EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008548 (Gene tree)
Gene ID: 100184370
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 7740 bases
Position: chr3:6368587-6376326
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000035170	Methyltr_RsmB-F	PF01189.17	1.8e-74	1	1
ENSCINP00000017430	Methyltr_RsmB-F	PF01189.17	2.1e-74	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000017430	-	2191	-	ENSCINP00000017430	586 (aa)	-	F6XQ45
ENSCINT00000035930	-	2046	-	ENSCINP00000035170	682 (aa)	-	H2XZT6

Gene Model

Click here to download ENSCING00000008548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008548's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008548	-	68	68.939	ENSACIG00000011803	nop2	67	60.772	Amphilophus_citrinellus
ENSCING00000008548	-	66	70.513	ENSAPEG00000011152	nop2	62	64.523	Amphiprion_percula
ENSCING00000008548	-	98	53.377	ENSACAG00000006397	-	84	53.910	Anolis_carolinensis
ENSCING00000008548	-	98	53.038	ENSAMXG00000018985	nop2	63	63.020	Astyanax_mexicanus
ENSCING00000008548	-	87	51.961	WBGene00021073	nol-1	73	58.389	Caenorhabditis_elegans
ENSCING00000008548	-	66	68.622	ENSCHIG00000018560	-	54	63.288	Capra_hircus
ENSCING00000008548	-	74	62.045	ENSTSYG00000006030	-	52	62.045	Carlito_syrichta
ENSCING00000008548	-	67	67.436	ENSCAPG00000011953	-	55	67.436	Cavia_aperea
ENSCING00000008548	-	75	62.247	ENSCPOG00000020690	-	55	62.500	Cavia_porcellus
ENSCING00000008548	-	76	60.087	ENSCLAG00000014440	-	56	61.798	Chinchilla_lanigera
ENSCING00000008548	-	60	71.186	ENSCPBG00000027725	-	76	62.413	Chrysemys_picta_bellii
ENSCING00000008548	-	66	68.380	ENSCANG00000038803	-	62	68.380	Colobus_angolensis_palliatus
ENSCING00000008548	-	68	60.584	ENSCSEG00000020126	nop2	62	57.906	Cynoglossus_semilaevis
ENSCING00000008548	-	67	63.305	ENSCVAG00000001162	nop2	58	64.653	Cyprinodon_variegatus
ENSCING00000008548	-	99	53.234	ENSDARG00000043304	nop2	65	61.066	Danio_rerio
ENSCING00000008548	-	66	68.798	ENSDNOG00000001133	-	54	63.927	Dasypus_novemcinctus
ENSCING00000008548	-	75	58.730	FBgn0033741	CG8545	51	54.825	Drosophila_melanogaster
ENSCING00000008548	-	57	70.958	ENSEBUG00000009820	nop2	61	70.958	Eptatretus_burgeri
ENSCING00000008548	-	66	61.697	ENSEEUG00000011692	-	56	61.697	Erinaceus_europaeus
ENSCING00000008548	-	66	68.974	ENSELUG00000017384	nop2	59	63.409	Esox_lucius
ENSCING00000008548	-	66	68.101	ENSFALG00000004797	-	70	62.670	Ficedula_albicollis
ENSCING00000008548	-	66	68.974	ENSFHEG00000014327	nop2	76	60.543	Fundulus_heteroclitus
ENSCING00000008548	-	66	69.610	ENSGMOG00000011005	nop2	95	64.419	Gadus_morhua
ENSCING00000008548	-	65	68.338	ENSGALG00000037807	-	79	62.884	Gallus_gallus
ENSCING00000008548	-	74	61.098	ENSGACG00000010317	nop2	95	62.243	Gasterosteus_aculeatus
ENSCING00000008548	-	96	54.195	ENSGAGG00000001438	-	67	61.194	Gopherus_agassizii
ENSCING00000008548	-	66	58.690	ENSHBUG00000014908	nop2	59	53.982	Haplochromis_burtoni
ENSCING00000008548	-	99	50.318	ENSHCOG00000017852	nop2	59	61.419	Hippocampus_comes
ENSCING00000008548	-	99	53.809	ENSIPUG00000008198	nop2	67	60.816	Ictalurus_punctatus
ENSCING00000008548	-	74	64.302	ENSLBEG00000007281	nop2	61	64.773	Labrus_bergylta
ENSCING00000008548	-	58	67.647	ENSLOCG00000007050	nop2	70	61.224	Lepisosteus_oculatus
ENSCING00000008548	-	66	69.487	ENSMAMG00000001909	nop2	58	63.758	Mastacembelus_armatus
ENSCING00000008548	-	66	68.380	ENSMZEG00005017552	nop2	62	62.115	Maylandia_zebra
ENSCING00000008548	-	76	62.693	ENSMGAG00000014082	-	93	63.678	Meleagris_gallopavo
ENSCING00000008548	-	66	64.267	ENSMICG00000006570	-	51	60.185	Microcebus_murinus
ENSCING00000008548	-	76	60.793	ENSMOCG00000017237	Nop2	55	62.415	Microtus_ochrogaster
ENSCING00000008548	-	66	68.514	ENSMODG00000018077	-	61	63.739	Monodelphis_domestica
ENSCING00000008548	-	77	60.714	ENSMUSG00000038279	Nop2	55	63.699	Mus_musculus
ENSCING00000008548	-	74	62.980	ENSMLUG00000014333	-	51	62.980	Myotis_lucifugus
ENSCING00000008548	-	76	61.758	ENSNGAG00000019010	Nop2	72	53.445	Nannospalax_galili
ENSCING00000008548	-	66	61.990	ENSNBRG00000001113	nop2	58	57.692	Neolamprologus_brichardi
ENSCING00000008548	-	57	68.638	ENSNLEG00000004242	-	62	68.528	Nomascus_leucogenys
ENSCING00000008548	-	76	63.319	ENSMEUG00000015287	-	65	64.368	Notamacropus_eugenii
ENSCING00000008548	-	66	62.791	ENSOPRG00000003412	-	52	58.124	Ochotona_princeps
ENSCING00000008548	-	66	68.542	ENSONIG00000012896	nop2	80	53.504	Oreochromis_niloticus
ENSCING00000008548	-	99	52.960	ENSORLG00020005484	nop2	61	62.741	Oryzias_latipes_hni
ENSCING00000008548	-	66	59.698	ENSOMEG00000012751	nop2	59	59.698	Oryzias_melastigma
ENSCING00000008548	-	98	47.783	ENSOARG00000007641	-	53	63.719	Ovis_aries
ENSCING00000008548	-	66	69.388	ENSPTIG00000020543	-	52	65.217	Panthera_tigris_altaica
ENSCING00000008548	-	77	60.086	ENSPANG00000024426	-	62	68.462	Papio_anubis
ENSCING00000008548	-	96	53.716	ENSPSIG00000016127	-	66	67.595	Pelodiscus_sinensis
ENSCING00000008548	-	66	68.462	ENSPEMG00000013138	Nop2	54	63.991	Peromyscus_maniculatus_bairdii
ENSCING00000008548	-	67	67.602	ENSPMAG00000009402	nop2	98	67.602	Petromyzon_marinus
ENSCING00000008548	-	88	51.613	ENSPCIG00000001788	-	58	62.132	Phascolarctos_cinereus
ENSCING00000008548	-	98	53.068	ENSPFOG00000013054	nop2	61	64.747	Poecilia_formosa
ENSCING00000008548	-	68	68.395	ENSPLAG00000005975	nop2	80	55.392	Poecilia_latipinna
ENSCING00000008548	-	68	62.156	ENSPMEG00000016775	nop2	57	64.189	Poecilia_mexicana
ENSCING00000008548	-	61	72.472	ENSPREG00000010428	nop2	58	66.917	Poecilia_reticulata
ENSCING00000008548	-	66	67.866	ENSPCAG00000007033	-	50	62.529	Procavia_capensis
ENSCING00000008548	-	100	52.537	ENSPNAG00000019880	nop2	59	63.311	Pygocentrus_nattereri
ENSCING00000008548	-	77	62.121	ENSRNOG00000018453	Nop2	56	63.594	Rattus_norvegicus
ENSCING00000008548	-	66	68.638	ENSRROG00000041019	-	62	68.638	Rhinopithecus_roxellana
ENSCING00000008548	-	61	58.146	YNL061W	NOP2	68	51.887	Saccharomyces_cerevisiae
ENSCING00000008548	-	66	69.251	ENSSHAG00000015028	-	69	64.220	Sarcophilus_harrisii
ENSCING00000008548	-	98	49.631	ENSSFOG00015002458	nop2	87	50.617	Scleropages_formosus
ENSCING00000008548	-	66	68.462	ENSSMAG00000011738	nop2	55	64.203	Scophthalmus_maximus
ENSCING00000008548	-	53	70.629	ENSSARG00000004520	-	56	70.629	Sorex_araneus
ENSCING00000008548	-	68	66.995	ENSSPUG00000015240	-	61	66.995	Sphenodon_punctatus
ENSCING00000008548	-	66	68.895	ENSSSCG00000000696	-	63	64.368	Sus_scrofa
ENSCING00000008548	-	66	67.700	ENSTGUG00000013336	-	73	63.134	Taeniopygia_guttata
ENSCING00000008548	-	75	57.692	ENSTRUG00000002011	nop2	59	57.753	Takifugu_rubripes
ENSCING00000008548	-	98	53.608	ENSTNIG00000008046	nop2	61	69.054	Tetraodon_nigroviridis
ENSCING00000008548	-	66	68.878	ENSVVUG00000011466	-	51	68.380	Vulpes_vulpes
ENSCING00000008548	-	67	70.380	ENSXMAG00000011483	nop2	59	65.393	Xiphophorus_maculatus