EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000008954 (Gene tree)
Gene ID: 100175861
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 6755 bases
Position: chr4:864025-870779
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000018178	SRP54	PF00448.22	5.9e-50	1	1
ENSCINP00000024956	SRP54	PF00448.22	6e-50	1	1
ENSCINP00000018178	SRP54_N	PF02881.19	2.5e-10	1	1
ENSCINP00000024956	SRP54_N	PF02881.19	2.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000018178	-	1979	-	ENSCINP00000018178	642 (aa)	-	F6Q601
ENSCINT00000025202	-	1859	-	ENSCINP00000024956	602 (aa)	-	F6UC76

Gene Model

Click here to download ENSCING00000008954's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000008954's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000008954	-	100	59.061	ENSG00000182934	SRPRA	99	59.061	Homo_sapiens
ENSCING00000008954	-	100	56.418	ENSAPOG00000017588	srpra	99	56.930	Acanthochromis_polyacanthus
ENSCING00000008954	-	100	58.473	ENSAMEG00000000117	SRPRA	99	58.168	Ailuropoda_melanoleuca
ENSCING00000008954	-	100	58.065	ENSACIG00000021588	srpra	99	57.604	Amphilophus_citrinellus
ENSCING00000008954	-	100	58.108	ENSAOCG00000018884	srpra	99	58.171	Amphiprion_ocellaris
ENSCING00000008954	-	100	57.508	ENSAPEG00000022286	srpra	99	56.773	Amphiprion_percula
ENSCING00000008954	-	100	56.418	ENSATEG00000023578	srpra	92	77.950	Anabas_testudineus
ENSCING00000008954	-	94	57.327	ENSAPLG00000016079	SRPRA	99	57.818	Anas_platyrhynchos
ENSCING00000008954	-	100	57.271	ENSACAG00000000108	SRPRA	99	56.344	Anolis_carolinensis
ENSCING00000008954	-	100	58.643	ENSANAG00000020346	SRPRA	99	59.128	Aotus_nancymaae
ENSCING00000008954	-	100	58.647	ENSACLG00000000518	srpra	99	58.859	Astatotilapia_calliptera
ENSCING00000008954	-	100	55.573	ENSAMXG00000009975	srpra	99	55.418	Astyanax_mexicanus
ENSCING00000008954	-	100	59.146	ENSBTAG00000014105	SRPRA	99	58.841	Bos_taurus
ENSCING00000008954	-	99	50.765	WBGene00009521	F38A1.8	99	50.460	Caenorhabditis_elegans
ENSCING00000008954	-	100	59.194	ENSCJAG00000008752	SRPRA	99	59.516	Callithrix_jacchus
ENSCING00000008954	-	100	56.947	ENSCAFG00000010474	SRPRA	99	56.641	Canis_familiaris
ENSCING00000008954	-	100	58.321	ENSCAFG00020010608	SRPRA	99	58.015	Canis_lupus_dingo
ENSCING00000008954	-	100	59.299	ENSCHIG00000012423	SRPRA	99	58.994	Capra_hircus
ENSCING00000008954	-	79	72.779	ENSTSYG00000005187	SRPRA	98	72.779	Carlito_syrichta
ENSCING00000008954	-	95	57.329	ENSCAPG00000007098	SRPRA	100	74.830	Cavia_aperea
ENSCING00000008954	-	100	58.779	ENSCPOG00000014976	SRPRA	100	74.830	Cavia_porcellus
ENSCING00000008954	-	100	58.587	ENSCCAG00000025602	SRPRA	99	58.587	Cebus_capucinus
ENSCING00000008954	-	100	59.098	ENSCATG00000039354	SRPRA	99	59.259	Cercocebus_atys
ENSCING00000008954	-	100	58.716	ENSCLAG00000016839	SRPRA	99	58.410	Chinchilla_lanigera
ENSCING00000008954	-	100	58.626	ENSCSAG00000002271	SRPRA	99	58.321	Chlorocebus_sabaeus
ENSCING00000008954	-	100	55.639	ENSCPBG00000011128	SRPRA	99	56.090	Chrysemys_picta_bellii
ENSCING00000008954	-	100	81.649	ENSCSAVG00000005602	-	100	82.326	Ciona_savignyi
ENSCING00000008954	-	100	58.937	ENSCANG00000032337	SRPRA	99	58.900	Colobus_angolensis_palliatus
ENSCING00000008954	-	100	58.869	ENSCGRG00001017670	Srpr	99	58.104	Cricetulus_griseus_chok1gshd
ENSCING00000008954	-	100	58.869	ENSCGRG00000009892	Srpr	90	80.741	Cricetulus_griseus_crigri
ENSCING00000008954	-	100	58.974	ENSCSEG00000002374	srpra	99	58.974	Cynoglossus_semilaevis
ENSCING00000008954	-	100	57.466	ENSCVAG00000019881	srpra	99	58.473	Cyprinodon_variegatus
ENSCING00000008954	-	100	58.752	ENSDARG00000061124	srpra	99	58.499	Danio_rerio
ENSCING00000008954	-	100	57.855	ENSDNOG00000010821	SRPRA	99	57.553	Dasypus_novemcinctus
ENSCING00000008954	-	100	58.716	ENSDORG00000016719	Srpr	99	58.410	Dipodomys_ordii
ENSCING00000008954	-	100	52.315	FBgn0010391	Gtp-bp	100	52.680	Drosophila_melanogaster
ENSCING00000008954	-	100	57.317	ENSETEG00000013956	SRPRA	99	55.738	Echinops_telfairi
ENSCING00000008954	-	53	74.688	ENSEBUG00000002602	srpra	74	74.688	Eptatretus_burgeri
ENSCING00000008954	-	100	58.636	ENSEASG00005022980	SRPRA	99	58.182	Equus_asinus_asinus
ENSCING00000008954	-	100	58.636	ENSECAG00000014692	SRPRA	99	58.182	Equus_caballus
ENSCING00000008954	-	100	54.338	ENSEEUG00000007920	SRPRA	99	54.338	Erinaceus_europaeus
ENSCING00000008954	-	100	58.384	ENSELUG00000017643	srpra	99	57.056	Esox_lucius
ENSCING00000008954	-	100	59.069	ENSFCAG00000011274	-	99	59.069	Felis_catus
ENSCING00000008954	-	80	52.762	ENSFCAG00000030894	-	99	52.381	Felis_catus
ENSCING00000008954	-	99	54.351	ENSFALG00000005048	SRPRA	99	54.630	Ficedula_albicollis
ENSCING00000008954	-	100	58.282	ENSFDAG00000016229	SRPRA	85	81.061	Fukomys_damarensis
ENSCING00000008954	-	100	58.779	ENSFHEG00000016959	srpra	99	58.499	Fundulus_heteroclitus
ENSCING00000008954	-	100	55.927	ENSGMOG00000013244	srpra	99	56.535	Gadus_morhua
ENSCING00000008954	-	100	57.251	ENSGALG00000030759	SRPRA	99	56.863	Gallus_gallus
ENSCING00000008954	-	100	56.832	ENSGAFG00000000453	srpra	83	76.875	Gambusia_affinis
ENSCING00000008954	-	100	56.992	ENSGACG00000006550	srpra	99	57.209	Gasterosteus_aculeatus
ENSCING00000008954	-	100	56.119	ENSGAGG00000021157	SRPRA	99	56.241	Gopherus_agassizii
ENSCING00000008954	-	100	59.061	ENSGGOG00000012962	SRPRA	99	59.061	Gorilla_gorilla
ENSCING00000008954	-	100	58.496	ENSHBUG00000000119	srpra	99	58.709	Haplochromis_burtoni
ENSCING00000008954	-	100	58.869	ENSHGLG00000001597	SRPR	94	81.061	Heterocephalus_glaber_female
ENSCING00000008954	-	100	58.869	ENSHGLG00100006449	SRPR	94	81.061	Heterocephalus_glaber_male
ENSCING00000008954	-	100	58.207	ENSHCOG00000010749	srpra	99	58.055	Hippocampus_comes
ENSCING00000008954	-	94	56.726	ENSIPUG00000000867	srpra	99	55.754	Ictalurus_punctatus
ENSCING00000008954	-	100	58.626	ENSSTOG00000009897	SRPRA	99	58.321	Ictidomys_tridecemlineatus
ENSCING00000008954	-	100	58.742	ENSJJAG00000020272	Srpr	99	57.975	Jaculus_jaculus
ENSCING00000008954	-	100	58.689	ENSKMAG00000002280	srpra	99	58.129	Kryptolebias_marmoratus
ENSCING00000008954	-	100	56.992	ENSLBEG00000009608	srpra	99	57.744	Labrus_bergylta
ENSCING00000008954	-	100	57.056	ENSLACG00000017781	SRPRA	99	56.925	Latimeria_chalumnae
ENSCING00000008954	-	100	57.645	ENSLOCG00000002733	srpra	99	57.187	Lepisosteus_oculatus
ENSCING00000008954	-	100	58.079	ENSLAFG00000010252	SRPRA	99	57.855	Loxodonta_africana
ENSCING00000008954	-	100	59.098	ENSMFAG00000032606	SRPRA	99	59.581	Macaca_fascicularis
ENSCING00000008954	-	100	59.098	ENSMMUG00000007938	SRPRA	99	59.581	Macaca_mulatta
ENSCING00000008954	-	100	58.937	ENSMNEG00000030709	SRPRA	99	58.587	Macaca_nemestrina
ENSCING00000008954	-	100	59.098	ENSMLEG00000043404	SRPRA	99	59.259	Mandrillus_leucophaeus
ENSCING00000008954	-	100	58.859	ENSMAMG00000000473	srpra	99	57.640	Mastacembelus_armatus
ENSCING00000008954	-	100	58.647	ENSMZEG00005013432	srpra	99	58.859	Maylandia_zebra
ENSCING00000008954	-	94	56.472	ENSMGAG00000000732	SRPRA	99	56.536	Meleagris_gallopavo
ENSCING00000008954	-	100	59.056	ENSMAUG00000015648	Srpr	99	58.410	Mesocricetus_auratus
ENSCING00000008954	-	100	58.158	ENSMICG00000015981	SRPRA	99	57.997	Microcebus_murinus
ENSCING00000008954	-	100	58.869	ENSMOCG00000008311	Srpr	99	57.951	Microtus_ochrogaster
ENSCING00000008954	-	100	57.863	ENSMMOG00000005019	srpra	99	57.686	Mola_mola
ENSCING00000008954	-	100	58.384	ENSMODG00000004576	-	99	58.346	Monodelphis_domestica
ENSCING00000008954	-	100	57.911	ENSMALG00000011343	srpra	99	57.911	Monopterus_albus
ENSCING00000008954	-	100	58.563	MGP_CAROLIEiJ_G0031951	Srpr	86	81.061	Mus_caroli
ENSCING00000008954	-	100	58.563	ENSMUSG00000032042	Srpr	86	81.061	Mus_musculus
ENSCING00000008954	-	100	58.410	MGP_PahariEiJ_G0014816	Srpr	86	81.061	Mus_pahari
ENSCING00000008954	-	100	56.268	MGP_SPRETEiJ_G0033075	Srpr	85	76.615	Mus_spretus
ENSCING00000008954	-	100	58.168	ENSMPUG00000006626	SRPRA	99	58.473	Mustela_putorius_furo
ENSCING00000008954	-	100	59.265	ENSMLUG00000017334	SRPRA	99	58.499	Myotis_lucifugus
ENSCING00000008954	-	100	58.716	ENSNGAG00000015686	Srpr	99	58.104	Nannospalax_galili
ENSCING00000008954	-	100	58.045	ENSNBRG00000017311	srpra	99	58.258	Neolamprologus_brichardi
ENSCING00000008954	-	99	55.692	ENSNLEG00000007467	SRPRA	99	58.703	Nomascus_leucogenys
ENSCING00000008954	-	94	57.143	ENSMEUG00000004956	SRPRA	99	57.003	Notamacropus_eugenii
ENSCING00000008954	-	100	55.436	ENSOPRG00000013160	SRPRA	99	54.769	Ochotona_princeps
ENSCING00000008954	-	100	59.174	ENSODEG00000004730	SRPRA	99	58.869	Octodon_degus
ENSCING00000008954	-	100	59.327	ENSONIG00000005324	srpra	99	58.869	Oreochromis_niloticus
ENSCING00000008954	-	100	59.021	ENSOCUG00000017057	SRPRA	99	58.563	Oryctolagus_cuniculus
ENSCING00000008954	-	87	77.389	ENSORLG00000014676	srpra	90	77.188	Oryzias_latipes
ENSCING00000008954	-	100	57.887	ENSORLG00020009240	srpra	99	58.065	Oryzias_latipes_hni
ENSCING00000008954	-	100	57.734	ENSORLG00015015405	srpra	99	57.911	Oryzias_latipes_hsok
ENSCING00000008954	-	100	57.427	ENSOMEG00000005872	srpra	99	57.143	Oryzias_melastigma
ENSCING00000008954	-	100	58.295	ENSOGAG00000008926	SRPRA	99	58.257	Otolemur_garnettii
ENSCING00000008954	-	100	57.927	ENSOARG00000012397	SRPRA	99	57.622	Ovis_aries
ENSCING00000008954	-	100	59.061	ENSPPAG00000030813	SRPRA	99	59.061	Pan_paniscus
ENSCING00000008954	-	100	59.069	ENSPPRG00000001542	SRPRA	99	59.069	Panthera_pardus
ENSCING00000008954	-	100	58.909	ENSPTIG00000006989	SRPRA	99	58.909	Panthera_tigris_altaica
ENSCING00000008954	-	100	59.061	ENSPTRG00000028360	SRPRA	99	59.061	Pan_troglodytes
ENSCING00000008954	-	100	59.098	ENSPANG00000010858	SRPRA	99	59.581	Papio_anubis
ENSCING00000008954	-	100	57.034	ENSPKIG00000016106	srpra	99	57.099	Paramormyrops_kingsleyae
ENSCING00000008954	-	94	55.161	ENSPSIG00000012009	SRPRA	99	55.217	Pelodiscus_sinensis
ENSCING00000008954	-	100	57.757	ENSPMGG00000001393	srpra	99	58.525	Periophthalmus_magnuspinnatus
ENSCING00000008954	-	100	58.716	ENSPEMG00000018279	Srpr	99	57.798	Peromyscus_maniculatus_bairdii
ENSCING00000008954	-	100	54.740	ENSPMAG00000009559	srpra	99	54.518	Petromyzon_marinus
ENSCING00000008954	-	100	57.863	ENSPCIG00000010207	SRPRA	99	58.321	Phascolarctos_cinereus
ENSCING00000008954	-	100	59.021	ENSPFOG00000003114	srpra	99	59.480	Poecilia_formosa
ENSCING00000008954	-	100	58.869	ENSPLAG00000007323	srpra	99	59.327	Poecilia_latipinna
ENSCING00000008954	-	100	59.021	ENSPMEG00000015658	srpra	99	59.480	Poecilia_mexicana
ENSCING00000008954	-	100	58.104	ENSPREG00000004937	srpra	85	77.188	Poecilia_reticulata
ENSCING00000008954	-	89	80.000	ENSPPYG00000004045	SRPRA	99	80.000	Pongo_abelii
ENSCING00000008954	-	61	83.594	ENSPCAG00000003801	-	62	83.594	Procavia_capensis
ENSCING00000008954	-	100	58.473	ENSPCOG00000025726	SRPRA	99	58.479	Propithecus_coquereli
ENSCING00000008954	-	100	58.589	ENSPVAG00000000993	SRPRA	99	58.282	Pteropus_vampyrus
ENSCING00000008954	-	100	58.647	ENSPNYG00000012371	srpra	99	58.859	Pundamilia_nyererei
ENSCING00000008954	-	100	57.627	ENSPNAG00000013476	srpra	99	57.473	Pygocentrus_nattereri
ENSCING00000008954	-	100	58.716	ENSRNOG00000010543	Srpra	99	57.798	Rattus_norvegicus
ENSCING00000008954	-	100	59.061	ENSRBIG00000008702	SRPRA	99	59.061	Rhinopithecus_bieti
ENSCING00000008954	-	100	58.871	ENSRROG00000029494	SRPRA	99	59.355	Rhinopithecus_roxellana
ENSCING00000008954	-	54	39.943	YDR292C	-	55	39.943	Saccharomyces_cerevisiae
ENSCING00000008954	-	100	58.776	ENSSBOG00000035892	SRPRA	99	59.259	Saimiri_boliviensis_boliviensis
ENSCING00000008954	-	94	56.997	ENSSHAG00000009168	SRPRA	99	58.015	Sarcophilus_harrisii
ENSCING00000008954	-	100	55.901	ENSSFOG00015008837	srpra	99	55.901	Scleropages_formosus
ENSCING00000008954	-	100	55.283	ENSSMAG00000002783	srpra	99	55.435	Scophthalmus_maximus
ENSCING00000008954	-	100	57.594	ENSSDUG00000013920	srpra	99	57.143	Seriola_dumerili
ENSCING00000008954	-	100	57.594	ENSSLDG00000008601	srpra	93	59.174	Seriola_lalandi_dorsalis
ENSCING00000008954	-	85	73.171	ENSSARG00000012434	SRPRA	86	73.171	Sorex_araneus
ENSCING00000008954	-	100	56.430	ENSSPUG00000018221	SRPRA	99	56.798	Sphenodon_punctatus
ENSCING00000008954	-	100	56.949	ENSSPAG00000005103	srpra	99	58.600	Stegastes_partitus
ENSCING00000008954	-	100	58.626	ENSSSCG00000015227	SRPRA	99	58.321	Sus_scrofa
ENSCING00000008954	-	94	54.915	ENSTGUG00000000815	SRPRA	99	54.412	Taeniopygia_guttata
ENSCING00000008954	-	100	58.552	ENSTRUG00000006856	srpra	99	58.000	Takifugu_rubripes
ENSCING00000008954	-	100	55.303	ENSTNIG00000010316	srpra	99	54.091	Tetraodon_nigroviridis
ENSCING00000008954	-	100	58.689	ENSTTRG00000001558	SRPRA	99	58.384	Tursiops_truncatus
ENSCING00000008954	-	100	58.384	ENSUAMG00000005510	SRPRA	99	58.346	Ursus_americanus
ENSCING00000008954	-	99	52.000	ENSUMAG00000002269	SRPRA	99	53.662	Ursus_maritimus
ENSCING00000008954	-	71	83.594	ENSVPAG00000001077	SRPRA	75	83.594	Vicugna_pacos
ENSCING00000008954	-	100	58.473	ENSVVUG00000020094	SRPRA	99	58.168	Vulpes_vulpes
ENSCING00000008954	-	100	50.456	ENSXETG00000003920	srpra	99	50.830	Xenopus_tropicalis
ENSCING00000008954	-	74	77.070	ENSXCOG00000001286	srpra	98	75.455	Xiphophorus_couchianus
ENSCING00000008954	-	100	57.143	ENSXMAG00000028401	srpra	99	58.346	Xiphophorus_maculatus