-	97	42.664	ENSMAMG00000023432	shq1	61	43.182	Mastacembelus_armatus
ENSCING00000008013	-	97	40.498	ENSMZEG00005008649	shq1	65	42.278	Maylandia_zebra
ENSCING00000008013	-	95	40.858	ENSMGAG00000009640	SHQ1	66	41.832	Meleagris_gallopavo
ENSCING00000008013	-	95	41.270	ENSMAUG00000022030	Shq1	68	51.471	Mesocricetus_auratus
ENSCING00000008013	-	91	41.686	ENSMICG00000009224	SHQ1	71	42.280	Microcebus_murinus
ENSCING00000008013	-	95	41.950	ENSMOCG00000017836	Shq1	63	59.091	Microtus_ochrogaster
ENSCING00000008013	-	96	39.726	ENSMMOG00000010569	shq1	66	40.513	Mola_mola
ENSCING00000008013	-	100	43.011	ENSMODG00000003926	SHQ1	71	44.888	Monodelphis_domestica
ENSCING00000008013	-	96	42.404	ENSMALG00000008870	shq1	65	43.003	Monopterus_albus
ENSCING00000008013	-	95	41.230	MGP_CAROLIEiJ_G0028689	Shq1	62	59.091	Mus_caroli
ENSCING00000008013	-	95	41.002	ENSMUSG00000035378	Shq1	68	48.529	Mus_musculus
ENSCING00000008013	-	95	41.458	MGP_PahariEiJ_G0022440	Shq1	68	50.000	Mus_pahari
ENSCING00000008013	-	95	41.002	MGP_SPRETEiJ_G0029717	Shq1	68	48.529	Mus_spretus
ENSCING00000008013	-	91	40.515	ENSMPUG00000017006	SHQ1	72	41.784	Mustela_putorius_furo
ENSCING00000008013	-	84	38.832	ENSMLUG00000013539	SHQ1	67	40.449	Myotis_lucifugus
ENSCING00000008013	-	85	37.760	ENSNGAG00000023317	Shq1	69	38.760	Nannospalax_galili
ENSCING00000008013	-	77	39.660	ENSNBRG00000024004	shq1	59	41.830	Neolamprologus_brichardi
ENSCING00000008013	-	85	43.609	ENSNLEG00000002731	SHQ1	68	43.609	Nomascus_leucogenys
ENSCING00000008013	-	58	51.724	ENSOPRG00000013963	-	73	51.724	Ochotona_princeps
ENSCING00000008013	-	96	40.359	ENSODEG00000009192	SHQ1	63	57.627	Octodon_degus
ENSCING00000008013	-	97	40.950	ENSONIG00000020264	shq1	65	42.785	Oreochromis_niloticus
ENSCING00000008013	-	85	43.108	ENSOCUG00000016695	SHQ1	68	44.030	Oryctolagus_cuniculus
ENSCING00000008013	-	85	40.863	ENSORLG00000023538	shq1	71	40.863	Oryzias_latipes
ENSCING00000008013	-	94	40.698	ENSORLG00020003697	shq1	79	39.509	Oryzias_latipes_hni
ENSCING00000008013	-	85	39.750	ENSORLG00015021040	shq1	71	39.750	Oryzias_latipes_hsok
ENSCING00000008013	-	94	41.299	ENSOMEG00000001225	shq1	79	41.176	Oryzias_melastigma
ENSCING00000008013	-	85	43.035	ENSOGAG00000003898	SHQ1	70	42.998	Otolemur_garnettii
ENSCING00000008013	-	85	41.584	ENSOARG00000009547	SHQ1	69	41.626	Ovis_aries
ENSCING00000008013	-	85	43.609	ENSPPAG00000027714	SHQ1	68	43.609	Pan_paniscus
ENSCING00000008013	-	89	33.920	ENSPPAG00000043263	-	67	33.920	Pan_paniscus
ENSCING00000008013	-	85	42.643	ENSPPRG00000004769	SHQ1	69	42.643	Panthera_pardus
ENSCING00000008013	-	85	40.657	ENSPTIG00000011478	SHQ1	68	40.657	Panthera_tigris_altaica
ENSCING00000008013	-	85	43.609	ENSPTRG00000015106	SHQ1	68	43.609	Pan_troglodytes
ENSCING00000008013	-	89	34.694	ENSPTRG00000048303	-	67	34.694	Pan_troglodytes
ENSCING00000008013	-	85	43.829	ENSPANG00000002881	SHQ1	68	43.860	Papio_anubis
ENSCING00000008013	-	93	40.845	ENSPKIG00000021517	shq1	72	41.606	Paramormyrops_kingsleyae
ENSCING00000008013	-	96	39.150	ENSPSIG00000005536	SHQ1	65	41.439	Pelodiscus_sinensis
ENSCING00000008013	-	95	40.596	ENSPMGG00000008838	shq1	66	41.476	Periophthalmus_magnuspinnatus
ENSCING00000008013	-	85	42.145	ENSPEMG00000000251	Shq1	68	50.000	Peromyscus_maniculatus_bairdii
ENSCING00000008013	-	93	38.235	ENSPMAG00000005372	shq1	96	39.202	Petromyzon_marinus
ENSCING00000008013	-	95	42.334	ENSPFOG00000003118	shq1	72	42.821	Poecilia_formosa
ENSCING00000008013	-	75	41.040	ENSPMEG00000011076	shq1	67	41.503	Poecilia_mexicana
ENSCING00000008013	-	75	42.319	ENSPREG00000000591	shq1	66	41.525	Poecilia_reticulata
ENSCING00000008013	-	85	43.317	ENSPPYG00000013717	SHQ1	68	43.317	Pongo_abelii
ENSCING00000008013	-	88	42.243	ENSPCAG00000009035	SHQ1	72	42.243	Procavia_capensis
ENSCING00000008013	-	85	43.035	ENSPCOG00000008415	SHQ1	68	43.564	Propithecus_coquereli
ENSCING00000008013	-	85	41.353	ENSPVAG00000017392	SHQ1	69	41.422	Pteropus_vampyrus
ENSCING00000008013	-	95	41.014	ENSPNYG00000003878	shq1	65	42.278	Pundamilia_nyererei
ENSCING00000008013	-	94	40.509	ENSPNAG00000026840	shq1	64	40.759	Pygocentrus_nattereri
ENSCING00000008013	-	95	40.091	ENSRNOG00000005433	Shq1	66	41.895	Rattus_norvegicus
ENSCING00000008013	-	85	42.338	ENSRBIG00000026280	SHQ1	72	41.809	Rhinopithecus_bieti
ENSCING00000008013	-	85	43.860	ENSRROG00000034126	SHQ1	73	43.262	Rhinopithecus_roxellana
ENSCING00000008013	-	85	39.848	ENSSBOG00000021038	SHQ1	66	39.848	Saimiri_boliviensis_boliviensis
ENSCING00000008013	-	95	42.760	ENSSHAG00000015077	SHQ1	71	45.025	Sarcophilus_harrisii
ENSCING00000008013	-	95	40.835	ENSSFOG00015016241	shq1	71	42.347	Scleropages_formosus
ENSCING00000008013	-	85	42.132	ENSSMAG00000016151	shq1	65	42.386	Scophthalmus_maximus
ENSCING00000008013	-	94	41.435	ENSSDUG00000011986	shq1	64	42.092	Seriola_dumerili
ENSCING00000008013	-	85	42.746	ENSSLDG00000013908	shq1	64	42.487	Seriola_lalandi_dorsalis
ENSCING00000008013	-	71	40.774	ENSSARG00000007119	SHQ1	59	40.774	Sorex_araneus
ENSCING00000008013	-	76	37.222	ENSSPUG00000011526	-	58	39.048	Sphenodon_punctatus
ENSCING00000008013	-	85	41.604	ENSSSCG00000011518	SHQ1	73	41.920	Sus_scrofa
ENSCING00000008013	-	89	40.618	ENSTGUG00000009933	SHQ1	73	41.038	Taeniopygia_guttata
ENSCING00000008013	-	85	40.447	ENSTRUG00000009446	shq1	75	40.355	Takifugu_rubripes
ENSCING00000008013	-	90	39.568	ENSTNIG00000007354	shq1	91	39.474	Tetraodon_nigroviridis
ENSCING00000008013	-	95	41.002	ENSTTRG00000005320	SHQ1	69	42.680	Tursiops_truncatus
ENSCING00000008013	-	91	42.402	ENSUMAG00000024031	SHQ1	67	44.819	Ursus_maritimus
ENSCING00000008013	-	86	41.250	ENSVVUG00000013906	SHQ1	73	41.784	Vulpes_vulpes
ENSCING00000008013	-	96	44.647	ENSXETG00000032215	shq1	67	44.660	Xenopus_tropicalis