EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008817 (Gene tree)
Gene ID: 100176856
Gene Symbol: -
Alias: -
Full Name: pre-mRNA-processing factor 6
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 9811 bases
Position: chr7:4765820-4775630
Accession: 100176856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000017945	PRP1_N	PF06424.12	7.9e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000017945	-	2938	XM_002128736	ENSCINP00000017945	956 (aa)	XP_002128772	F7BJA3

Gene Model

Click here to download ENSCING00000008817's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008817's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008817	-	99	73.044	ENSG00000101161	PRPF6	99	73.044	Homo_sapiens
ENSCING00000008817	-	99	72.199	ENSAPOG00000010395	prpf6	96	72.622	Acanthochromis_polyacanthus
ENSCING00000008817	-	99	72.670	ENSAMEG00000001916	PRPF6	99	72.670	Ailuropoda_melanoleuca
ENSCING00000008817	-	99	72.516	ENSACIG00000019862	prpf6	96	72.939	Amphilophus_citrinellus
ENSCING00000008817	-	99	72.304	ENSAOCG00000012988	prpf6	96	72.727	Amphiprion_ocellaris
ENSCING00000008817	-	99	67.548	ENSAPEG00000008301	prpf6	99	67.970	Amphiprion_percula
ENSCING00000008817	-	99	72.199	ENSATEG00000005581	prpf6	96	72.622	Anabas_testudineus
ENSCING00000008817	-	99	73.326	ENSACAG00000006464	PRPF6	96	73.326	Anolis_carolinensis
ENSCING00000008817	-	99	73.150	ENSANAG00000012661	PRPF6	99	73.653	Aotus_nancymaae
ENSCING00000008817	-	99	72.199	ENSACLG00000025875	prpf6	96	72.622	Astatotilapia_calliptera
ENSCING00000008817	-	99	72.775	ENSAMXG00000001929	prpf6	97	73.194	Astyanax_mexicanus
ENSCING00000008817	-	99	73.890	ENSBTAG00000011656	PRPF6	99	73.890	Bos_taurus
ENSCING00000008817	-	99	73.150	ENSCJAG00000010616	PRPF6	99	73.150	Callithrix_jacchus
ENSCING00000008817	-	99	73.784	ENSCAFG00000013165	PRPF6	99	73.784	Canis_familiaris
ENSCING00000008817	-	99	73.784	ENSCAFG00020002050	PRPF6	99	73.784	Canis_lupus_dingo
ENSCING00000008817	-	99	73.890	ENSCHIG00000018187	PRPF6	99	73.890	Capra_hircus
ENSCING00000008817	-	99	73.467	ENSTSYG00000007814	PRPF6	99	73.467	Carlito_syrichta
ENSCING00000008817	-	97	72.619	ENSCAPG00000015077	PRPF6	100	72.294	Cavia_aperea
ENSCING00000008817	-	99	73.573	ENSCPOG00000007518	PRPF6	99	73.573	Cavia_porcellus
ENSCING00000008817	-	99	69.979	ENSCCAG00000024564	PRPF6	99	70.085	Cebus_capucinus
ENSCING00000008817	-	99	73.044	ENSCATG00000037473	PRPF6	99	73.044	Cercocebus_atys
ENSCING00000008817	-	99	70.930	ENSCLAG00000003854	PRPF6	99	70.930	Chinchilla_lanigera
ENSCING00000008817	-	99	70.964	ENSCSAG00000016742	PRPF6	99	70.964	Chlorocebus_sabaeus
ENSCING00000008817	-	83	59.486	ENSCHOG00000003315	-	98	59.473	Choloepus_hoffmanni
ENSCING00000008817	-	99	73.640	ENSCPBG00000013964	PRPF6	97	73.640	Chrysemys_picta_bellii
ENSCING00000008817	-	99	73.044	ENSCANG00000038230	PRPF6	99	73.044	Colobus_angolensis_palliatus
ENSCING00000008817	-	99	73.573	ENSCGRG00001022666	Prpf6	99	73.573	Cricetulus_griseus_chok1gshd
ENSCING00000008817	-	99	69.968	ENSCSEG00000018561	prpf6	99	70.179	Cynoglossus_semilaevis
ENSCING00000008817	-	99	71.987	ENSCVAG00000010550	prpf6	96	72.410	Cyprinodon_variegatus
ENSCING00000008817	-	99	73.228	ENSDARG00000091367	prpf6	99	73.651	Danio_rerio
ENSCING00000008817	-	99	74.207	ENSDNOG00000040544	PRPF6	99	74.207	Dasypus_novemcinctus
ENSCING00000008817	-	90	73.581	ENSDORG00000005406	Prpf6	100	73.581	Dipodomys_ordii
ENSCING00000008817	-	99	65.823	FBgn0036828	CG6841	99	65.933	Drosophila_melanogaster
ENSCING00000008817	-	84	74.385	ENSETEG00000004447	PRPF6	84	74.385	Echinops_telfairi
ENSCING00000008817	-	99	72.497	ENSEBUG00000008835	prpf6	99	72.497	Eptatretus_burgeri
ENSCING00000008817	-	99	73.890	ENSEASG00005023115	PRPF6	99	73.890	Equus_asinus_asinus
ENSCING00000008817	-	99	70.402	ENSECAG00000013983	PRPF6	99	70.402	Equus_caballus
ENSCING00000008817	-	87	82.051	ENSEEUG00000000180	PRPF6	72	82.051	Erinaceus_europaeus
ENSCING00000008817	-	99	72.516	ENSELUG00000001945	prpf6	93	72.516	Esox_lucius
ENSCING00000008817	-	99	73.784	ENSFCAG00000001183	PRPF6	99	73.784	Felis_catus
ENSCING00000008817	-	99	69.418	ENSFALG00000006046	-	97	69.418	Ficedula_albicollis
ENSCING00000008817	-	99	73.996	ENSFALG00000010326	-	97	73.996	Ficedula_albicollis
ENSCING00000008817	-	99	72.410	ENSFDAG00000006451	PRPF6	100	72.778	Fukomys_damarensis
ENSCING00000008817	-	99	72.910	ENSFHEG00000000560	prpf6	96	72.910	Fundulus_heteroclitus
ENSCING00000008817	-	99	72.169	ENSGMOG00000015622	prpf6	99	72.169	Gadus_morhua
ENSCING00000008817	-	99	73.996	ENSGALG00000006001	PRPF6	99	73.996	Gallus_gallus
ENSCING00000008817	-	99	68.816	ENSGAFG00000021109	prpf6	96	69.239	Gambusia_affinis
ENSCING00000008817	-	99	72.275	ENSGACG00000002576	prpf6	99	72.275	Gasterosteus_aculeatus
ENSCING00000008817	-	99	73.745	ENSGAGG00000008653	PRPF6	97	73.745	Gopherus_agassizii
ENSCING00000008817	-	99	73.044	ENSGGOG00000016876	PRPF6	99	73.044	Gorilla_gorilla
ENSCING00000008817	-	99	72.199	ENSHBUG00000004496	prpf6	96	72.622	Haplochromis_burtoni
ENSCING00000008817	-	99	73.573	ENSHGLG00000009222	PRPF6	99	73.573	Heterocephalus_glaber_female
ENSCING00000008817	-	97	73.377	ENSHGLG00100016600	PRPF6	100	73.377	Heterocephalus_glaber_male
ENSCING00000008817	-	99	71.987	ENSHCOG00000011513	prpf6	96	72.410	Hippocampus_comes
ENSCING00000008817	-	99	73.016	ENSIPUG00000004912	prpf6	96	73.228	Ictalurus_punctatus
ENSCING00000008817	-	99	72.017	ENSSTOG00000002922	PRPF6	99	71.700	Ictidomys_tridecemlineatus
ENSCING00000008817	-	99	73.679	ENSJJAG00000000836	Prpf6	99	73.679	Jaculus_jaculus
ENSCING00000008817	-	99	72.516	ENSKMAG00000017800	prpf6	96	72.939	Kryptolebias_marmoratus
ENSCING00000008817	-	99	72.093	ENSLBEG00000012582	prpf6	96	72.093	Labrus_bergylta
ENSCING00000008817	-	99	72.803	ENSLOCG00000004827	prpf6	95	72.803	Lepisosteus_oculatus
ENSCING00000008817	-	99	73.573	ENSLAFG00000005272	PRPF6	99	73.573	Loxodonta_africana
ENSCING00000008817	-	99	73.044	ENSMFAG00000037542	PRPF6	99	73.044	Macaca_fascicularis
ENSCING00000008817	-	99	68.321	ENSMMUG00000015558	PRPF6	98	73.973	Macaca_mulatta
ENSCING00000008817	-	99	63.252	ENSMNEG00000045555	PRPF6	99	63.252	Macaca_nemestrina
ENSCING00000008817	-	99	72.199	ENSMAMG00000010718	prpf6	96	72.622	Mastacembelus_armatus
ENSCING00000008817	-	99	71.806	ENSMZEG00005015261	-	99	72.228	Maylandia_zebra
ENSCING00000008817	-	91	72.248	ENSMZEG00005026539	prpf6	99	71.864	Maylandia_zebra
ENSCING00000008817	-	97	73.810	ENSMGAG00000006634	PRPF6	100	73.810	Meleagris_gallopavo
ENSCING00000008817	-	99	73.573	ENSMAUG00000013969	Prpf6	99	73.573	Mesocricetus_auratus
ENSCING00000008817	-	87	73.462	ENSMICG00000017793	PRPF6	97	73.678	Microcebus_murinus
ENSCING00000008817	-	99	73.573	ENSMOCG00000001701	Prpf6	99	73.573	Microtus_ochrogaster
ENSCING00000008817	-	99	71.987	ENSMMOG00000020419	prpf6	99	72.410	Mola_mola
ENSCING00000008817	-	96	72.727	ENSMODG00000017051	PRPF6	99	72.727	Monodelphis_domestica
ENSCING00000008817	-	98	72.436	ENSMALG00000000089	prpf6	99	72.436	Monopterus_albus
ENSCING00000008817	-	99	68.499	MGP_CAROLIEiJ_G0024814	Prpf6	99	68.182	Mus_caroli
ENSCING00000008817	-	99	73.573	ENSMUSG00000002455	Prpf6	99	73.573	Mus_musculus
ENSCING00000008817	-	99	73.573	MGP_PahariEiJ_G0026262	Prpf6	99	73.573	Mus_pahari
ENSCING00000008817	-	99	73.573	MGP_SPRETEiJ_G0025741	Prpf6	99	73.573	Mus_spretus
ENSCING00000008817	-	89	74.486	ENSMPUG00000008673	PRPF6	99	73.934	Mustela_putorius_furo
ENSCING00000008817	-	99	73.573	ENSNGAG00000003365	Prpf6	99	73.573	Nannospalax_galili
ENSCING00000008817	-	99	72.304	ENSNBRG00000015025	prpf6	96	72.727	Neolamprologus_brichardi
ENSCING00000008817	-	99	73.044	ENSNLEG00000010208	PRPF6	99	73.044	Nomascus_leucogenys
ENSCING00000008817	-	99	67.257	ENSMEUG00000009824	-	90	67.257	Notamacropus_eugenii
ENSCING00000008817	-	99	69.767	ENSODEG00000004841	PRPF6	99	69.767	Octodon_degus
ENSCING00000008817	-	99	72.410	ENSONIG00000017406	prpf6	96	72.833	Oreochromis_niloticus
ENSCING00000008817	-	99	73.890	ENSOANG00000004920	PRPF6	99	73.890	Ornithorhynchus_anatinus
ENSCING00000008817	-	98	73.056	ENSOCUG00000014151	PRPF6	100	73.056	Oryctolagus_cuniculus
ENSCING00000008817	-	99	71.987	ENSORLG00000009592	prpf6	96	71.987	Oryzias_latipes
ENSCING00000008817	-	99	71.882	ENSORLG00020001458	prpf6	96	71.882	Oryzias_latipes_hni
ENSCING00000008817	-	99	71.882	ENSORLG00015018762	prpf6	96	71.882	Oryzias_latipes_hsok
ENSCING00000008817	-	99	71.882	ENSOMEG00000012174	prpf6	96	72.304	Oryzias_melastigma
ENSCING00000008817	-	99	67.476	ENSOGAG00000007573	PRPF6	99	67.476	Otolemur_garnettii
ENSCING00000008817	-	99	73.166	ENSOARG00000008776	PRPF6	99	73.166	Ovis_aries
ENSCING00000008817	-	99	73.044	ENSPPAG00000008686	PRPF6	99	73.044	Pan_paniscus
ENSCING00000008817	-	99	73.784	ENSPPRG00000008497	PRPF6	99	73.784	Panthera_pardus
ENSCING00000008817	-	97	73.593	ENSPTIG00000011184	PRPF6	97	73.593	Panthera_tigris_altaica
ENSCING00000008817	-	99	73.044	ENSPTRG00000013765	PRPF6	99	73.044	Pan_troglodytes
ENSCING00000008817	-	99	73.150	ENSPANG00000024135	PRPF6	99	73.150	Papio_anubis
ENSCING00000008817	-	99	73.256	ENSPKIG00000005627	prpf6	98	73.256	Paramormyrops_kingsleyae
ENSCING00000008817	-	91	73.968	ENSPSIG00000007717	PRPF6	100	73.341	Pelodiscus_sinensis
ENSCING00000008817	-	99	70.961	ENSPMGG00000008925	prpf6	96	71.067	Periophthalmus_magnuspinnatus
ENSCING00000008817	-	99	73.573	ENSPEMG00000016036	Prpf6	99	73.573	Peromyscus_maniculatus_bairdii
ENSCING00000008817	-	100	72.576	ENSPMAG00000006144	prpf6	100	72.576	Petromyzon_marinus
ENSCING00000008817	-	99	73.890	ENSPCIG00000017909	PRPF6	99	73.890	Phascolarctos_cinereus
ENSCING00000008817	-	99	72.410	ENSPFOG00000006431	prpf6	95	72.833	Poecilia_formosa
ENSCING00000008817	-	99	72.199	ENSPLAG00000005974	prpf6	96	72.622	Poecilia_latipinna
ENSCING00000008817	-	99	72.199	ENSPMEG00000009977	prpf6	96	72.622	Poecilia_mexicana
ENSCING00000008817	-	99	72.093	ENSPREG00000017993	prpf6	91	72.516	Poecilia_reticulata
ENSCING00000008817	-	99	72.622	ENSPPYG00000011256	PRPF6	99	72.622	Pongo_abelii
ENSCING00000008817	-	94	75.283	ENSPCAG00000006536	PRPF6	88	75.283	Procavia_capensis
ENSCING00000008817	-	99	73.679	ENSPCOG00000016881	PRPF6	99	73.679	Propithecus_coquereli
ENSCING00000008817	-	99	69.450	ENSPVAG00000014316	PRPF6	99	69.450	Pteropus_vampyrus
ENSCING00000008817	-	99	57.911	ENSPNYG00000001939	prpf6	95	62.896	Pundamilia_nyererei
ENSCING00000008817	-	99	73.016	ENSPNAG00000015606	prpf6	96	73.439	Pygocentrus_nattereri
ENSCING00000008817	-	99	73.573	ENSRNOG00000051498	Prpf6	99	73.573	Rattus_norvegicus
ENSCING00000008817	-	99	73.044	ENSRBIG00000043613	PRPF6	99	73.044	Rhinopithecus_bieti
ENSCING00000008817	-	99	70.421	ENSRROG00000040969	PRPF6	96	73.693	Rhinopithecus_roxellana
ENSCING00000008817	-	88	70.916	ENSSBOG00000020632	PRPF6	91	70.035	Saimiri_boliviensis_boliviensis
ENSCING00000008817	-	99	73.890	ENSSHAG00000016810	PRPF6	99	73.890	Sarcophilus_harrisii
ENSCING00000008817	-	98	73.825	ENSSFOG00015020859	prpf6	99	73.825	Scleropages_formosus
ENSCING00000008817	-	99	72.410	ENSSMAG00000008112	prpf6	96	72.410	Scophthalmus_maximus
ENSCING00000008817	-	99	72.304	ENSSDUG00000016142	prpf6	96	72.727	Seriola_dumerili
ENSCING00000008817	-	99	72.304	ENSSLDG00000025283	prpf6	99	70.085	Seriola_lalandi_dorsalis
ENSCING00000008817	-	91	72.936	ENSSPUG00000018260	PRPF6	100	72.328	Sphenodon_punctatus
ENSCING00000008817	-	99	72.093	ENSSPAG00000015850	prpf6	96	72.516	Stegastes_partitus
ENSCING00000008817	-	98	74.098	ENSSSCG00000029119	PRPF6	100	73.116	Sus_scrofa
ENSCING00000008817	-	99	74.101	ENSTGUG00000007221	PRPF6	99	74.101	Taeniopygia_guttata
ENSCING00000008817	-	99	72.199	ENSTRUG00000002920	prpf6	96	72.622	Takifugu_rubripes
ENSCING00000008817	-	99	67.122	ENSTNIG00000017873	prpf6	99	67.542	Tetraodon_nigroviridis
ENSCING00000008817	-	87	68.889	ENSTBEG00000005348	PRPF6	85	68.889	Tupaia_belangeri
ENSCING00000008817	-	99	73.362	ENSTTRG00000013068	PRPF6	99	73.362	Tursiops_truncatus
ENSCING00000008817	-	97	72.619	ENSUMAG00000021631	PRPF6	98	72.619	Ursus_maritimus
ENSCING00000008817	-	99	73.784	ENSVVUG00000014948	PRPF6	99	73.784	Vulpes_vulpes
ENSCING00000008817	-	99	72.956	ENSXETG00000012054	prpf6	97	72.956	Xenopus_tropicalis
ENSCING00000008817	-	99	72.304	ENSXCOG00000008082	prpf6	96	72.727	Xiphophorus_couchianus
ENSCING00000008817	-	99	72.304	ENSXMAG00000015581	prpf6	96	72.727	Xiphophorus_maculatus