EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008396 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3567 bases
Position: chr9:4421310-4424876
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000017124	Smg4_UPF3	PF03467.15	2.7e-51	1	1
ENSCINP00000024004	Smg4_UPF3	PF03467.15	4.5e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000024250	-	1127	-	ENSCINP00000024004	160 (aa)	-	F6VUW6
ENSCINT00000017124	-	1535	-	ENSCINP00000017124	197 (aa)	-	F6XS77

Gene Model

Click here to download ENSCING00000008396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008396's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008396	-	91	51.370	ENSG00000125351	UPF3B	76	47.879	Homo_sapiens
ENSCING00000008396	-	91	52.381	ENSACIG00000020468	upf3a	71	52.830	Amphilophus_citrinellus
ENSCING00000008396	-	93	44.966	ENSANAG00000025598	-	54	40.000	Aotus_nancymaae
ENSCING00000008396	-	91	51.370	ENSANAG00000021894	-	77	47.879	Aotus_nancymaae
ENSCING00000008396	-	83	51.515	ENSANAG00000033169	-	63	46.341	Aotus_nancymaae
ENSCING00000008396	-	98	45.223	ENSAMXG00000000199	upf3b	63	41.398	Astyanax_mexicanus
ENSCING00000008396	-	91	51.370	ENSBTAG00000035615	UPF3B	59	46.667	Bos_taurus
ENSCING00000008396	-	93	54.054	ENSBTAG00000047365	-	67	54.054	Bos_taurus
ENSCING00000008396	-	91	32.275	WBGene00004882	smg-4	55	32.796	Caenorhabditis_elegans
ENSCING00000008396	-	91	50.685	ENSCJAG00000004975	UPF3B	77	47.273	Callithrix_jacchus
ENSCING00000008396	-	91	51.370	ENSCHIG00000018011	-	59	46.667	Capra_hircus
ENSCING00000008396	-	91	51.370	ENSTSYG00000014690	UPF3B	77	45.029	Carlito_syrichta
ENSCING00000008396	-	91	42.466	ENSCCAG00000029813	-	59	39.106	Cebus_capucinus
ENSCING00000008396	-	91	51.370	ENSCATG00000017506	UPF3B	77	47.879	Cercocebus_atys
ENSCING00000008396	-	54	54.651	ENSCLAG00000000093	-	60	54.651	Chinchilla_lanigera
ENSCING00000008396	-	54	58.140	ENSCPBG00000022854	-	82	55.140	Chrysemys_picta_bellii
ENSCING00000008396	-	91	51.370	ENSCANG00000029220	UPF3B	57	46.667	Colobus_angolensis_palliatus
ENSCING00000008396	-	74	54.167	ENSFHEG00000010418	upf3a	69	55.963	Fundulus_heteroclitus
ENSCING00000008396	-	86	51.095	ENSGMOG00000019615	upf3a	52	46.429	Gadus_morhua
ENSCING00000008396	-	97	53.846	ENSGALG00000016815	-	75	53.509	Gallus_gallus
ENSCING00000008396	-	91	48.966	ENSGACG00000017435	upf3b	66	45.556	Gasterosteus_aculeatus
ENSCING00000008396	-	86	52.555	ENSGACG00000001972	upf3a	53	47.619	Gasterosteus_aculeatus
ENSCING00000008396	-	91	54.483	ENSGAGG00000001952	UPF3A	82	54.483	Gopherus_agassizii
ENSCING00000008396	-	91	51.370	ENSGGOG00000023995	UPF3B	58	52.632	Gorilla_gorilla
ENSCING00000008396	-	91	53.741	ENSHCOG00000013985	upf3a	67	50.943	Hippocampus_comes
ENSCING00000008396	-	98	53.846	ENSSTOG00000030282	-	66	53.846	Ictidomys_tridecemlineatus
ENSCING00000008396	-	98	53.205	ENSJJAG00000018099	-	73	53.205	Jaculus_jaculus
ENSCING00000008396	-	92	41.026	ENSMFAG00000045275	-	90	37.895	Macaca_fascicularis
ENSCING00000008396	-	91	51.370	ENSMFAG00000045414	UPF3B	77	47.879	Macaca_fascicularis
ENSCING00000008396	-	88	42.667	ENSMMUG00000046682	-	88	39.560	Macaca_mulatta
ENSCING00000008396	-	91	51.370	ENSMMUG00000020222	UPF3B	77	47.879	Macaca_mulatta
ENSCING00000008396	-	91	40.645	ENSMNEG00000040898	-	89	38.298	Macaca_nemestrina
ENSCING00000008396	-	91	51.370	ENSMNEG00000039794	UPF3B	77	47.879	Macaca_nemestrina
ENSCING00000008396	-	91	51.370	ENSMLEG00000010999	UPF3B	77	47.879	Mandrillus_leucophaeus
ENSCING00000008396	-	91	51.370	ENSMICG00000001743	UPF3B	56	46.667	Microcebus_murinus
ENSCING00000008396	-	93	54.730	ENSMOCG00000000550	Upf3a	50	49.721	Microtus_ochrogaster
ENSCING00000008396	-	54	55.814	ENSMALG00000002454	-	59	53.774	Monopterus_albus
ENSCING00000008396	-	96	47.403	ENSNBRG00000011560	upf3b	76	49.550	Neolamprologus_brichardi
ENSCING00000008396	-	91	51.370	ENSNLEG00000014897	UPF3B	60	53.571	Nomascus_leucogenys
ENSCING00000008396	-	92	40.816	ENSNLEG00000027516	-	85	36.813	Nomascus_leucogenys
ENSCING00000008396	-	93	39.597	ENSODEG00000006064	-	85	36.310	Octodon_degus
ENSCING00000008396	-	71	41.228	ENSODEG00000000596	-	67	36.842	Octodon_degus
ENSCING00000008396	-	96	54.248	ENSODEG00000009176	-	61	54.248	Octodon_degus
ENSCING00000008396	-	91	44.516	ENSODEG00000007164	-	79	40.314	Octodon_degus
ENSCING00000008396	-	94	47.020	ENSORLG00020003758	upf3b	66	43.500	Oryzias_latipes_hni
ENSCING00000008396	-	91	51.370	ENSPPAG00000040390	UPF3B	58	52.632	Pan_paniscus
ENSCING00000008396	-	91	51.724	ENSPTIG00000015264	UPF3B	57	46.667	Panthera_tigris_altaica
ENSCING00000008396	-	91	51.370	ENSPTRG00000022228	UPF3B	58	52.632	Pan_troglodytes
ENSCING00000008396	-	91	51.370	ENSPANG00000000900	UPF3B	77	47.879	Papio_anubis
ENSCING00000008396	-	92	41.026	ENSPANG00000029350	-	91	37.895	Papio_anubis
ENSCING00000008396	-	100	44.878	ENSPKIG00000019226	upf3b	75	51.282	Paramormyrops_kingsleyae
ENSCING00000008396	-	94	47.333	ENSPMGG00000016067	upf3b	66	45.304	Periophthalmus_magnuspinnatus
ENSCING00000008396	-	91	56.849	ENSPCIG00000019590	-	65	54.730	Phascolarctos_cinereus
ENSCING00000008396	-	91	52.740	ENSPLAG00000011960	upf3a	65	53.571	Poecilia_latipinna
ENSCING00000008396	-	71	54.783	ENSPREG00000005566	upf3a	67	54.783	Poecilia_reticulata
ENSCING00000008396	-	55	52.273	ENSPREG00000012214	upf3b	77	48.246	Poecilia_reticulata
ENSCING00000008396	-	91	51.370	ENSPPYG00000020675	-	54	46.667	Pongo_abelii
ENSCING00000008396	-	91	51.370	ENSPCOG00000021960	UPF3B	56	46.667	Propithecus_coquereli
ENSCING00000008396	-	100	43.415	ENSPNAG00000021528	upf3b	61	43.169	Pygocentrus_nattereri
ENSCING00000008396	-	91	51.370	ENSRROG00000041031	UPF3B	77	47.879	Rhinopithecus_roxellana
ENSCING00000008396	-	91	52.055	ENSSBOG00000019740	UPF3B	79	48.795	Saimiri_boliviensis_boliviensis
ENSCING00000008396	-	99	44.335	ENSSMAG00000012913	upf3b	59	45.856	Scophthalmus_maximus
ENSCING00000008396	-	88	50.714	ENSSMAG00000003858	upf3a	72	51.852	Scophthalmus_maximus
ENSCING00000008396	-	91	52.381	ENSSDUG00000009680	upf3a	69	53.571	Seriola_dumerili
ENSCING00000008396	-	91	52.381	ENSSPAG00000007938	upf3a	74	46.914	Stegastes_partitus
ENSCING00000008396	-	98	48.718	ENSVVUG00000011594	UPF3B	77	47.879	Vulpes_vulpes
ENSCING00000008396	-	90	52.778	ENSXETG00000007440	upf3b	78	48.333	Xenopus_tropicalis
ENSCING00000008396	-	88	47.857	ENSXCOG00000016586	upf3b	78	46.795	Xiphophorus_couchianus