EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008436 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1485 bases
Position: chr11:3647491-3648975
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000017200	RRM_1	PF00076.22	2.9e-44	1	3
ENSCINP00000017200	RRM_1	PF00076.22	2.9e-44	2	3
ENSCINP00000017200	RRM_1	PF00076.22	2.9e-44	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000017200	-	1485	-	ENSCINP00000017200	494 (aa)	-	F6UF46

Gene Model

Click here to download ENSCING00000008436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008436's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008436	-	100	49.156	ENSG00000179950	PUF60	100	48.803	Homo_sapiens
ENSCING00000008436	-	99	48.694	ENSAPOG00000001713	puf60b	99	48.694	Acanthochromis_polyacanthus
ENSCING00000008436	-	98	49.427	ENSAMEG00000006406	PUF60	93	48.593	Ailuropoda_melanoleuca
ENSCING00000008436	-	95	44.487	ENSACIG00000003263	-	98	45.187	Amphilophus_citrinellus
ENSCING00000008436	-	95	48.356	ENSACIG00000021705	puf60b	98	49.315	Amphilophus_citrinellus
ENSCING00000008436	-	99	49.341	ENSAOCG00000005395	puf60b	99	49.341	Amphiprion_ocellaris
ENSCING00000008436	-	97	47.909	ENSAOCG00000015558	-	97	48.757	Amphiprion_ocellaris
ENSCING00000008436	-	95	45.382	ENSAPEG00000001836	-	99	45.703	Amphiprion_percula
ENSCING00000008436	-	95	48.134	ENSAPEG00000011923	puf60b	95	48.134	Amphiprion_percula
ENSCING00000008436	-	98	47.917	ENSATEG00000001730	puf60b	98	47.917	Anabas_testudineus
ENSCING00000008436	-	95	47.860	ENSATEG00000006303	-	96	48.155	Anabas_testudineus
ENSCING00000008436	-	98	47.866	ENSAPLG00000010150	PUF60	99	48.423	Anas_platyrhynchos
ENSCING00000008436	-	98	48.519	ENSACAG00000001645	PUF60	97	49.343	Anolis_carolinensis
ENSCING00000008436	-	100	48.790	ENSANAG00000018626	PUF60	100	48.803	Aotus_nancymaae
ENSCING00000008436	-	99	45.841	ENSACLG00000004462	puf60b	98	50.000	Astatotilapia_calliptera
ENSCING00000008436	-	98	49.907	ENSAMXG00000036570	puf60a	98	51.527	Astyanax_mexicanus
ENSCING00000008436	-	51	59.449	ENSAMXG00000041030	puf60b	98	47.741	Astyanax_mexicanus
ENSCING00000008436	-	99	48.059	ENSBTAG00000037493	PUF60	100	47.993	Bos_taurus
ENSCING00000008436	-	76	44.141	WBGene00004389	rnp-6	69	45.312	Caenorhabditis_elegans
ENSCING00000008436	-	99	48.244	ENSCJAG00000021485	PUF60	100	48.175	Callithrix_jacchus
ENSCING00000008436	-	98	48.956	ENSCAFG00000001400	PUF60	93	48.876	Canis_familiaris
ENSCING00000008436	-	100	47.970	ENSCAFG00020018754	PUF60	100	47.993	Canis_lupus_dingo
ENSCING00000008436	-	98	48.308	ENSCHIG00000001618	PUF60	87	48.327	Capra_hircus
ENSCING00000008436	-	100	48.155	ENSTSYG00000011912	PUF60	99	49.251	Carlito_syrichta
ENSCING00000008436	-	98	43.585	ENSCPOG00000014613	PUF60	94	43.068	Cavia_porcellus
ENSCING00000008436	-	100	48.155	ENSCCAG00000007744	PUF60	100	48.094	Cebus_capucinus
ENSCING00000008436	-	99	48.603	ENSCATG00000035405	PUF60	100	48.175	Cercocebus_atys
ENSCING00000008436	-	98	48.956	ENSCLAG00000009154	PUF60	92	48.876	Chinchilla_lanigera
ENSCING00000008436	-	95	49.708	ENSCSAG00000008878	PUF60	98	49.237	Chlorocebus_sabaeus
ENSCING00000008436	-	98	48.496	ENSCPBG00000005595	PUF60	99	48.624	Chrysemys_picta_bellii
ENSCING00000008436	-	56	51.264	ENSCING00000002156	-	79	46.729	Ciona_intestinalis
ENSCING00000008436	-	95	48.356	ENSCSAVG00000001385	-	100	49.412	Ciona_savignyi
ENSCING00000008436	-	97	77.847	ENSCSAVG00000004765	-	100	77.226	Ciona_savignyi
ENSCING00000008436	-	78	46.698	ENSCANG00000041843	PUF60	98	46.462	Colobus_angolensis_palliatus
ENSCING00000008436	-	98	48.859	ENSCGRG00001017442	Puf60	92	48.780	Cricetulus_griseus_chok1gshd
ENSCING00000008436	-	98	48.120	ENSCGRG00000003717	Puf60	92	48.231	Cricetulus_griseus_crigri
ENSCING00000008436	-	98	47.348	ENSCSEG00000019887	puf60b	92	48.485	Cynoglossus_semilaevis
ENSCING00000008436	-	95	46.825	ENSCSEG00000014845	-	87	48.611	Cynoglossus_semilaevis
ENSCING00000008436	-	95	48.723	ENSCVAG00000009386	puf60b	98	48.932	Cyprinodon_variegatus
ENSCING00000008436	-	84	50.881	ENSCVAG00000001560	-	95	49.453	Cyprinodon_variegatus
ENSCING00000008436	-	98	47.601	ENSDARG00000032175	puf60a	96	56.637	Danio_rerio
ENSCING00000008436	-	95	45.543	ENSDARG00000001241	puf60b	95	57.874	Danio_rerio
ENSCING00000008436	-	94	41.992	ENSDNOG00000043278	PUF60	89	42.085	Dasypus_novemcinctus
ENSCING00000008436	-	98	48.956	ENSDORG00000004585	Puf60	94	48.968	Dipodomys_ordii
ENSCING00000008436	-	80	54.682	FBgn0028577	hfp	100	55.020	Drosophila_melanogaster
ENSCING00000008436	-	95	48.902	ENSEBUG00000005470	-	88	49.293	Eptatretus_burgeri
ENSCING00000008436	-	99	43.866	ENSEBUG00000014291	puf60b	84	47.875	Eptatretus_burgeri
ENSCING00000008436	-	100	47.970	ENSEASG00005009695	PUF60	100	47.993	Equus_asinus_asinus
ENSCING00000008436	-	99	48.045	ENSECAG00000024681	PUF60	98	48.066	Equus_caballus
ENSCING00000008436	-	99	49.165	ENSELUG00000018443	-	98	50.680	Esox_lucius
ENSCING00000008436	-	95	49.133	ENSELUG00000006507	puf60b	98	57.529	Esox_lucius
ENSCING00000008436	-	100	47.970	ENSFCAG00000001045	PUF60	100	47.993	Felis_catus
ENSCING00000008436	-	98	43.258	ENSFALG00000001136	PUF60	98	44.045	Ficedula_albicollis
ENSCING00000008436	-	98	48.956	ENSFDAG00000017177	PUF60	92	48.876	Fukomys_damarensis
ENSCING00000008436	-	99	46.904	ENSFHEG00000020046	puf60b	99	47.655	Fundulus_heteroclitus
ENSCING00000008436	-	93	49.395	ENSFHEG00000021687	PUF60	99	48.687	Fundulus_heteroclitus
ENSCING00000008436	-	98	40.755	ENSGMOG00000006392	puf60b	99	41.746	Gadus_morhua
ENSCING00000008436	-	51	58.301	ENSGALG00000039901	PUF60	90	50.299	Gallus_gallus
ENSCING00000008436	-	95	49.799	ENSGAFG00000004334	-	99	48.049	Gambusia_affinis
ENSCING00000008436	-	99	46.904	ENSGAFG00000021040	puf60b	98	48.444	Gambusia_affinis
ENSCING00000008436	-	95	46.337	ENSGACG00000001484	-	98	46.429	Gasterosteus_aculeatus
ENSCING00000008436	-	98	41.333	ENSGACG00000004717	puf60b	98	41.445	Gasterosteus_aculeatus
ENSCING00000008436	-	98	49.146	ENSGAGG00000013289	PUF60	93	49.259	Gopherus_agassizii
ENSCING00000008436	-	99	48.603	ENSGGOG00000004646	PUF60	100	48.175	Gorilla_gorilla
ENSCING00000008436	-	99	47.664	ENSHBUG00000015118	puf60b	98	50.000	Haplochromis_burtoni
ENSCING00000008436	-	95	49.023	ENSHBUG00000009634	-	98	49.304	Haplochromis_burtoni
ENSCING00000008436	-	98	48.956	ENSHGLG00000006111	PUF60	92	48.876	Heterocephalus_glaber_female
ENSCING00000008436	-	98	48.956	ENSHGLG00100012362	PUF60	92	48.876	Heterocephalus_glaber_male
ENSCING00000008436	-	95	47.095	ENSHCOG00000000378	-	94	46.817	Hippocampus_comes
ENSCING00000008436	-	95	47.328	ENSHCOG00000015541	puf60b	98	48.190	Hippocampus_comes
ENSCING00000008436	-	95	50.791	ENSIPUG00000002453	puf60a	98	51.859	Ictalurus_punctatus
ENSCING00000008436	-	95	46.498	ENSIPUG00000004660	puf60b	98	46.628	Ictalurus_punctatus
ENSCING00000008436	-	98	48.308	ENSSTOG00000025037	PUF60	93	48.237	Ictidomys_tridecemlineatus
ENSCING00000008436	-	98	48.956	ENSJJAG00000001076	Puf60	93	48.237	Jaculus_jaculus
ENSCING00000008436	-	95	48.752	ENSKMAG00000010106	-	97	48.846	Kryptolebias_marmoratus
ENSCING00000008436	-	95	48.337	ENSKMAG00000016745	puf60b	98	49.119	Kryptolebias_marmoratus
ENSCING00000008436	-	98	63.514	ENSLBEG00000012505	puf60b	99	63.514	Labrus_bergylta
ENSCING00000008436	-	66	46.649	ENSLACG00000005456	PUF60	99	47.453	Latimeria_chalumnae
ENSCING00000008436	-	99	48.417	ENSLOCG00000010106	puf60b	99	49.245	Lepisosteus_oculatus
ENSCING00000008436	-	98	47.932	ENSLAFG00000022929	PUF60	94	47.681	Loxodonta_africana
ENSCING00000008436	-	99	48.876	ENSMFAG00000043373	PUF60	100	48.175	Macaca_fascicularis
ENSCING00000008436	-	99	48.603	ENSMMUG00000013558	PUF60	100	48.175	Macaca_mulatta
ENSCING00000008436	-	99	48.603	ENSMNEG00000031099	PUF60	100	48.175	Macaca_nemestrina
ENSCING00000008436	-	95	50.295	ENSMLEG00000040009	PUF60	98	49.904	Mandrillus_leucophaeus
ENSCING00000008436	-	97	47.992	ENSMAMG00000019476	-	97	48.282	Mastacembelus_armatus
ENSCING00000008436	-	98	47.538	ENSMAMG00000010394	puf60b	98	48.190	Mastacembelus_armatus
ENSCING00000008436	-	95	48.743	ENSMZEG00005019425	-	96	49.016	Maylandia_zebra
ENSCING00000008436	-	99	45.841	ENSMZEG00005018515	puf60b	98	50.000	Maylandia_zebra
ENSCING00000008436	-	98	47.866	ENSMGAG00000013070	PUF60	98	48.423	Meleagris_gallopavo
ENSCING00000008436	-	54	57.836	ENSMAUG00000014267	-	64	57.836	Mesocricetus_auratus
ENSCING00000008436	-	93	42.623	ENSMAUG00000018549	-	95	41.968	Mesocricetus_auratus
ENSCING00000008436	-	100	47.970	ENSMICG00000012226	PUF60	100	48.346	Microcebus_murinus
ENSCING00000008436	-	98	48.859	ENSMOCG00000018780	Puf60	93	48.141	Microtus_ochrogaster
ENSCING00000008436	-	97	45.850	ENSMMOG00000018059	-	99	49.406	Mola_mola
ENSCING00000008436	-	95	49.222	ENSMMOG00000004217	puf60b	98	49.222	Mola_mola
ENSCING00000008436	-	98	48.956	ENSMODG00000009161	PUF60	94	48.876	Monodelphis_domestica
ENSCING00000008436	-	98	48.509	ENSMALG00000006797	puf60b	98	48.509	Monopterus_albus
ENSCING00000008436	-	95	49.318	ENSMALG00000000200	-	96	49.119	Monopterus_albus
ENSCING00000008436	-	98	49.336	MGP_CAROLIEiJ_G0019910	Puf60	92	49.343	Mus_caroli
ENSCING00000008436	-	98	49.336	ENSMUSG00000002524	Puf60	92	49.343	Mus_musculus
ENSCING00000008436	-	98	49.336	MGP_PahariEiJ_G0019920	Puf60	92	49.343	Mus_pahari
ENSCING00000008436	-	98	49.336	MGP_SPRETEiJ_G0020812	Puf60	92	49.343	Mus_spretus
ENSCING00000008436	-	98	48.496	ENSMPUG00000008137	PUF60	92	48.141	Mustela_putorius_furo
ENSCING00000008436	-	100	46.369	ENSMLUG00000013032	-	100	46.593	Myotis_lucifugus
ENSCING00000008436	-	98	47.655	ENSMLUG00000000238	-	93	47.681	Myotis_lucifugus
ENSCING00000008436	-	98	48.956	ENSNGAG00000000712	Puf60	98	49.046	Nannospalax_galili
ENSCING00000008436	-	81	43.640	ENSNBRG00000013047	puf60b	96	44.222	Neolamprologus_brichardi
ENSCING00000008436	-	95	48.824	ENSNBRG00000017223	-	96	47.945	Neolamprologus_brichardi
ENSCING00000008436	-	100	49.156	ENSNLEG00000002156	PUF60	100	48.803	Nomascus_leucogenys
ENSCING00000008436	-	70	58.687	ENSOPRG00000002147	PUF60	67	58.687	Ochotona_princeps
ENSCING00000008436	-	95	39.321	ENSODEG00000015513	-	94	40.771	Octodon_degus
ENSCING00000008436	-	54	57.993	ENSODEG00000014024	-	64	56.569	Octodon_degus
ENSCING00000008436	-	98	47.646	ENSONIG00000006247	puf60b	98	48.571	Oreochromis_niloticus
ENSCING00000008436	-	95	48.743	ENSONIG00000014030	-	95	49.016	Oreochromis_niloticus
ENSCING00000008436	-	95	47.454	ENSOANG00000006962	PUF60	98	47.773	Ornithorhynchus_anatinus
ENSCING00000008436	-	99	47.818	ENSORLG00000012279	puf60b	99	48.387	Oryzias_latipes
ENSCING00000008436	-	95	48.141	ENSORLG00000028655	-	97	48.228	Oryzias_latipes
ENSCING00000008436	-	95	48.431	ENSORLG00020018144	-	95	48.521	Oryzias_latipes_hni
ENSCING00000008436	-	99	47.180	ENSORLG00020007333	puf60	99	47.744	Oryzias_latipes_hni
ENSCING00000008436	-	95	48.431	ENSORLG00015016833	-	95	48.521	Oryzias_latipes_hsok
ENSCING00000008436	-	99	47.378	ENSORLG00015007718	puf60b	99	47.378	Oryzias_latipes_hsok
ENSCING00000008436	-	95	48.924	ENSOMEG00000022185	-	95	49.012	Oryzias_melastigma
ENSCING00000008436	-	99	47.407	ENSOMEG00000001643	puf60b	99	47.593	Oryzias_melastigma
ENSCING00000008436	-	98	48.218	ENSOGAG00000006259	PUF60	93	48.237	Otolemur_garnettii
ENSCING00000008436	-	98	49.710	ENSOARG00000016235	PUF60	98	49.146	Ovis_aries
ENSCING00000008436	-	99	48.603	ENSPPAG00000029933	PUF60	100	48.175	Pan_paniscus
ENSCING00000008436	-	100	47.970	ENSPPRG00000003257	PUF60	100	47.993	Panthera_pardus
ENSCING00000008436	-	98	49.057	ENSPTIG00000009795	PUF60	99	49.067	Panthera_tigris_altaica
ENSCING00000008436	-	99	48.603	ENSPTRG00000020670	PUF60	100	48.175	Pan_troglodytes
ENSCING00000008436	-	98	49.427	ENSPTRG00000043963	-	98	48.423	Pan_troglodytes
ENSCING00000008436	-	99	48.603	ENSPANG00000021936	PUF60	100	48.175	Papio_anubis
ENSCING00000008436	-	99	47.715	ENSPKIG00000004295	puf60a	99	49.438	Paramormyrops_kingsleyae
ENSCING00000008436	-	98	49.336	ENSPKIG00000012204	puf60b	99	50.192	Paramormyrops_kingsleyae
ENSCING00000008436	-	98	48.496	ENSPSIG00000004679	PUF60	99	48.609	Pelodiscus_sinensis
ENSCING00000008436	-	99	47.320	ENSPMGG00000013444	puf60b	98	48.743	Periophthalmus_magnuspinnatus
ENSCING00000008436	-	98	48.859	ENSPEMG00000008820	Puf60	92	48.780	Peromyscus_maniculatus_bairdii
ENSCING00000008436	-	98	48.956	ENSPCIG00000020270	PUF60	100	47.794	Phascolarctos_cinereus
ENSCING00000008436	-	95	49.901	ENSPFOG00000011118	-	97	49.516	Poecilia_formosa
ENSCING00000008436	-	99	46.904	ENSPFOG00000019217	puf60b	99	48.375	Poecilia_formosa
ENSCING00000008436	-	95	48.330	ENSPLAG00000010754	puf60b	98	48.544	Poecilia_latipinna
ENSCING00000008436	-	95	50.495	ENSPLAG00000017025	-	90	49.318	Poecilia_latipinna
ENSCING00000008436	-	95	49.901	ENSPMEG00000009767	-	90	49.612	Poecilia_mexicana
ENSCING00000008436	-	99	46.904	ENSPMEG00000000838	puf60b	98	48.544	Poecilia_mexicana
ENSCING00000008436	-	99	45.704	ENSPREG00000005440	puf60b	98	47.184	Poecilia_reticulata
ENSCING00000008436	-	76	45.863	ENSPPYG00000018951	-	94	45.497	Pongo_abelii
ENSCING00000008436	-	75	46.172	ENSPCAG00000014837	PUF60	98	46.226	Procavia_capensis
ENSCING00000008436	-	100	47.970	ENSPCOG00000027981	PUF60	100	48.346	Propithecus_coquereli
ENSCING00000008436	-	83	55.484	ENSPVAG00000016167	PUF60	63	55.484	Pteropus_vampyrus
ENSCING00000008436	-	95	48.743	ENSPNYG00000004273	-	96	49.016	Pundamilia_nyererei
ENSCING00000008436	-	95	48.356	ENSPNYG00000002556	puf60b	98	49.315	Pundamilia_nyererei
ENSCING00000008436	-	98	49.432	ENSPNAG00000019909	puf60a	99	50.566	Pygocentrus_nattereri
ENSCING00000008436	-	95	48.337	ENSPNAG00000019415	puf60b	87	48.381	Pygocentrus_nattereri
ENSCING00000008436	-	98	49.336	ENSRNOG00000009960	Puf60	92	49.343	Rattus_norvegicus
ENSCING00000008436	-	99	48.603	ENSRBIG00000035274	PUF60	100	48.175	Rhinopithecus_bieti
ENSCING00000008436	-	99	48.603	ENSRROG00000029360	PUF60	100	48.175	Rhinopithecus_roxellana
ENSCING00000008436	-	98	50.484	ENSSBOG00000027089	PUF60	98	49.522	Saimiri_boliviensis_boliviensis
ENSCING00000008436	-	88	47.817	ENSSHAG00000006668	PUF60	90	47.844	Sarcophilus_harrisii
ENSCING00000008436	-	95	47.441	ENSSFOG00015019619	puf60b	99	47.942	Scleropages_formosus
ENSCING00000008436	-	81	63.492	ENSSFOG00015019371	puf60a	98	50.301	Scleropages_formosus
ENSCING00000008436	-	75	64.286	ENSSMAG00000016381	puf60b	71	64.286	Scophthalmus_maximus
ENSCING00000008436	-	98	47.575	ENSSDUG00000009935	puf60b	99	48.134	Seriola_dumerili
ENSCING00000008436	-	92	48.297	ENSSDUG00000007048	-	93	48.687	Seriola_dumerili
ENSCING00000008436	-	99	47.320	ENSSLDG00000024011	puf60b	99	48.417	Seriola_lalandi_dorsalis
ENSCING00000008436	-	95	47.835	ENSSLDG00000007366	-	98	47.451	Seriola_lalandi_dorsalis
ENSCING00000008436	-	53	50.758	ENSSPUG00000013518	PUF60	70	50.758	Sphenodon_punctatus
ENSCING00000008436	-	95	47.266	ENSSPAG00000020285	-	98	48.833	Stegastes_partitus
ENSCING00000008436	-	99	47.156	ENSSPAG00000012144	puf60b	99	48.244	Stegastes_partitus
ENSCING00000008436	-	100	48.790	ENSSSCG00000038800	PUF60	100	48.803	Sus_scrofa
ENSCING00000008436	-	98	48.776	ENSTGUG00000012797	-	99	49.905	Taeniopygia_guttata
ENSCING00000008436	-	95	47.581	ENSTRUG00000008843	-	98	49.004	Takifugu_rubripes
ENSCING00000008436	-	99	46.950	ENSTRUG00000005420	puf60b	99	47.048	Takifugu_rubripes
ENSCING00000008436	-	95	48.617	ENSTNIG00000003069	-	99	47.977	Tetraodon_nigroviridis
ENSCING00000008436	-	98	47.566	ENSTNIG00000013675	puf60b	99	47.917	Tetraodon_nigroviridis
ENSCING00000008436	-	70	43.642	ENSTBEG00000001899	-	100	44.118	Tupaia_belangeri
ENSCING00000008436	-	95	48.743	ENSTTRG00000017088	PUF60	98	48.375	Tursiops_truncatus
ENSCING00000008436	-	100	47.970	ENSUAMG00000024917	PUF60	100	47.993	Ursus_americanus
ENSCING00000008436	-	98	45.849	ENSUMAG00000000272	PUF60	93	45.522	Ursus_maritimus
ENSCING00000008436	-	98	48.956	ENSVVUG00000022527	PUF60	98	49.046	Vulpes_vulpes
ENSCING00000008436	-	98	50.191	ENSXETG00000012469	puf60	99	50.287	Xenopus_tropicalis
ENSCING00000008436	-	95	48.330	ENSXCOG00000012355	puf60b	98	48.544	Xiphophorus_couchianus
ENSCING00000008436	-	99	47.538	ENSXMAG00000001862	puf60b	98	48.444	Xiphophorus_maculatus
ENSCING00000008436	-	95	50.000	ENSXMAG00000010507	-	98	50.000	Xiphophorus_maculatus