EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008526 (Gene tree)
Gene ID: 100186513
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 8601 bases
Position: chr11:4456577-4465177
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000017384	PRP21_like_P	PF12230.8	4.4e-45	1	1
ENSCINP00000017384	Surp	PF01805.20	9.4e-41	1	2
ENSCINP00000017384	Surp	PF01805.20	9.4e-41	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000017384	-	2418	-	ENSCINP00000017384	784 (aa)	-	F7AI93

Gene Model

Click here to download ENSCING00000008526's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008526's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008526	-	66	58.238	ENSG00000099995	SF3A1	94	52.513	Homo_sapiens
ENSCING00000008526	-	66	58.046	ENSAMEG00000007737	SF3A1	94	52.116	Ailuropoda_melanoleuca
ENSCING00000008526	-	66	58.126	ENSATEG00000021201	sf3a1	94	51.571	Anabas_testudineus
ENSCING00000008526	-	96	52.673	ENSAPLG00000009057	SF3A1	96	52.312	Anas_platyrhynchos
ENSCING00000008526	-	97	50.501	ENSACAG00000009415	SF3A1	95	50.704	Anolis_carolinensis
ENSCING00000008526	-	66	58.046	ENSANAG00000032045	SF3A1	94	52.381	Aotus_nancymaae
ENSCING00000008526	-	66	58.095	ENSACLG00000012622	sf3a1	97	52.163	Astatotilapia_calliptera
ENSCING00000008526	-	66	58.046	ENSBTAG00000003390	SF3A1	94	52.249	Bos_taurus
ENSCING00000008526	-	84	43.750	WBGene00004188	prp-21	90	44.355	Caenorhabditis_elegans
ENSCING00000008526	-	66	58.046	ENSCJAG00000010370	SF3A1	94	52.381	Callithrix_jacchus
ENSCING00000008526	-	66	58.046	ENSCAFG00000012559	SF3A1	94	52.116	Canis_familiaris
ENSCING00000008526	-	66	58.046	ENSCAFG00020000838	SF3A1	94	52.116	Canis_lupus_dingo
ENSCING00000008526	-	66	58.046	ENSCHIG00000018642	SF3A1	94	52.381	Capra_hircus
ENSCING00000008526	-	66	58.046	ENSTSYG00000004739	SF3A1	94	52.249	Carlito_syrichta
ENSCING00000008526	-	67	53.759	ENSCAPG00000015414	SF3A1	97	42.590	Cavia_aperea
ENSCING00000008526	-	66	58.046	ENSCPOG00000014589	SF3A1	94	52.249	Cavia_porcellus
ENSCING00000008526	-	66	58.046	ENSCCAG00000032006	SF3A1	94	52.381	Cebus_capucinus
ENSCING00000008526	-	66	58.238	ENSCATG00000029241	SF3A1	94	52.513	Cercocebus_atys
ENSCING00000008526	-	66	58.238	ENSCLAG00000006508	SF3A1	94	52.381	Chinchilla_lanigera
ENSCING00000008526	-	66	58.238	ENSCSAG00000009470	SF3A1	94	52.513	Chlorocebus_sabaeus
ENSCING00000008526	-	54	66.794	ENSCHOG00000005201	SF3A1	60	66.939	Choloepus_hoffmanni
ENSCING00000008526	-	68	57.143	ENSCPBG00000007595	SF3A1	94	52.715	Chrysemys_picta_bellii
ENSCING00000008526	-	98	74.202	ENSCSAVG00000005608	-	100	76.380	Ciona_savignyi
ENSCING00000008526	-	66	58.238	ENSCANG00000033564	SF3A1	94	52.513	Colobus_angolensis_palliatus
ENSCING00000008526	-	65	58.027	ENSCGRG00001008933	Sf3a1	96	53.040	Cricetulus_griseus_chok1gshd
ENSCING00000008526	-	65	58.027	ENSCGRG00000006127	Sf3a1	96	53.040	Cricetulus_griseus_crigri
ENSCING00000008526	-	97	51.781	ENSCSEG00000010792	sf3a1	97	52.246	Cynoglossus_semilaevis
ENSCING00000008526	-	98	52.025	ENSCVAG00000004560	sf3a1	97	52.363	Cyprinodon_variegatus
ENSCING00000008526	-	97	51.847	ENSDNOG00000010629	SF3A1	94	52.111	Dasypus_novemcinctus
ENSCING00000008526	-	66	58.046	ENSDORG00000005613	Sf3a1	94	52.249	Dipodomys_ordii
ENSCING00000008526	-	84	50.092	FBgn0266917	Sf3a1	96	44.000	Drosophila_melanogaster
ENSCING00000008526	-	65	57.447	ENSETEG00000017194	SF3A1	93	49.630	Echinops_telfairi
ENSCING00000008526	-	98	49.328	ENSEBUG00000001285	sf3a1	93	49.689	Eptatretus_burgeri
ENSCING00000008526	-	66	58.046	ENSEASG00005010254	SF3A1	94	52.249	Equus_asinus_asinus
ENSCING00000008526	-	66	58.046	ENSECAG00000023962	SF3A1	94	52.249	Equus_caballus
ENSCING00000008526	-	70	68.852	ENSEEUG00000003159	SF3A1	78	68.852	Erinaceus_europaeus
ENSCING00000008526	-	98	51.899	ENSELUG00000022578	sf3a1	98	52.345	Esox_lucius
ENSCING00000008526	-	66	58.046	ENSFCAG00000011932	SF3A1	94	52.116	Felis_catus
ENSCING00000008526	-	65	57.393	ENSFALG00000006944	SF3A1	94	51.660	Ficedula_albicollis
ENSCING00000008526	-	66	58.046	ENSFDAG00000009560	SF3A1	94	52.249	Fukomys_damarensis
ENSCING00000008526	-	66	57.553	ENSFHEG00000010866	sf3a1	97	52.490	Fundulus_heteroclitus
ENSCING00000008526	-	98	49.937	ENSGMOG00000016024	sf3a1	97	51.083	Gadus_morhua
ENSCING00000008526	-	96	51.958	ENSGALG00000007937	SF3A1	94	52.249	Gallus_gallus
ENSCING00000008526	-	97	52.113	ENSGAFG00000009111	sf3a1	97	52.746	Gambusia_affinis
ENSCING00000008526	-	68	57.011	ENSGAGG00000000762	SF3A1	94	51.519	Gopherus_agassizii
ENSCING00000008526	-	66	58.238	ENSGGOG00000012631	SF3A1	94	52.513	Gorilla_gorilla
ENSCING00000008526	-	98	51.908	ENSHBUG00000015795	sf3a1	97	52.163	Haplochromis_burtoni
ENSCING00000008526	-	66	58.046	ENSHGLG00000007907	SF3A1	94	52.249	Heterocephalus_glaber_female
ENSCING00000008526	-	66	58.046	ENSHGLG00100013799	SF3A1	94	52.249	Heterocephalus_glaber_male
ENSCING00000008526	-	98	50.826	ENSHCOG00000015423	sf3a1	98	51.646	Hippocampus_comes
ENSCING00000008526	-	97	52.051	ENSIPUG00000002470	sf3a1	98	52.551	Ictalurus_punctatus
ENSCING00000008526	-	66	57.905	ENSSTOG00000013892	SF3A1	97	52.448	Ictidomys_tridecemlineatus
ENSCING00000008526	-	66	58.046	ENSJJAG00000022566	Sf3a1	94	52.513	Jaculus_jaculus
ENSCING00000008526	-	98	50.566	ENSKMAG00000002400	sf3a1	97	52.057	Kryptolebias_marmoratus
ENSCING00000008526	-	98	52.645	ENSLACG00000003565	SF3A1	98	53.038	Latimeria_chalumnae
ENSCING00000008526	-	97	52.118	ENSLOCG00000008251	sf3a1	97	52.417	Lepisosteus_oculatus
ENSCING00000008526	-	97	38.284	ENSLAFG00000026032	-	97	38.041	Loxodonta_africana
ENSCING00000008526	-	66	58.046	ENSLAFG00000000448	SF3A1	96	52.393	Loxodonta_africana
ENSCING00000008526	-	66	58.254	ENSMFAG00000031979	SF3A1	94	52.513	Macaca_fascicularis
ENSCING00000008526	-	66	58.254	ENSMMUG00000005547	SF3A1	94	52.513	Macaca_mulatta
ENSCING00000008526	-	66	58.254	ENSMNEG00000037229	SF3A1	94	52.513	Macaca_nemestrina
ENSCING00000008526	-	66	58.238	ENSMLEG00000041908	SF3A1	94	52.513	Mandrillus_leucophaeus
ENSCING00000008526	-	98	51.786	ENSMAMG00000006460	sf3a1	96	52.357	Mastacembelus_armatus
ENSCING00000008526	-	66	58.095	ENSMZEG00005009633	sf3a1	97	52.163	Maylandia_zebra
ENSCING00000008526	-	96	52.219	ENSMGAG00000001330	SF3A1	97	52.249	Meleagris_gallopavo
ENSCING00000008526	-	66	57.495	ENSMICG00000010038	SF3A1	94	52.381	Microcebus_murinus
ENSCING00000008526	-	66	58.238	ENSMOCG00000008438	Sf3a1	96	53.040	Microtus_ochrogaster
ENSCING00000008526	-	98	50.190	ENSMMOG00000015588	sf3a1	98	50.690	Mola_mola
ENSCING00000008526	-	67	57.795	ENSMODG00000009270	SF3A1	94	52.053	Monodelphis_domestica
ENSCING00000008526	-	98	52.296	ENSMALG00000000148	sf3a1	99	51.197	Monopterus_albus
ENSCING00000008526	-	66	57.663	MGP_CAROLIEiJ_G0016029	Sf3a1	94	52.778	Mus_caroli
ENSCING00000008526	-	66	57.663	ENSMUSG00000002129	Sf3a1	94	52.778	Mus_musculus
ENSCING00000008526	-	66	58.238	MGP_PahariEiJ_G0016862	Sf3a1	94	52.356	Mus_pahari
ENSCING00000008526	-	66	57.663	MGP_SPRETEiJ_G0016870	Sf3a1	94	52.778	Mus_spretus
ENSCING00000008526	-	66	58.238	ENSMPUG00000013144	SF3A1	94	51.984	Mustela_putorius_furo
ENSCING00000008526	-	66	58.046	ENSMLUG00000002139	SF3A1	94	52.249	Myotis_lucifugus
ENSCING00000008526	-	66	57.854	ENSNGAG00000016977	Sf3a1	94	52.381	Nannospalax_galili
ENSCING00000008526	-	97	51.720	ENSNBRG00000016642	sf3a1	95	51.693	Neolamprologus_brichardi
ENSCING00000008526	-	66	58.238	ENSNLEG00000003686	SF3A1	94	52.513	Nomascus_leucogenys
ENSCING00000008526	-	94	47.767	ENSMEUG00000008741	SF3A1	94	47.850	Notamacropus_eugenii
ENSCING00000008526	-	66	58.046	ENSOPRG00000016636	SF3A1	94	52.249	Ochotona_princeps
ENSCING00000008526	-	67	57.795	ENSODEG00000002571	SF3A1	94	52.381	Octodon_degus
ENSCING00000008526	-	98	51.527	ENSONIG00000010848	sf3a1	97	51.908	Oreochromis_niloticus
ENSCING00000008526	-	67	57.925	ENSOCUG00000007633	SF3A1	97	52.369	Oryctolagus_cuniculus
ENSCING00000008526	-	66	58.397	ENSORLG00000013050	sf3a1	97	51.678	Oryzias_latipes
ENSCING00000008526	-	95	51.044	ENSORLG00020003236	sf3a1	94	50.973	Oryzias_latipes_hni
ENSCING00000008526	-	66	58.779	ENSORLG00015017411	sf3a1	97	53.161	Oryzias_latipes_hsok
ENSCING00000008526	-	98	52.010	ENSOMEG00000013362	sf3a1	97	52.465	Oryzias_melastigma
ENSCING00000008526	-	66	58.046	ENSOGAG00000012931	SF3A1	94	52.513	Otolemur_garnettii
ENSCING00000008526	-	66	57.663	ENSOARG00000006849	SF3A1	94	52.122	Ovis_aries
ENSCING00000008526	-	97	50.828	ENSPPAG00000041790	SF3A1	94	52.318	Pan_paniscus
ENSCING00000008526	-	66	58.046	ENSPPRG00000004391	SF3A1	94	52.116	Panthera_pardus
ENSCING00000008526	-	66	58.046	ENSPTIG00000000844	SF3A1	97	51.984	Panthera_tigris_altaica
ENSCING00000008526	-	66	58.238	ENSPTRG00000014240	SF3A1	94	52.513	Pan_troglodytes
ENSCING00000008526	-	66	58.238	ENSPANG00000020772	SF3A1	94	52.513	Papio_anubis
ENSCING00000008526	-	78	69.565	ENSPSIG00000012803	SF3A1	96	69.565	Pelodiscus_sinensis
ENSCING00000008526	-	66	57.663	ENSPMGG00000023096	sf3a1	100	52.503	Periophthalmus_magnuspinnatus
ENSCING00000008526	-	65	58.221	ENSPEMG00000009494	Sf3a1	96	53.040	Peromyscus_maniculatus_bairdii
ENSCING00000008526	-	65	56.673	ENSPMAG00000007139	-	86	56.582	Petromyzon_marinus
ENSCING00000008526	-	66	58.046	ENSPCIG00000022692	SF3A1	94	52.185	Phascolarctos_cinereus
ENSCING00000008526	-	93	46.879	ENSPFOG00000016768	sf3a1	93	47.872	Poecilia_formosa
ENSCING00000008526	-	98	52.113	ENSPLAG00000017268	sf3a1	97	52.874	Poecilia_latipinna
ENSCING00000008526	-	84	49.627	ENSPMEG00000019811	sf3a1	97	49.926	Poecilia_mexicana
ENSCING00000008526	-	98	51.729	ENSPREG00000010347	sf3a1	97	52.235	Poecilia_reticulata
ENSCING00000008526	-	66	58.238	ENSPPYG00000011707	SF3A1	94	52.513	Pongo_abelii
ENSCING00000008526	-	66	57.306	ENSPCOG00000026630	SF3A1	94	52.381	Propithecus_coquereli
ENSCING00000008526	-	64	56.746	ENSPVAG00000017719	SF3A1	94	51.921	Pteropus_vampyrus
ENSCING00000008526	-	98	51.908	ENSPNYG00000018706	sf3a1	97	52.163	Pundamilia_nyererei
ENSCING00000008526	-	98	52.000	ENSPNAG00000003721	sf3a1	98	52.725	Pygocentrus_nattereri
ENSCING00000008526	-	66	57.663	ENSRNOG00000005218	Sf3a1	94	52.646	Rattus_norvegicus
ENSCING00000008526	-	66	58.238	ENSRBIG00000032167	SF3A1	94	52.513	Rhinopithecus_bieti
ENSCING00000008526	-	66	58.238	ENSRROG00000044908	SF3A1	94	52.513	Rhinopithecus_roxellana
ENSCING00000008526	-	68	56.115	ENSSBOG00000021960	SF3A1	97	50.599	Saimiri_boliviensis_boliviensis
ENSCING00000008526	-	67	55.703	ENSSHAG00000003666	SF3A1	97	50.907	Sarcophilus_harrisii
ENSCING00000008526	-	97	51.145	ENSSFOG00015004579	sf3a1	95	51.933	Scleropages_formosus
ENSCING00000008526	-	99	51.015	ENSSMAG00000004275	sf3a1	98	51.392	Scophthalmus_maximus
ENSCING00000008526	-	97	50.941	ENSSDUG00000022219	sf3a1	97	51.819	Seriola_dumerili
ENSCING00000008526	-	97	50.941	ENSSLDG00000012642	sf3a1	97	51.819	Seriola_lalandi_dorsalis
ENSCING00000008526	-	66	58.046	ENSSSCG00000010002	SF3A1	94	51.984	Sus_scrofa
ENSCING00000008526	-	96	51.900	ENSTGUG00000010547	SF3A1	97	51.783	Taeniopygia_guttata
ENSCING00000008526	-	98	51.069	ENSTRUG00000006118	sf3a1	99	51.955	Takifugu_rubripes
ENSCING00000008526	-	66	55.939	ENSTBEG00000012771	SF3A1	94	48.016	Tupaia_belangeri
ENSCING00000008526	-	66	57.553	ENSTTRG00000001535	SF3A1	94	52.180	Tursiops_truncatus
ENSCING00000008526	-	66	58.046	ENSUAMG00000006750	SF3A1	93	51.600	Ursus_americanus
ENSCING00000008526	-	97	51.465	ENSUMAG00000016665	SF3A1	96	51.760	Ursus_maritimus
ENSCING00000008526	-	66	58.046	ENSVVUG00000003075	SF3A1	94	52.116	Vulpes_vulpes
ENSCING00000008526	-	97	49.936	ENSXETG00000016144	sf3a1	84	66.977	Xenopus_tropicalis
ENSCING00000008526	-	98	51.918	ENSXCOG00000015653	sf3a1	97	52.551	Xiphophorus_couchianus
ENSCING00000008526	-	98	52.046	ENSXMAG00000002753	sf3a1	97	52.551	Xiphophorus_maculatus