EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008141 (Gene tree)
Gene ID: 100184400
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerase III subunit RPC4
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3993 bases
Position: chrHT000141.1:97513-101505
Accession: 100184400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000016627	RNA_pol_Rpc4	PF05132.14	2.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000016627	-	1261	XM_002124752	ENSCINP00000016627	349 (aa)	XP_002124788	F6VGF9

Gene Model

Click here to download ENSCING00000008141's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008141's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008141	-	90	33.773	ENSG00000168495	POLR3D	90	34.921	Homo_sapiens
ENSCING00000008141	-	89	32.698	ENSAPOG00000012197	polr3d	90	31.707	Acanthochromis_polyacanthus
ENSCING00000008141	-	94	31.606	ENSAPOG00000017634	zgc:171971	86	32.065	Acanthochromis_polyacanthus
ENSCING00000008141	-	90	32.804	ENSAMEG00000003221	POLR3D	90	33.952	Ailuropoda_melanoleuca
ENSCING00000008141	-	89	32.507	ENSACIG00000017832	polr3d	90	32.877	Amphilophus_citrinellus
ENSCING00000008141	-	91	31.183	ENSACIG00000003707	zgc:171971	86	31.657	Amphilophus_citrinellus
ENSCING00000008141	-	94	30.570	ENSAOCG00000007733	zgc:171971	86	31.351	Amphiprion_ocellaris
ENSCING00000008141	-	89	32.153	ENSAOCG00000005037	polr3d	90	32.329	Amphiprion_ocellaris
ENSCING00000008141	-	94	31.088	ENSAPEG00000016107	zgc:171971	86	31.880	Amphiprion_percula
ENSCING00000008141	-	89	32.970	ENSAPEG00000013751	polr3d	90	32.329	Amphiprion_percula
ENSCING00000008141	-	93	33.602	ENSATEG00000023125	zgc:171971	86	33.051	Anabas_testudineus
ENSCING00000008141	-	62	47.674	ENSATEG00000023119	polr3d	90	31.267	Anabas_testudineus
ENSCING00000008141	-	78	32.840	ENSACAG00000010592	POLR3D	83	32.938	Anolis_carolinensis
ENSCING00000008141	-	90	33.773	ENSANAG00000030023	POLR3D	90	34.921	Aotus_nancymaae
ENSCING00000008141	-	89	31.989	ENSACLG00000010147	polr3d	90	33.423	Astatotilapia_calliptera
ENSCING00000008141	-	93	32.337	ENSACLG00000000074	zgc:171971	87	34.174	Astatotilapia_calliptera
ENSCING00000008141	-	89	32.733	ENSAMXG00000019418	zgc:171971	87	35.542	Astyanax_mexicanus
ENSCING00000008141	-	89	34.933	ENSBTAG00000010036	POLR3D	90	34.492	Bos_taurus
ENSCING00000008141	-	90	33.773	ENSCJAG00000020278	POLR3D	84	34.921	Callithrix_jacchus
ENSCING00000008141	-	90	33.684	ENSCAFG00000009455	POLR3D	90	33.952	Canis_familiaris
ENSCING00000008141	-	90	33.684	ENSCAFG00020013027	POLR3D	90	33.952	Canis_lupus_dingo
ENSCING00000008141	-	90	33.947	ENSCHIG00000012279	POLR3D	90	34.483	Capra_hircus
ENSCING00000008141	-	90	32.895	ENSTSYG00000009055	POLR3D	90	34.483	Carlito_syrichta
ENSCING00000008141	-	86	32.877	ENSCAPG00000010394	POLR3D	98	32.877	Cavia_aperea
ENSCING00000008141	-	90	34.921	ENSCPOG00000003679	POLR3D	90	34.921	Cavia_porcellus
ENSCING00000008141	-	90	33.773	ENSCCAG00000019817	POLR3D	90	34.921	Cebus_capucinus
ENSCING00000008141	-	90	33.862	ENSCATG00000025950	POLR3D	90	35.013	Cercocebus_atys
ENSCING00000008141	-	90	33.862	ENSCLAG00000014993	POLR3D	90	35.185	Chinchilla_lanigera
ENSCING00000008141	-	90	33.862	ENSCSAG00000016525	POLR3D	90	35.013	Chlorocebus_sabaeus
ENSCING00000008141	-	71	46.512	ENSCHOG00000000228	POLR3D	58	46.512	Choloepus_hoffmanni
ENSCING00000008141	-	89	35.864	ENSCPBG00000001313	POLR3D	90	34.646	Chrysemys_picta_bellii
ENSCING00000008141	-	98	68.605	ENSCSAVG00000007119	-	97	68.696	Ciona_savignyi
ENSCING00000008141	-	90	33.862	ENSCANG00000043589	POLR3D	90	35.013	Colobus_angolensis_palliatus
ENSCING00000008141	-	90	33.069	ENSCGRG00001010339	Polr3d	90	34.218	Cricetulus_griseus_chok1gshd
ENSCING00000008141	-	90	33.069	ENSCGRG00000003956	Polr3d	90	34.218	Cricetulus_griseus_crigri
ENSCING00000008141	-	95	32.102	ENSCSEG00000015509	zgc:171971	85	32.036	Cynoglossus_semilaevis
ENSCING00000008141	-	90	31.880	ENSCSEG00000008123	polr3d	90	32.000	Cynoglossus_semilaevis
ENSCING00000008141	-	88	33.832	ENSCVAG00000009078	-	89	32.653	Cyprinodon_variegatus
ENSCING00000008141	-	89	32.514	ENSCVAG00000020687	polr3d	90	31.622	Cyprinodon_variegatus
ENSCING00000008141	-	89	33.708	ENSDARG00000042054	zgc:171971	86	33.708	Danio_rerio
ENSCING00000008141	-	91	32.258	ENSDARG00000104516	polr3d	91	33.516	Danio_rerio
ENSCING00000008141	-	90	31.481	ENSDNOG00000013488	POLR3D	90	33.687	Dasypus_novemcinctus
ENSCING00000008141	-	90	32.808	ENSDORG00000011174	Polr3d	90	34.127	Dipodomys_ordii
ENSCING00000008141	-	90	31.481	ENSETEG00000016516	POLR3D	90	33.333	Echinops_telfairi
ENSCING00000008141	-	90	33.158	ENSEASG00005018824	POLR3D	90	33.687	Equus_asinus_asinus
ENSCING00000008141	-	90	33.684	ENSECAG00000025090	-	90	34.218	Equus_caballus
ENSCING00000008141	-	90	33.684	ENSEEUG00000007632	POLR3D	90	34.218	Erinaceus_europaeus
ENSCING00000008141	-	89	31.367	ENSELUG00000016978	polr3d	91	31.565	Esox_lucius
ENSCING00000008141	-	95	33.594	ENSELUG00000017642	zgc:171971	86	32.869	Esox_lucius
ENSCING00000008141	-	90	32.804	ENSFCAG00000005346	POLR3D	90	33.952	Felis_catus
ENSCING00000008141	-	84	31.250	ENSFALG00000010907	POLR3D	99	33.239	Ficedula_albicollis
ENSCING00000008141	-	90	32.454	ENSFDAG00000010144	POLR3D	90	34.218	Fukomys_damarensis
ENSCING00000008141	-	89	31.536	ENSFHEG00000000508	polr3d	90	32.337	Fundulus_heteroclitus
ENSCING00000008141	-	88	32.676	ENSFHEG00000003803	-	87	32.295	Fundulus_heteroclitus
ENSCING00000008141	-	94	32.934	ENSGMOG00000015819	zgc:171971	85	31.661	Gadus_morhua
ENSCING00000008141	-	90	31.267	ENSGMOG00000006293	polr3d	96	31.452	Gadus_morhua
ENSCING00000008141	-	75	32.288	ENSGALG00000032501	-	59	32.237	Gallus_gallus
ENSCING00000008141	-	90	32.533	ENSGAFG00000010268	polr3d	91	33.512	Gambusia_affinis
ENSCING00000008141	-	89	32.584	ENSGAFG00000009259	zgc:171971	88	30.423	Gambusia_affinis
ENSCING00000008141	-	61	48.837	ENSGACG00000011126	polr3d	90	32.075	Gasterosteus_aculeatus
ENSCING00000008141	-	94	33.842	ENSGACG00000015436	zgc:171971	88	32.440	Gasterosteus_aculeatus
ENSCING00000008141	-	89	35.602	ENSGAGG00000023229	POLR3D	90	34.383	Gopherus_agassizii
ENSCING00000008141	-	90	33.773	ENSGGOG00000007302	POLR3D	90	34.921	Gorilla_gorilla
ENSCING00000008141	-	89	31.989	ENSHBUG00000012288	polr3d	90	33.423	Haplochromis_burtoni
ENSCING00000008141	-	89	32.682	ENSHBUG00000020493	zgc:171971	96	32.749	Haplochromis_burtoni
ENSCING00000008141	-	90	33.067	ENSHGLG00000015415	POLR3D	90	34.133	Heterocephalus_glaber_female
ENSCING00000008141	-	90	33.067	ENSHGLG00100014950	POLR3D	90	34.133	Heterocephalus_glaber_male
ENSCING00000008141	-	89	31.593	ENSHCOG00000002228	polr3d	90	32.075	Hippocampus_comes
ENSCING00000008141	-	89	33.148	ENSIPUG00000008608	zgc:171971	88	33.799	Ictalurus_punctatus
ENSCING00000008141	-	91	30.130	ENSIPUG00000003480	polr3d	92	30.343	Ictalurus_punctatus
ENSCING00000008141	-	90	32.199	ENSSTOG00000016519	POLR3D	90	33.952	Ictidomys_tridecemlineatus
ENSCING00000008141	-	90	31.937	ENSJJAG00000006743	Polr3d	90	33.596	Jaculus_jaculus
ENSCING00000008141	-	61	51.163	ENSKMAG00000005145	polr3d	90	32.514	Kryptolebias_marmoratus
ENSCING00000008141	-	94	31.593	ENSLBEG00000009545	zgc:171971	90	30.649	Labrus_bergylta
ENSCING00000008141	-	89	33.770	ENSLACG00000016654	POLR3D	90	34.896	Latimeria_chalumnae
ENSCING00000008141	-	89	33.333	ENSLOCG00000006467	zgc:171971	88	33.611	Lepisosteus_oculatus
ENSCING00000008141	-	59	48.193	ENSLOCG00000016080	polr3d	91	33.509	Lepisosteus_oculatus
ENSCING00000008141	-	89	33.067	ENSLAFG00000001562	POLR3D	90	33.777	Loxodonta_africana
ENSCING00000008141	-	90	33.862	ENSMFAG00000029141	POLR3D	90	35.013	Macaca_fascicularis
ENSCING00000008141	-	90	33.862	ENSMMUG00000023226	POLR3D	90	35.013	Macaca_mulatta
ENSCING00000008141	-	90	33.862	ENSMNEG00000039410	POLR3D	90	35.013	Macaca_nemestrina
ENSCING00000008141	-	90	33.862	ENSMLEG00000031413	POLR3D	90	35.013	Mandrillus_leucophaeus
ENSCING00000008141	-	89	31.063	ENSMAMG00000008914	polr3d	90	31.635	Mastacembelus_armatus
ENSCING00000008141	-	89	31.593	ENSMAMG00000020617	zgc:171971	87	32.320	Mastacembelus_armatus
ENSCING00000008141	-	93	32.337	ENSMZEG00005003175	zgc:171971	87	34.174	Maylandia_zebra
ENSCING00000008141	-	89	31.989	ENSMZEG00005011442	polr3d	90	33.423	Maylandia_zebra
ENSCING00000008141	-	90	33.069	ENSMAUG00000006844	Polr3d	90	34.218	Mesocricetus_auratus
ENSCING00000008141	-	82	39.568	ENSMICG00000001049	POLR3D	71	40.373	Microcebus_murinus
ENSCING00000008141	-	90	32.804	ENSMOCG00000005195	Polr3d	90	33.952	Microtus_ochrogaster
ENSCING00000008141	-	89	32.967	ENSMMOG00000013845	polr3d	90	33.425	Mola_mola
ENSCING00000008141	-	87	33.423	ENSMODG00000009491	POLR3D	91	34.239	Monodelphis_domestica
ENSCING00000008141	-	94	33.245	ENSMALG00000005659	zgc:171971	87	33.514	Monopterus_albus
ENSCING00000008141	-	89	34.511	ENSMALG00000002928	polr3d	90	32.105	Monopterus_albus
ENSCING00000008141	-	90	33.333	MGP_CAROLIEiJ_G0019481	Polr3d	90	34.483	Mus_caroli
ENSCING00000008141	-	90	33.333	ENSMUSG00000000776	Polr3d	90	34.483	Mus_musculus
ENSCING00000008141	-	90	30.952	MGP_PahariEiJ_G0030498	Polr3d	90	31.830	Mus_pahari
ENSCING00000008141	-	90	33.333	MGP_SPRETEiJ_G0020373	Polr3d	90	34.483	Mus_spretus
ENSCING00000008141	-	90	33.069	ENSMPUG00000003653	POLR3D	90	34.218	Mustela_putorius_furo
ENSCING00000008141	-	90	33.684	ENSMLUG00000002109	POLR3D	90	34.218	Myotis_lucifugus
ENSCING00000008141	-	90	33.069	ENSNGAG00000013872	Polr3d	90	34.483	Nannospalax_galili
ENSCING00000008141	-	89	32.172	ENSNBRG00000019106	polr3d	90	32.533	Neolamprologus_brichardi
ENSCING00000008141	-	90	34.127	ENSMEUG00000000465	POLR3D	90	35.279	Notamacropus_eugenii
ENSCING00000008141	-	89	32.891	ENSOPRG00000013146	POLR3D	90	34.574	Ochotona_princeps
ENSCING00000008141	-	90	33.684	ENSODEG00000005884	POLR3D	91	34.737	Octodon_degus
ENSCING00000008141	-	89	31.989	ENSONIG00000010634	polr3d	90	32.075	Oreochromis_niloticus
ENSCING00000008141	-	89	31.638	ENSONIG00000007280	zgc:171971	87	33.146	Oreochromis_niloticus
ENSCING00000008141	-	90	33.598	ENSOCUG00000017410	POLR3D	90	33.862	Oryctolagus_cuniculus
ENSCING00000008141	-	89	31.892	ENSORLG00000011583	polr3d	92	31.622	Oryzias_latipes
ENSCING00000008141	-	89	32.337	ENSORLG00020005668	polr3d	90	30.667	Oryzias_latipes_hni
ENSCING00000008141	-	89	32.970	ENSORLG00015020291	polr3d	89	31.267	Oryzias_latipes_hsok
ENSCING00000008141	-	89	32.065	ENSOMEG00000010120	polr3d	90	32.514	Oryzias_melastigma
ENSCING00000008141	-	90	33.952	ENSOGAG00000004912	POLR3D	90	35.106	Otolemur_garnettii
ENSCING00000008141	-	90	33.947	ENSOARG00000010372	-	72	34.483	Ovis_aries
ENSCING00000008141	-	90	33.773	ENSPPAG00000029591	POLR3D	90	34.921	Pan_paniscus
ENSCING00000008141	-	90	32.804	ENSPPRG00000022827	POLR3D	90	33.952	Panthera_pardus
ENSCING00000008141	-	90	32.804	ENSPTIG00000018239	POLR3D	90	33.952	Panthera_tigris_altaica
ENSCING00000008141	-	90	33.773	ENSPTRG00000020056	POLR3D	90	34.921	Pan_troglodytes
ENSCING00000008141	-	90	33.862	ENSPANG00000009440	POLR3D	90	35.013	Papio_anubis
ENSCING00000008141	-	89	32.591	ENSPKIG00000025283	zgc:171971	86	33.148	Paramormyrops_kingsleyae
ENSCING00000008141	-	88	40.625	ENSPKIG00000006727	polr3d	75	40.252	Paramormyrops_kingsleyae
ENSCING00000008141	-	90	34.204	ENSPSIG00000006113	POLR3D	91	32.642	Pelodiscus_sinensis
ENSCING00000008141	-	89	34.648	ENSPMGG00000021658	polr3d	90	34.358	Periophthalmus_magnuspinnatus
ENSCING00000008141	-	90	33.333	ENSPEMG00000023314	Polr3d	90	34.483	Peromyscus_maniculatus_bairdii
ENSCING00000008141	-	90	34.474	ENSPCIG00000012699	POLR3D	90	35.279	Phascolarctos_cinereus
ENSCING00000008141	-	90	32.800	ENSPFOG00000012698	polr3d	90	33.333	Poecilia_formosa
ENSCING00000008141	-	90	32.800	ENSPLAG00000008149	polr3d	90	33.602	Poecilia_latipinna
ENSCING00000008141	-	90	32.979	ENSPMEG00000002702	polr3d	90	33.512	Poecilia_mexicana
ENSCING00000008141	-	89	31.180	ENSPREG00000003755	-	88	30.337	Poecilia_reticulata
ENSCING00000008141	-	90	33.333	ENSPREG00000007593	polr3d	90	35.753	Poecilia_reticulata
ENSCING00000008141	-	90	33.773	ENSPPYG00000018419	POLR3D	90	34.921	Pongo_abelii
ENSCING00000008141	-	81	39.706	ENSPCOG00000028134	POLR3D	70	40.373	Propithecus_coquereli
ENSCING00000008141	-	90	33.684	ENSPVAG00000009873	POLR3D	90	33.952	Pteropus_vampyrus
ENSCING00000008141	-	77	31.661	ENSPNYG00000008902	zgc:171971	80	32.188	Pundamilia_nyererei
ENSCING00000008141	-	89	31.989	ENSPNYG00000016306	polr3d	90	33.423	Pundamilia_nyererei
ENSCING00000008141	-	60	46.512	ENSPNAG00000022324	polr3d	70	36.478	Pygocentrus_nattereri
ENSCING00000008141	-	94	32.632	ENSPNAG00000018934	zgc:171971	88	33.149	Pygocentrus_nattereri
ENSCING00000008141	-	90	33.333	ENSRNOG00000010028	Polr3d	90	34.483	Rattus_norvegicus
ENSCING00000008141	-	90	33.862	ENSRBIG00000035406	POLR3D	90	35.013	Rhinopithecus_bieti
ENSCING00000008141	-	90	33.862	ENSRROG00000037278	POLR3D	90	35.013	Rhinopithecus_roxellana
ENSCING00000008141	-	90	33.773	ENSSBOG00000024956	POLR3D	90	34.921	Saimiri_boliviensis_boliviensis
ENSCING00000008141	-	84	31.844	ENSSHAG00000018257	POLR3D	99	32.584	Sarcophilus_harrisii
ENSCING00000008141	-	69	32.292	ENSSFOG00015011547	zgc:171971	90	33.626	Scleropages_formosus
ENSCING00000008141	-	89	34.530	ENSSMAG00000001465	zgc:171971	86	33.056	Scophthalmus_maximus
ENSCING00000008141	-	59	46.988	ENSSMAG00000006271	polr3d	90	30.831	Scophthalmus_maximus
ENSCING00000008141	-	89	31.989	ENSSDUG00000020718	polr3d	90	31.536	Seriola_dumerili
ENSCING00000008141	-	91	30.667	ENSSDUG00000016019	zgc:171971	87	31.250	Seriola_dumerili
ENSCING00000008141	-	89	31.989	ENSSLDG00000009643	polr3d	90	31.536	Seriola_lalandi_dorsalis
ENSCING00000008141	-	91	30.933	ENSSLDG00000015968	zgc:171971	87	31.522	Seriola_lalandi_dorsalis
ENSCING00000008141	-	90	30.570	ENSSARG00000012844	POLR3D	90	30.909	Sorex_araneus
ENSCING00000008141	-	90	35.171	ENSSPUG00000000719	POLR3D	91	35.450	Sphenodon_punctatus
ENSCING00000008141	-	89	34.239	ENSSPAG00000023326	polr3d	90	32.884	Stegastes_partitus
ENSCING00000008141	-	93	32.584	ENSSPAG00000010384	zgc:171971	86	33.431	Stegastes_partitus
ENSCING00000008141	-	90	33.069	ENSSSCG00000009622	POLR3D	90	34.656	Sus_scrofa
ENSCING00000008141	-	89	31.421	ENSTRUG00000003555	polr3d	90	31.016	Takifugu_rubripes
ENSCING00000008141	-	89	33.060	ENSTNIG00000006282	polr3d	90	33.609	Tetraodon_nigroviridis
ENSCING00000008141	-	90	32.275	ENSTTRG00000012745	POLR3D	90	33.952	Tursiops_truncatus
ENSCING00000008141	-	78	31.343	ENSUAMG00000026868	POLR3D	88	32.635	Ursus_americanus
ENSCING00000008141	-	90	32.804	ENSUMAG00000005099	POLR3D	90	33.952	Ursus_maritimus
ENSCING00000008141	-	90	33.684	ENSVVUG00000005290	POLR3D	90	33.952	Vulpes_vulpes
ENSCING00000008141	-	83	39.007	ENSXETG00000010534	polr3d	72	39.007	Xenopus_tropicalis
ENSCING00000008141	-	90	33.803	ENSXCOG00000015872	polr3d	90	35.674	Xiphophorus_couchianus
ENSCING00000008141	-	90	32.172	ENSXMAG00000001872	polr3d	91	33.245	Xiphophorus_maculatus
ENSCING00000008141	-	89	32.584	ENSXMAG00000014555	-	88	30.704	Xiphophorus_maculatus