EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008535 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: leucine--tRNA ligase%2C cytoplasmic
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 13494 bases
Position: chr2:3530753-3544246
Accession: 100179230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000017405	tRNA-synt_1g	PF09334.11	3.3e-18	1	2
ENSCINP00000017405	tRNA-synt_1g	PF09334.11	3.3e-18	2	2
ENSCINP00000017405	Anticodon_1	PF08264.13	1.5e-16	1	1
ENSCINP00000017405	tRNA-synt_1	PF00133.22	1.3e-41	1	2
ENSCINP00000017405	tRNA-synt_1	PF00133.22	1.3e-41	2	2
ENSCINP00000017405	tRNA-synt_1e	PF01406.19	9.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000017405	-	3645	XM_009859328	ENSCINP00000017405	1180 (aa)	XP_009857630	A0A1W3JM58

Gene Model

Click here to download ENSCING00000008535's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008535's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008535	-	99	64.407	ENSG00000133706	LARS	100	65.214	Homo_sapiens
ENSCING00000008535	-	99	63.889	ENSAPOG00000010585	larsb	99	65.862	Acanthochromis_polyacanthus
ENSCING00000008535	-	99	64.691	ENSAMEG00000017584	LARS	99	64.805	Ailuropoda_melanoleuca
ENSCING00000008535	-	98	62.715	ENSACIG00000014026	larsb	98	63.293	Amphilophus_citrinellus
ENSCING00000008535	-	99	64.334	ENSAOCG00000016931	larsb	99	64.334	Amphiprion_ocellaris
ENSCING00000008535	-	99	64.334	ENSAPEG00000017720	larsb	99	64.334	Amphiprion_percula
ENSCING00000008535	-	98	62.759	ENSATEG00000010441	larsb	98	62.931	Anabas_testudineus
ENSCING00000008535	-	95	65.419	ENSAPLG00000008145	LARS	99	65.214	Anas_platyrhynchos
ENSCING00000008535	-	98	64.686	ENSACAG00000013916	LARS	98	64.686	Anolis_carolinensis
ENSCING00000008535	-	94	62.000	ENSANAG00000014375	LARS	99	62.000	Aotus_nancymaae
ENSCING00000008535	-	98	64.267	ENSACLG00000010881	larsb	98	64.953	Astatotilapia_calliptera
ENSCING00000008535	-	99	64.098	ENSAMXG00000019979	larsb	99	64.153	Astyanax_mexicanus
ENSCING00000008535	-	98	65.719	ENSBTAG00000006765	LARS	99	65.719	Bos_taurus
ENSCING00000008535	-	99	53.859	WBGene00003073	lars-1	99	53.943	Caenorhabditis_elegans
ENSCING00000008535	-	99	64.492	ENSCJAG00000021314	LARS	100	65.422	Callithrix_jacchus
ENSCING00000008535	-	99	64.631	ENSCAFG00000006431	LARS	99	64.631	Canis_familiaris
ENSCING00000008535	-	100	64.611	ENSCAFG00020025009	LARS	100	64.611	Canis_lupus_dingo
ENSCING00000008535	-	98	66.009	ENSCHIG00000014949	LARS	99	66.123	Capra_hircus
ENSCING00000008535	-	98	64.691	ENSTSYG00000001253	LARS	99	64.691	Carlito_syrichta
ENSCING00000008535	-	95	52.580	ENSCAPG00000015676	LARS	95	52.847	Cavia_aperea
ENSCING00000008535	-	98	64.384	ENSCPOG00000012329	LARS	99	64.469	Cavia_porcellus
ENSCING00000008535	-	99	64.352	ENSCCAG00000020789	LARS	99	64.467	Cebus_capucinus
ENSCING00000008535	-	95	66.130	ENSCATG00000033463	LARS	99	65.825	Cercocebus_atys
ENSCING00000008535	-	98	65.034	ENSCLAG00000011193	LARS	99	65.034	Chinchilla_lanigera
ENSCING00000008535	-	98	64.979	ENSCSAG00000012280	LARS	97	65.094	Chlorocebus_sabaeus
ENSCING00000008535	-	87	64.041	ENSCHOG00000009309	LARS	88	64.041	Choloepus_hoffmanni
ENSCING00000008535	-	98	65.146	ENSCPBG00000008415	LARS	99	66.068	Chrysemys_picta_bellii
ENSCING00000008535	-	99	82.840	ENSCSAVG00000009040	-	100	85.122	Ciona_savignyi
ENSCING00000008535	-	99	64.686	ENSCANG00000031137	LARS	99	64.801	Colobus_angolensis_palliatus
ENSCING00000008535	-	90	60.804	ENSCGRG00001004647	Lars	98	60.592	Cricetulus_griseus_chok1gshd
ENSCING00000008535	-	98	62.543	ENSCGRG00000007284	Lars	99	62.607	Cricetulus_griseus_crigri
ENSCING00000008535	-	99	63.835	ENSCSEG00000014984	larsb	100	63.144	Cynoglossus_semilaevis
ENSCING00000008535	-	99	63.406	ENSCVAG00000014685	larsb	99	64.081	Cyprinodon_variegatus
ENSCING00000008535	-	67	62.738	ENSDARG00000019280	larsb	98	62.738	Danio_rerio
ENSCING00000008535	-	95	65.865	ENSDNOG00000017963	LARS	99	65.865	Dasypus_novemcinctus
ENSCING00000008535	-	98	61.063	ENSDORG00000014913	Lars	99	61.063	Dipodomys_ordii
ENSCING00000008535	-	98	57.204	FBgn0284253	LeuRS	99	56.741	Drosophila_melanogaster
ENSCING00000008535	-	94	53.201	ENSETEG00000003145	LARS	99	53.201	Echinops_telfairi
ENSCING00000008535	-	94	55.843	ENSEBUG00000014985	larsb	99	55.169	Eptatretus_burgeri
ENSCING00000008535	-	98	65.202	ENSEASG00005020569	LARS	98	65.318	Equus_asinus_asinus
ENSCING00000008535	-	98	65.289	ENSECAG00000008963	LARS	99	66.367	Equus_caballus
ENSCING00000008535	-	85	72.222	ENSEEUG00000014854	LARS	91	56.448	Erinaceus_europaeus
ENSCING00000008535	-	99	63.861	ENSELUG00000023311	larsb	99	63.776	Esox_lucius
ENSCING00000008535	-	99	64.456	ENSFCAG00000008715	LARS	99	67.451	Felis_catus
ENSCING00000008535	-	98	65.292	ENSFALG00000003209	LARS	91	65.292	Ficedula_albicollis
ENSCING00000008535	-	98	64.488	ENSFDAG00000020764	LARS	99	64.488	Fukomys_damarensis
ENSCING00000008535	-	91	68.923	ENSFHEG00000010437	larsb	99	70.222	Fundulus_heteroclitus
ENSCING00000008535	-	99	63.551	ENSGMOG00000013645	larsb	99	63.551	Gadus_morhua
ENSCING00000008535	-	98	65.180	ENSGALG00000007494	LARS	99	64.923	Gallus_gallus
ENSCING00000008535	-	99	63.238	ENSGAFG00000005029	larsb	99	63.912	Gambusia_affinis
ENSCING00000008535	-	99	64.061	ENSGACG00000020720	larsb	99	64.061	Gasterosteus_aculeatus
ENSCING00000008535	-	99	64.456	ENSGAGG00000002353	LARS	99	64.456	Gopherus_agassizii
ENSCING00000008535	-	99	64.407	ENSGGOG00000004103	LARS	100	64.298	Gorilla_gorilla
ENSCING00000008535	-	98	63.526	ENSHBUG00000003051	larsb	99	65.940	Haplochromis_burtoni
ENSCING00000008535	-	98	64.953	ENSHGLG00000006937	LARS	99	65.039	Heterocephalus_glaber_female
ENSCING00000008535	-	98	64.953	ENSHGLG00100002801	LARS	99	65.039	Heterocephalus_glaber_male
ENSCING00000008535	-	98	63.185	ENSHCOG00000003651	larsb	98	63.870	Hippocampus_comes
ENSCING00000008535	-	98	64.853	ENSIPUG00000010756	lars	99	64.940	Ictalurus_punctatus
ENSCING00000008535	-	98	65.322	ENSSTOG00000002356	LARS	99	65.322	Ictidomys_tridecemlineatus
ENSCING00000008535	-	99	64.346	ENSJJAG00000015265	Lars	100	64.322	Jaculus_jaculus
ENSCING00000008535	-	98	64.212	ENSKMAG00000009903	larsb	98	64.298	Kryptolebias_marmoratus
ENSCING00000008535	-	99	63.966	ENSLBEG00000025237	larsb	99	63.943	Labrus_bergylta
ENSCING00000008535	-	98	64.206	ENSLACG00000009321	LARS	98	64.292	Latimeria_chalumnae
ENSCING00000008535	-	98	63.543	ENSLOCG00000010442	larsb	99	63.543	Lepisosteus_oculatus
ENSCING00000008535	-	98	65.232	ENSLAFG00000000318	LARS	99	65.232	Loxodonta_africana
ENSCING00000008535	-	99	64.516	ENSMFAG00000038685	LARS	99	64.979	Macaca_fascicularis
ENSCING00000008535	-	99	64.322	ENSMMUG00000029787	LARS	99	64.322	Macaca_mulatta
ENSCING00000008535	-	99	62.979	ENSMNEG00000044014	LARS	99	62.979	Macaca_nemestrina
ENSCING00000008535	-	99	64.516	ENSMLEG00000037563	LARS	99	64.516	Mandrillus_leucophaeus
ENSCING00000008535	-	98	64.610	ENSMAMG00000021385	larsb	98	65.296	Mastacembelus_armatus
ENSCING00000008535	-	98	64.391	ENSMZEG00005002662	larsb	98	65.082	Maylandia_zebra
ENSCING00000008535	-	95	66.132	ENSMGAG00000009388	LARS	99	65.865	Meleagris_gallopavo
ENSCING00000008535	-	98	56.384	ENSMAUG00000003063	Lars	99	56.250	Mesocricetus_auratus
ENSCING00000008535	-	98	65.262	ENSMICG00000035589	-	99	65.378	Microcebus_murinus
ENSCING00000008535	-	94	56.166	ENSMICG00000035435	-	96	55.766	Microcebus_murinus
ENSCING00000008535	-	98	64.347	ENSMOCG00000002092	Lars	99	64.464	Microtus_ochrogaster
ENSCING00000008535	-	99	61.623	ENSMMOG00000013802	larsb	99	61.792	Mola_mola
ENSCING00000008535	-	98	61.235	ENSMODG00000010231	LARS	99	61.235	Monodelphis_domestica
ENSCING00000008535	-	98	63.058	ENSMALG00000018444	larsb	98	63.746	Monopterus_albus
ENSCING00000008535	-	98	63.746	MGP_CAROLIEiJ_G0022225	Lars	99	63.636	Mus_caroli
ENSCING00000008535	-	98	63.660	ENSMUSG00000024493	Lars	99	63.551	Mus_musculus
ENSCING00000008535	-	98	63.918	MGP_PahariEiJ_G0018958	Lars	99	63.808	Mus_pahari
ENSCING00000008535	-	98	63.832	MGP_SPRETEiJ_G0023135	Lars	99	63.722	Mus_spretus
ENSCING00000008535	-	99	64.601	ENSMPUG00000007844	LARS	99	64.801	Mustela_putorius_furo
ENSCING00000008535	-	98	64.716	ENSMLUG00000001125	LARS	99	64.716	Myotis_lucifugus
ENSCING00000008535	-	98	64.580	ENSNGAG00000011596	Lars	99	64.580	Nannospalax_galili
ENSCING00000008535	-	98	64.391	ENSNBRG00000005764	larsb	98	65.082	Neolamprologus_brichardi
ENSCING00000008535	-	99	64.177	ENSNLEG00000009816	LARS	99	64.153	Nomascus_leucogenys
ENSCING00000008535	-	77	69.730	ENSOPRG00000003076	LARS	82	69.730	Ochotona_princeps
ENSCING00000008535	-	98	62.823	ENSODEG00000004882	LARS	99	62.823	Octodon_degus
ENSCING00000008535	-	98	64.439	ENSONIG00000008493	larsb	98	65.124	Oreochromis_niloticus
ENSCING00000008535	-	98	63.784	ENSOANG00000005755	LARS	99	63.784	Ornithorhynchus_anatinus
ENSCING00000008535	-	98	65.523	ENSOCUG00000015684	LARS	99	65.523	Oryctolagus_cuniculus
ENSCING00000008535	-	98	63.870	ENSORLG00000001622	larsb	98	64.555	Oryzias_latipes
ENSCING00000008535	-	98	63.870	ENSORLG00020019950	larsb	98	65.126	Oryzias_latipes_hni
ENSCING00000008535	-	98	63.870	ENSORLG00015003895	larsb	98	64.555	Oryzias_latipes_hsok
ENSCING00000008535	-	98	63.644	ENSOMEG00000005677	larsb	99	64.140	Oryzias_melastigma
ENSCING00000008535	-	95	63.354	ENSOGAG00000008750	LARS	99	63.354	Otolemur_garnettii
ENSCING00000008535	-	98	65.923	ENSOARG00000015911	-	98	66.038	Ovis_aries
ENSCING00000008535	-	98	66.065	ENSOARG00000002454	-	99	66.180	Ovis_aries
ENSCING00000008535	-	99	64.298	ENSPPAG00000027964	LARS	100	64.298	Pan_paniscus
ENSCING00000008535	-	99	64.516	ENSPPRG00000023492	LARS	99	64.631	Panthera_pardus
ENSCING00000008535	-	99	64.516	ENSPTIG00000013110	LARS	99	64.631	Panthera_tigris_altaica
ENSCING00000008535	-	99	64.407	ENSPTRG00000017372	LARS	100	64.298	Pan_troglodytes
ENSCING00000008535	-	99	64.516	ENSPANG00000002663	LARS	99	64.516	Papio_anubis
ENSCING00000008535	-	97	63.628	ENSPKIG00000006650	larsb	98	62.414	Paramormyrops_kingsleyae
ENSCING00000008535	-	99	63.466	ENSPSIG00000015641	LARS	99	63.551	Pelodiscus_sinensis
ENSCING00000008535	-	68	63.806	ENSPMGG00000019556	LARS	100	63.806	Periophthalmus_magnuspinnatus
ENSCING00000008535	-	98	61.426	ENSPEMG00000010933	Lars	99	61.440	Peromyscus_maniculatus_bairdii
ENSCING00000008535	-	98	64.635	ENSPCIG00000030572	LARS	99	64.635	Phascolarctos_cinereus
ENSCING00000008535	-	99	63.153	ENSPFOG00000002361	larsb	99	63.828	Poecilia_formosa
ENSCING00000008535	-	99	63.238	ENSPLAG00000016550	larsb	99	63.912	Poecilia_latipinna
ENSCING00000008535	-	99	63.238	ENSPMEG00000018422	larsb	99	63.912	Poecilia_mexicana
ENSCING00000008535	-	99	63.406	ENSPREG00000005668	larsb	99	63.912	Poecilia_reticulata
ENSCING00000008535	-	98	63.590	ENSPPYG00000015908	LARS	96	63.706	Pongo_abelii
ENSCING00000008535	-	85	54.356	ENSPCAG00000005621	LARS	96	55.050	Procavia_capensis
ENSCING00000008535	-	98	64.261	ENSPCOG00000019325	LARS	99	64.378	Propithecus_coquereli
ENSCING00000008535	-	94	59.156	ENSPVAG00000011237	LARS	98	59.229	Pteropus_vampyrus
ENSCING00000008535	-	98	65.086	ENSPNYG00000015254	larsb	98	65.086	Pundamilia_nyererei
ENSCING00000008535	-	99	62.765	ENSPNAG00000027191	larsb	99	62.765	Pygocentrus_nattereri
ENSCING00000008535	-	98	63.574	ENSRNOG00000018304	Lars	99	63.636	Rattus_norvegicus
ENSCING00000008535	-	94	64.202	ENSRBIG00000043198	LARS	99	64.324	Rhinopithecus_bieti
ENSCING00000008535	-	89	43.403	YPL160W	CDC60	99	43.625	Saccharomyces_cerevisiae
ENSCING00000008535	-	99	61.905	ENSSBOG00000026661	LARS	100	64.621	Saimiri_boliviensis_boliviensis
ENSCING00000008535	-	98	65.266	ENSSHAG00000006084	LARS	99	65.266	Sarcophilus_harrisii
ENSCING00000008535	-	96	64.960	ENSSFOG00015018117	larsb	90	64.960	Scleropages_formosus
ENSCING00000008535	-	87	66.762	ENSSMAG00000004078	larsb	97	66.762	Scophthalmus_maximus
ENSCING00000008535	-	98	64.353	ENSSDUG00000021142	larsb	98	65.039	Seriola_dumerili
ENSCING00000008535	-	98	64.439	ENSSLDG00000007054	larsb	98	65.124	Seriola_lalandi_dorsalis
ENSCING00000008535	-	83	64.286	ENSSARG00000013481	LARS	83	68.217	Sorex_araneus
ENSCING00000008535	-	98	64.721	ENSSPUG00000013805	LARS	98	64.721	Sphenodon_punctatus
ENSCING00000008535	-	99	63.406	ENSSPAG00000012124	larsb	99	64.081	Stegastes_partitus
ENSCING00000008535	-	98	63.081	ENSSSCG00000014411	LARS	99	63.004	Sus_scrofa
ENSCING00000008535	-	99	64.051	ENSTGUG00000000092	-	99	63.797	Taeniopygia_guttata
ENSCING00000008535	-	99	62.816	ENSTRUG00000005358	larsb	99	63.322	Takifugu_rubripes
ENSCING00000008535	-	99	61.402	ENSTNIG00000018214	larsb	99	61.402	Tetraodon_nigroviridis
ENSCING00000008535	-	95	55.049	ENSTBEG00000003757	LARS	99	55.129	Tupaia_belangeri
ENSCING00000008535	-	95	63.782	ENSTTRG00000016712	LARS	95	63.782	Tursiops_truncatus
ENSCING00000008535	-	94	66.187	ENSUAMG00000019907	LARS	99	66.307	Ursus_americanus
ENSCING00000008535	-	99	64.776	ENSUMAG00000010585	LARS	99	64.890	Ursus_maritimus
ENSCING00000008535	-	90	64.887	ENSVPAG00000000557	LARS	91	65.164	Vicugna_pacos
ENSCING00000008535	-	99	64.546	ENSVVUG00000021124	LARS	99	64.546	Vulpes_vulpes
ENSCING00000008535	-	98	64.065	ENSXETG00000002320	lars	98	63.808	Xenopus_tropicalis
ENSCING00000008535	-	99	63.744	ENSXMAG00000001454	larsb	99	63.744	Xiphophorus_maculatus