EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008706 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 11444 bases
Position: chrHT000184.1:708999-720442
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000017766	EST1	PF10374.9	1.8e-17	1	1
ENSCINP00000017766	EST1_DNA_bind	PF10373.9	2.6e-32	1	1
ENSCINP00000017766	PIN_4	PF13638.6	6.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000017766	-	3025	-	ENSCINP00000017766	954 (aa)	-	F6WCU4

Gene Model

Click here to download ENSCING00000008706's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008706	-	99	35.113	ENSG00000198952	SMG5	93	35.191	Homo_sapiens
ENSCING00000008706	-	98	32.444	ENSAPOG00000019690	smg5	93	33.683	Acanthochromis_polyacanthus
ENSCING00000008706	-	97	34.778	ENSAMEG00000014458	SMG5	94	35.191	Ailuropoda_melanoleuca
ENSCING00000008706	-	98	32.560	ENSACIG00000001353	smg5	93	33.098	Amphilophus_citrinellus
ENSCING00000008706	-	97	31.153	ENSAOCG00000019483	smg5	90	32.842	Amphiprion_ocellaris
ENSCING00000008706	-	97	31.153	ENSAPEG00000022949	smg5	92	32.842	Amphiprion_percula
ENSCING00000008706	-	91	38.653	ENSATEG00000005348	smg5	93	33.980	Anabas_testudineus
ENSCING00000008706	-	99	34.778	ENSANAG00000032899	SMG5	93	34.881	Aotus_nancymaae
ENSCING00000008706	-	90	37.811	ENSACLG00000009311	smg5	93	33.129	Astatotilapia_calliptera
ENSCING00000008706	-	84	38.636	ENSAMXG00000024616	smg5	77	38.636	Astyanax_mexicanus
ENSCING00000008706	-	99	35.421	ENSBTAG00000009435	SMG5	93	35.397	Bos_taurus
ENSCING00000008706	-	99	34.778	ENSCJAG00000005684	SMG5	95	34.901	Callithrix_jacchus
ENSCING00000008706	-	99	34.116	ENSCAFG00000016839	SMG5	93	34.809	Canis_familiaris
ENSCING00000008706	-	99	34.116	ENSCAFG00020006061	SMG5	93	34.809	Canis_lupus_dingo
ENSCING00000008706	-	99	34.497	ENSCHIG00000007709	SMG5	93	34.881	Capra_hircus
ENSCING00000008706	-	99	34.545	ENSTSYG00000004099	SMG5	94	35.000	Carlito_syrichta
ENSCING00000008706	-	99	34.553	ENSCPOG00000015696	SMG5	94	35.193	Cavia_porcellus
ENSCING00000008706	-	99	35.077	ENSCCAG00000027409	SMG5	93	35.077	Cebus_capucinus
ENSCING00000008706	-	99	35.077	ENSCATG00000030539	SMG5	93	35.088	Cercocebus_atys
ENSCING00000008706	-	99	34.324	ENSCLAG00000003983	SMG5	93	35.487	Chinchilla_lanigera
ENSCING00000008706	-	99	35.077	ENSCSAG00000002120	SMG5	93	35.088	Chlorocebus_sabaeus
ENSCING00000008706	-	58	36.559	ENSCHOG00000008741	-	56	36.559	Choloepus_hoffmanni
ENSCING00000008706	-	99	34.872	ENSCANG00000029208	SMG5	93	34.778	Colobus_angolensis_palliatus
ENSCING00000008706	-	99	35.041	ENSCGRG00001006336	Smg5	93	34.836	Cricetulus_griseus_chok1gshd
ENSCING00000008706	-	97	34.751	ENSCGRG00000005111	Smg5	94	34.511	Cricetulus_griseus_crigri
ENSCING00000008706	-	99	32.474	ENSCSEG00000014220	smg5	93	33.264	Cynoglossus_semilaevis
ENSCING00000008706	-	87	32.517	ENSCVAG00000000529	smg5	92	30.394	Cyprinodon_variegatus
ENSCING00000008706	-	84	38.636	ENSDARG00000041481	smg5	78	38.636	Danio_rerio
ENSCING00000008706	-	99	34.458	ENSDNOG00000000051	SMG5	93	34.391	Dasypus_novemcinctus
ENSCING00000008706	-	99	34.760	ENSDORG00000010382	Smg5	94	34.729	Dipodomys_ordii
ENSCING00000008706	-	73	58.654	ENSETEG00000010336	SMG5	78	58.654	Echinops_telfairi
ENSCING00000008706	-	99	35.216	ENSEASG00005019122	SMG5	93	35.088	Equus_asinus_asinus
ENSCING00000008706	-	99	35.216	ENSECAG00000001389	SMG5	93	34.881	Equus_caballus
ENSCING00000008706	-	70	38.720	ENSEEUG00000012690	SMG5	66	38.720	Erinaceus_europaeus
ENSCING00000008706	-	93	38.847	ENSELUG00000012585	smg5	93	32.819	Esox_lucius
ENSCING00000008706	-	99	34.012	ENSFCAG00000011783	SMG5	93	34.635	Felis_catus
ENSCING00000008706	-	57	34.896	ENSFALG00000001166	-	95	34.602	Ficedula_albicollis
ENSCING00000008706	-	97	34.304	ENSFDAG00000017388	SMG5	94	35.036	Fukomys_damarensis
ENSCING00000008706	-	82	40.000	ENSFHEG00000013939	smg5	85	40.000	Fundulus_heteroclitus
ENSCING00000008706	-	74	38.924	ENSGMOG00000007310	smg5	74	37.198	Gadus_morhua
ENSCING00000008706	-	98	33.699	ENSGALG00000029918	-	94	33.465	Gallus_gallus
ENSCING00000008706	-	67	39.184	ENSGAFG00000021691	smg5	76	38.060	Gambusia_affinis
ENSCING00000008706	-	92	38.424	ENSGACG00000013142	smg5	76	38.424	Gasterosteus_aculeatus
ENSCING00000008706	-	99	34.881	ENSGGOG00000010932	SMG5	93	35.088	Gorilla_gorilla
ENSCING00000008706	-	89	37.811	ENSHBUG00000008654	smg5	75	37.811	Haplochromis_burtoni
ENSCING00000008706	-	99	34.553	ENSHGLG00000019152	SMG5	94	34.760	Heterocephalus_glaber_female
ENSCING00000008706	-	94	34.222	ENSHGLG00100015948	SMG5	99	34.439	Heterocephalus_glaber_male
ENSCING00000008706	-	69	36.203	ENSHCOG00000010229	smg5	70	36.203	Hippocampus_comes
ENSCING00000008706	-	84	39.141	ENSIPUG00000006624	Smg5	77	39.141	Ictalurus_punctatus
ENSCING00000008706	-	99	35.010	ENSSTOG00000001780	SMG5	93	35.294	Ictidomys_tridecemlineatus
ENSCING00000008706	-	99	34.619	ENSJJAG00000022763	Smg5	94	34.592	Jaculus_jaculus
ENSCING00000008706	-	84	38.060	ENSKMAG00000014586	smg5	73	38.060	Kryptolebias_marmoratus
ENSCING00000008706	-	98	33.299	ENSLBEG00000002145	smg5	92	33.438	Labrus_bergylta
ENSCING00000008706	-	89	38.847	ENSLOCG00000008380	smg5	77	38.847	Lepisosteus_oculatus
ENSCING00000008706	-	100	34.381	ENSLAFG00000006241	SMG5	94	34.646	Loxodonta_africana
ENSCING00000008706	-	98	35.118	ENSMFAG00000045357	SMG5	93	35.130	Macaca_fascicularis
ENSCING00000008706	-	98	35.118	ENSMMUG00000000090	SMG5	93	35.130	Macaca_mulatta
ENSCING00000008706	-	98	35.221	ENSMNEG00000044425	SMG5	93	35.233	Macaca_nemestrina
ENSCING00000008706	-	99	31.971	ENSMLEG00000041192	SMG5	93	31.963	Mandrillus_leucophaeus
ENSCING00000008706	-	91	37.905	ENSMAMG00000010683	smg5	75	37.905	Mastacembelus_armatus
ENSCING00000008706	-	97	32.383	ENSMZEG00005015815	smg5	92	31.954	Maylandia_zebra
ENSCING00000008706	-	99	35.143	ENSMAUG00000010381	Smg5	93	34.939	Mesocricetus_auratus
ENSCING00000008706	-	99	34.711	ENSMICG00000002257	SMG5	93	34.881	Microcebus_murinus
ENSCING00000008706	-	99	34.420	ENSMOCG00000016590	Smg5	93	34.939	Microtus_ochrogaster
ENSCING00000008706	-	84	35.910	ENSMMOG00000017199	smg5	75	35.910	Mola_mola
ENSCING00000008706	-	50	40.187	ENSMODG00000004532	-	57	34.028	Monodelphis_domestica
ENSCING00000008706	-	91	32.745	ENSMODG00000016901	SMG5	98	32.166	Monodelphis_domestica
ENSCING00000008706	-	91	37.562	ENSMALG00000010375	smg5	75	37.562	Monopterus_albus
ENSCING00000008706	-	99	34.769	MGP_CAROLIEiJ_G0025163	Smg5	100	43.646	Mus_caroli
ENSCING00000008706	-	99	34.939	ENSMUSG00000001415	Smg5	99	43.646	Mus_musculus
ENSCING00000008706	-	99	34.867	MGP_PahariEiJ_G0026606	Smg5	100	43.646	Mus_pahari
ENSCING00000008706	-	99	34.836	MGP_SPRETEiJ_G0026104	Smg5	100	43.646	Mus_spretus
ENSCING00000008706	-	93	34.528	ENSMPUG00000004546	SMG5	94	34.168	Mustela_putorius_furo
ENSCING00000008706	-	99	34.254	ENSMLUG00000008518	SMG5	94	34.765	Myotis_lucifugus
ENSCING00000008706	-	99	34.327	ENSNGAG00000020706	Smg5	93	34.607	Nannospalax_galili
ENSCING00000008706	-	79	32.673	ENSNGAG00000012101	-	76	32.673	Nannospalax_galili
ENSCING00000008706	-	98	32.169	ENSNBRG00000004332	smg5	94	33.574	Neolamprologus_brichardi
ENSCING00000008706	-	99	35.149	ENSNLEG00000012439	SMG5	93	35.227	Nomascus_leucogenys
ENSCING00000008706	-	99	33.570	ENSMEUG00000012834	SMG5	94	33.469	Notamacropus_eugenii
ENSCING00000008706	-	99	35.031	ENSOPRG00000009152	SMG5	93	34.394	Ochotona_princeps
ENSCING00000008706	-	99	34.504	ENSODEG00000012237	SMG5	93	35.010	Octodon_degus
ENSCING00000008706	-	83	37.811	ENSONIG00000008632	smg5	75	37.811	Oreochromis_niloticus
ENSCING00000008706	-	97	34.995	ENSOCUG00000012886	SMG5	94	34.755	Oryctolagus_cuniculus
ENSCING00000008706	-	84	37.717	ENSORLG00000016239	smg5	74	37.965	Oryzias_latipes
ENSCING00000008706	-	84	37.717	ENSORLG00020013127	smg5	93	32.570	Oryzias_latipes_hni
ENSCING00000008706	-	84	37.717	ENSORLG00015019014	smg5	92	32.919	Oryzias_latipes_hsok
ENSCING00000008706	-	71	38.250	ENSOMEG00000021330	smg5	89	30.017	Oryzias_melastigma
ENSCING00000008706	-	99	34.318	ENSOGAG00000004966	SMG5	93	34.631	Otolemur_garnettii
ENSCING00000008706	-	99	34.394	ENSOARG00000005778	SMG5	93	34.778	Ovis_aries
ENSCING00000008706	-	99	35.216	ENSPPAG00000011996	SMG5	93	35.191	Pan_paniscus
ENSCING00000008706	-	97	34.202	ENSPPRG00000011901	SMG5	94	34.202	Panthera_pardus
ENSCING00000008706	-	97	32.531	ENSPTIG00000007892	SMG5	93	32.984	Panthera_tigris_altaica
ENSCING00000008706	-	99	35.216	ENSPTRG00000049282	-	93	35.191	Pan_troglodytes
ENSCING00000008706	-	99	35.216	ENSPTRG00000023925	SMG5	93	35.191	Pan_troglodytes
ENSCING00000008706	-	99	35.077	ENSPANG00000011201	SMG5	93	35.088	Papio_anubis
ENSCING00000008706	-	98	32.472	ENSPKIG00000009402	smg5	93	33.299	Paramormyrops_kingsleyae
ENSCING00000008706	-	97	34.058	ENSPSIG00000015198	SMG5	94	33.954	Pelodiscus_sinensis
ENSCING00000008706	-	98	30.747	ENSPMGG00000010465	smg5	75	38.500	Periophthalmus_magnuspinnatus
ENSCING00000008706	-	99	35.000	ENSPEMG00000001819	Smg5	93	35.246	Peromyscus_maniculatus_bairdii
ENSCING00000008706	-	99	34.619	ENSPCIG00000018938	SMG5	94	34.677	Phascolarctos_cinereus
ENSCING00000008706	-	83	38.060	ENSPFOG00000010191	smg5	72	38.060	Poecilia_formosa
ENSCING00000008706	-	83	38.060	ENSPLAG00000009332	smg5	72	38.060	Poecilia_latipinna
ENSCING00000008706	-	83	38.060	ENSPMEG00000014105	smg5	72	38.060	Poecilia_mexicana
ENSCING00000008706	-	83	38.060	ENSPREG00000017713	smg5	77	38.060	Poecilia_reticulata
ENSCING00000008706	-	99	35.010	ENSPPYG00000000723	SMG5	93	35.088	Pongo_abelii
ENSCING00000008706	-	77	44.503	ENSPCAG00000008412	SMG5	79	44.503	Procavia_capensis
ENSCING00000008706	-	99	34.469	ENSPCOG00000004741	SMG5	93	34.742	Propithecus_coquereli
ENSCING00000008706	-	92	53.191	ENSPVAG00000016748	SMG5	87	53.191	Pteropus_vampyrus
ENSCING00000008706	-	89	37.811	ENSPNYG00000013397	smg5	75	37.811	Pundamilia_nyererei
ENSCING00000008706	-	83	38.889	ENSPNAG00000028363	smg5	73	38.889	Pygocentrus_nattereri
ENSCING00000008706	-	99	34.497	ENSRNOG00000019590	Smg5	93	34.497	Rattus_norvegicus
ENSCING00000008706	-	99	35.282	ENSRBIG00000027428	SMG5	93	35.191	Rhinopithecus_bieti
ENSCING00000008706	-	99	35.179	ENSRROG00000030035	SMG5	93	35.088	Rhinopithecus_roxellana
ENSCING00000008706	-	99	34.600	ENSSBOG00000033339	SMG5	93	34.778	Saimiri_boliviensis_boliviensis
ENSCING00000008706	-	97	34.365	ENSSHAG00000014163	SMG5	94	34.436	Sarcophilus_harrisii
ENSCING00000008706	-	99	33.197	ENSSFOG00015024175	smg5	93	33.811	Scleropages_formosus
ENSCING00000008706	-	83	39.055	ENSSMAG00000013059	smg5	75	38.806	Scophthalmus_maximus
ENSCING00000008706	-	84	37.685	ENSSDUG00000007122	smg5	75	37.685	Seriola_dumerili
ENSCING00000008706	-	84	38.308	ENSSLDG00000011418	smg5	87	31.285	Seriola_lalandi_dorsalis
ENSCING00000008706	-	87	37.591	ENSSARG00000012484	SMG5	92	37.591	Sorex_araneus
ENSCING00000008706	-	92	32.244	ENSSPUG00000002260	SMG5	94	32.700	Sphenodon_punctatus
ENSCING00000008706	-	98	32.190	ENSSPAG00000014266	smg5	92	32.861	Stegastes_partitus
ENSCING00000008706	-	87	52.667	ENSSSCG00000006490	-	91	52.667	Sus_scrofa
ENSCING00000008706	-	98	34.086	ENSTGUG00000003748	-	93	33.367	Taeniopygia_guttata
ENSCING00000008706	-	98	33.300	ENSTRUG00000012580	smg5	92	33.300	Takifugu_rubripes
ENSCING00000008706	-	98	33.704	ENSTNIG00000010303	smg5	93	33.976	Tetraodon_nigroviridis
ENSCING00000008706	-	56	38.906	ENSTBEG00000002777	SMG5	50	38.906	Tupaia_belangeri
ENSCING00000008706	-	99	32.136	ENSTTRG00000001401	SMG5	93	32.508	Tursiops_truncatus
ENSCING00000008706	-	99	34.836	ENSUAMG00000013721	SMG5	94	35.107	Ursus_americanus
ENSCING00000008706	-	97	33.787	ENSUMAG00000018041	SMG5	92	33.753	Ursus_maritimus
ENSCING00000008706	-	85	52.667	ENSVPAG00000009446	SMG5	88	52.667	Vicugna_pacos
ENSCING00000008706	-	99	34.675	ENSVVUG00000005887	SMG5	93	34.706	Vulpes_vulpes
ENSCING00000008706	-	54	49.600	ENSXCOG00000004379	smg5	57	49.600	Xiphophorus_couchianus
ENSCING00000008706	-	83	38.060	ENSXMAG00000013499	smg5	93	33.367	Xiphophorus_maculatus