EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009052 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 5941 bases
Position: chr3:4610731-4616671
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000018373	RRM_5	PF13893.6	5e-09	1	1
ENSCINP00000023191	RRM_5	PF13893.6	1.2e-07	1	1
ENSCINP00000018373	RRM_1	PF00076.22	3.7e-46	1	3
ENSCINP00000018373	RRM_1	PF00076.22	3.7e-46	2	3
ENSCINP00000018373	RRM_1	PF00076.22	3.7e-46	3	3
ENSCINP00000023191	RRM_1	PF00076.22	2.6e-41	1	2
ENSCINP00000023191	RRM_1	PF00076.22	2.6e-41	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000023437	-	861	-	ENSCINP00000023191	287 (aa)	-	F6Y5H7
ENSCINT00000018373	-	1467	-	ENSCINP00000018373	343 (aa)	-	F6R2J6

Gene Model

Click here to download ENSCING00000009052's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009052's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009052	-	100	43.548	ENSG00000162374	ELAVL4	92	43.548	Homo_sapiens
ENSCING00000009052	-	99	43.548	ENSAPOG00000020329	elavl4	89	43.548	Acanthochromis_polyacanthus
ENSCING00000009052	-	100	43.548	ENSAMEG00000017455	ELAVL4	91	43.548	Ailuropoda_melanoleuca
ENSCING00000009052	-	99	43.548	ENSACIG00000008793	elavl4	90	43.548	Amphilophus_citrinellus
ENSCING00000009052	-	65	43.548	ENSAOCG00000022907	elavl4	89	43.548	Amphiprion_ocellaris
ENSCING00000009052	-	99	43.548	ENSAPEG00000022826	elavl4	84	43.548	Amphiprion_percula
ENSCING00000009052	-	99	43.548	ENSATEG00000006136	elavl4	88	43.548	Anabas_testudineus
ENSCING00000009052	-	100	43.548	ENSACAG00000004527	ELAVL4	91	43.548	Anolis_carolinensis
ENSCING00000009052	-	100	43.548	ENSANAG00000030598	ELAVL4	92	43.548	Aotus_nancymaae
ENSCING00000009052	-	99	43.548	ENSACLG00000002786	elavl4	86	43.548	Astatotilapia_calliptera
ENSCING00000009052	-	100	43.548	ENSAMXG00000000687	elavl4	89	43.548	Astyanax_mexicanus
ENSCING00000009052	-	100	43.548	ENSBTAG00000021046	ELAVL4	94	43.548	Bos_taurus
ENSCING00000009052	-	82	38.938	WBGene00001368	exc-7	85	39.904	Caenorhabditis_elegans
ENSCING00000009052	-	100	43.548	ENSCJAG00000013725	ELAVL4	92	43.548	Callithrix_jacchus
ENSCING00000009052	-	100	43.548	ENSCAFG00000003927	ELAVL4	92	43.548	Canis_familiaris
ENSCING00000009052	-	100	43.548	ENSCAFG00020013581	ELAVL4	92	43.548	Canis_lupus_dingo
ENSCING00000009052	-	100	43.548	ENSCHIG00000002038	ELAVL4	92	43.548	Capra_hircus
ENSCING00000009052	-	98	35.985	ENSTSYG00000004130	ELAVL4	95	43.548	Carlito_syrichta
ENSCING00000009052	-	91	30.233	ENSCAPG00000005993	ELAVL4	97	30.233	Cavia_aperea
ENSCING00000009052	-	100	32.881	ENSCAPG00000011942	-	89	31.962	Cavia_aperea
ENSCING00000009052	-	100	43.548	ENSCPOG00000002044	-	93	43.548	Cavia_porcellus
ENSCING00000009052	-	93	32.515	ENSCPOG00000022816	-	89	32.399	Cavia_porcellus
ENSCING00000009052	-	100	43.548	ENSCCAG00000024797	ELAVL4	92	43.548	Cebus_capucinus
ENSCING00000009052	-	100	43.548	ENSCATG00000029867	ELAVL4	94	43.548	Cercocebus_atys
ENSCING00000009052	-	100	43.548	ENSCLAG00000005476	ELAVL4	92	43.548	Chinchilla_lanigera
ENSCING00000009052	-	100	43.548	ENSCSAG00000001257	ELAVL4	92	43.548	Chlorocebus_sabaeus
ENSCING00000009052	-	100	43.548	ENSCHOG00000002464	ELAVL4	91	43.548	Choloepus_hoffmanni
ENSCING00000009052	-	100	43.548	ENSCPBG00000010017	ELAVL4	93	43.548	Chrysemys_picta_bellii
ENSCING00000009052	-	100	43.548	ENSCANG00000043683	ELAVL4	92	43.548	Colobus_angolensis_palliatus
ENSCING00000009052	-	100	43.548	ENSCGRG00001020348	Elavl4	93	43.548	Cricetulus_griseus_chok1gshd
ENSCING00000009052	-	100	43.548	ENSCGRG00000009162	Elavl4	93	43.548	Cricetulus_griseus_crigri
ENSCING00000009052	-	99	43.548	ENSCSEG00000020141	elavl4	86	43.548	Cynoglossus_semilaevis
ENSCING00000009052	-	99	43.548	ENSCVAG00000019080	elavl4	94	39.130	Cyprinodon_variegatus
ENSCING00000009052	-	100	43.548	ENSDARG00000045639	elavl4	84	43.548	Danio_rerio
ENSCING00000009052	-	100	43.548	ENSDNOG00000033502	ELAVL4	91	43.548	Dasypus_novemcinctus
ENSCING00000009052	-	100	43.548	ENSDORG00000012729	Elavl4	92	43.548	Dipodomys_ordii
ENSCING00000009052	-	100	43.548	ENSETEG00000013779	ELAVL4	93	43.548	Echinops_telfairi
ENSCING00000009052	-	100	43.548	ENSEASG00005010728	ELAVL4	92	43.548	Equus_asinus_asinus
ENSCING00000009052	-	100	43.548	ENSECAG00000022284	ELAVL4	92	43.548	Equus_caballus
ENSCING00000009052	-	100	43.548	ENSEEUG00000008766	ELAVL4	91	43.548	Erinaceus_europaeus
ENSCING00000009052	-	100	43.548	ENSELUG00000008025	elavl4	84	43.548	Esox_lucius
ENSCING00000009052	-	100	43.548	ENSFCAG00000010438	ELAVL4	92	43.548	Felis_catus
ENSCING00000009052	-	100	43.548	ENSFALG00000005331	ELAVL4	91	43.548	Ficedula_albicollis
ENSCING00000009052	-	100	43.548	ENSFDAG00000014507	ELAVL4	93	43.548	Fukomys_damarensis
ENSCING00000009052	-	99	43.548	ENSFHEG00000004530	elavl4	85	43.548	Fundulus_heteroclitus
ENSCING00000009052	-	99	43.548	ENSGMOG00000006515	elavl4	91	43.548	Gadus_morhua
ENSCING00000009052	-	100	43.548	ENSGALG00000010533	ELAVL4	92	43.548	Gallus_gallus
ENSCING00000009052	-	99	37.954	ENSGAFG00000015956	elavl4	79	37.954	Gambusia_affinis
ENSCING00000009052	-	99	43.548	ENSGACG00000011152	elavl4	90	43.548	Gasterosteus_aculeatus
ENSCING00000009052	-	100	43.548	ENSGAGG00000018269	ELAVL4	92	43.548	Gopherus_agassizii
ENSCING00000009052	-	100	43.548	ENSGGOG00000000634	ELAVL4	94	43.548	Gorilla_gorilla
ENSCING00000009052	-	99	43.548	ENSHBUG00000009691	elavl4	86	43.548	Haplochromis_burtoni
ENSCING00000009052	-	100	43.548	ENSHGLG00000000485	ELAVL4	94	43.548	Heterocephalus_glaber_female
ENSCING00000009052	-	100	43.548	ENSHGLG00100002567	ELAVL4	94	43.548	Heterocephalus_glaber_male
ENSCING00000009052	-	99	43.548	ENSHCOG00000002490	elavl4	92	43.548	Hippocampus_comes
ENSCING00000009052	-	100	43.548	ENSIPUG00000001381	elavl4	85	43.548	Ictalurus_punctatus
ENSCING00000009052	-	100	43.548	ENSSTOG00000027271	ELAVL4	92	43.548	Ictidomys_tridecemlineatus
ENSCING00000009052	-	100	43.548	ENSJJAG00000023099	Elavl4	94	43.548	Jaculus_jaculus
ENSCING00000009052	-	99	43.548	ENSKMAG00000022289	elavl4	82	43.548	Kryptolebias_marmoratus
ENSCING00000009052	-	99	43.548	ENSLBEG00000007096	elavl4	83	43.548	Labrus_bergylta
ENSCING00000009052	-	68	43.548	ENSLBEG00000015023	elavl4	95	43.548	Labrus_bergylta
ENSCING00000009052	-	100	43.548	ENSLACG00000008316	ELAVL4	91	43.548	Latimeria_chalumnae
ENSCING00000009052	-	100	43.548	ENSLOCG00000009363	elavl4	83	43.548	Lepisosteus_oculatus
ENSCING00000009052	-	100	43.548	ENSLAFG00000001087	ELAVL4	99	37.395	Loxodonta_africana
ENSCING00000009052	-	100	43.548	ENSMFAG00000039866	ELAVL4	94	43.548	Macaca_fascicularis
ENSCING00000009052	-	100	43.548	ENSMMUG00000021933	ELAVL4	92	43.548	Macaca_mulatta
ENSCING00000009052	-	100	43.548	ENSMNEG00000035576	ELAVL4	92	43.548	Macaca_nemestrina
ENSCING00000009052	-	100	43.548	ENSMLEG00000028616	ELAVL4	92	43.548	Mandrillus_leucophaeus
ENSCING00000009052	-	99	43.548	ENSMAMG00000004000	elavl4	89	43.548	Mastacembelus_armatus
ENSCING00000009052	-	99	43.548	ENSMZEG00005010690	elavl4	82	43.548	Maylandia_zebra
ENSCING00000009052	-	100	43.548	ENSMGAG00000010928	ELAVL4	91	43.548	Meleagris_gallopavo
ENSCING00000009052	-	100	43.548	ENSMAUG00000021566	Elavl4	93	43.548	Mesocricetus_auratus
ENSCING00000009052	-	100	43.548	ENSMICG00000003286	ELAVL4	94	43.548	Microcebus_murinus
ENSCING00000009052	-	100	43.548	ENSMOCG00000010309	Elavl4	94	43.548	Microtus_ochrogaster
ENSCING00000009052	-	99	43.548	ENSMMOG00000020264	elavl4	84	43.548	Mola_mola
ENSCING00000009052	-	99	39.298	ENSMODG00000003850	-	98	37.500	Monodelphis_domestica
ENSCING00000009052	-	91	39.427	ENSMODG00000001300	-	95	39.427	Monodelphis_domestica
ENSCING00000009052	-	99	43.548	ENSMALG00000016432	elavl4	86	43.548	Monopterus_albus
ENSCING00000009052	-	100	43.548	MGP_CAROLIEiJ_G0026289	Elavl4	95	46.565	Mus_caroli
ENSCING00000009052	-	100	43.548	ENSMUSG00000028546	Elavl4	95	46.565	Mus_musculus
ENSCING00000009052	-	100	43.548	MGP_PahariEiJ_G0028622	Elavl4	95	46.565	Mus_pahari
ENSCING00000009052	-	100	43.548	MGP_SPRETEiJ_G0027258	Elavl4	95	46.565	Mus_spretus
ENSCING00000009052	-	100	43.548	ENSMPUG00000007192	ELAVL4	92	43.548	Mustela_putorius_furo
ENSCING00000009052	-	100	43.548	ENSMLUG00000006226	ELAVL4	91	43.548	Myotis_lucifugus
ENSCING00000009052	-	100	43.548	ENSNGAG00000023123	Elavl4	93	43.548	Nannospalax_galili
ENSCING00000009052	-	100	43.548	ENSNLEG00000016303	ELAVL4	92	43.548	Nomascus_leucogenys
ENSCING00000009052	-	100	43.548	ENSMEUG00000007145	ELAVL4	93	43.548	Notamacropus_eugenii
ENSCING00000009052	-	100	43.548	ENSOPRG00000015300	ELAVL4	91	43.548	Ochotona_princeps
ENSCING00000009052	-	100	43.548	ENSODEG00000006770	ELAVL4	94	43.548	Octodon_degus
ENSCING00000009052	-	99	43.548	ENSONIG00000002360	elavl4	87	43.548	Oreochromis_niloticus
ENSCING00000009052	-	90	35.470	ENSOANG00000007377	ELAVL4	100	35.470	Ornithorhynchus_anatinus
ENSCING00000009052	-	100	43.548	ENSOCUG00000016262	ELAVL4	86	43.548	Oryctolagus_cuniculus
ENSCING00000009052	-	99	43.548	ENSORLG00000028487	elavl4	84	43.548	Oryzias_latipes
ENSCING00000009052	-	99	43.548	ENSORLG00020014277	elavl4	84	43.548	Oryzias_latipes_hni
ENSCING00000009052	-	99	43.548	ENSORLG00015010143	elavl4	84	43.548	Oryzias_latipes_hsok
ENSCING00000009052	-	99	43.548	ENSOMEG00000009988	elavl4	82	43.548	Oryzias_melastigma
ENSCING00000009052	-	100	43.548	ENSOGAG00000016990	ELAVL4	91	43.548	Otolemur_garnettii
ENSCING00000009052	-	100	43.548	ENSOARG00000004264	ELAVL4	92	43.548	Ovis_aries
ENSCING00000009052	-	100	43.548	ENSPPAG00000042402	ELAVL4	94	43.548	Pan_paniscus
ENSCING00000009052	-	100	43.548	ENSPPRG00000002764	ELAVL4	92	43.548	Panthera_pardus
ENSCING00000009052	-	100	43.548	ENSPTIG00000016727	ELAVL4	92	43.548	Panthera_tigris_altaica
ENSCING00000009052	-	100	43.548	ENSPTRG00000000723	ELAVL4	94	43.548	Pan_troglodytes
ENSCING00000009052	-	100	43.548	ENSPANG00000017754	ELAVL4	92	43.548	Papio_anubis
ENSCING00000009052	-	100	43.548	ENSPKIG00000006999	elavl4	90	43.548	Paramormyrops_kingsleyae
ENSCING00000009052	-	100	43.548	ENSPSIG00000008545	ELAVL4	92	43.548	Pelodiscus_sinensis
ENSCING00000009052	-	99	43.548	ENSPMGG00000022175	elavl4	89	43.548	Periophthalmus_magnuspinnatus
ENSCING00000009052	-	96	38.710	ENSPEMG00000021058	Elavl3	93	38.571	Peromyscus_maniculatus_bairdii
ENSCING00000009052	-	92	36.196	ENSPCIG00000017116	-	93	36.140	Phascolarctos_cinereus
ENSCING00000009052	-	99	43.548	ENSPFOG00000004811	elavl4	100	37.209	Poecilia_formosa
ENSCING00000009052	-	99	43.548	ENSPLAG00000008085	elavl4	91	43.548	Poecilia_latipinna
ENSCING00000009052	-	99	43.548	ENSPMEG00000015619	elavl4	82	43.548	Poecilia_mexicana
ENSCING00000009052	-	99	43.548	ENSPREG00000018937	elavl4	88	43.548	Poecilia_reticulata
ENSCING00000009052	-	100	43.548	ENSPPYG00000001367	ELAVL4	91	43.548	Pongo_abelii
ENSCING00000009052	-	100	43.548	ENSPCAG00000008215	ELAVL4	91	43.548	Procavia_capensis
ENSCING00000009052	-	100	43.548	ENSPCOG00000024957	ELAVL4	92	43.548	Propithecus_coquereli
ENSCING00000009052	-	71	46.667	ENSPVAG00000003632	ELAVL4	63	46.857	Pteropus_vampyrus
ENSCING00000009052	-	99	43.548	ENSPNYG00000021720	elavl4	92	43.548	Pundamilia_nyererei
ENSCING00000009052	-	100	43.548	ENSPNAG00000017169	elavl4	89	43.548	Pygocentrus_nattereri
ENSCING00000009052	-	100	43.548	ENSRNOG00000023601	Elavl4	91	43.548	Rattus_norvegicus
ENSCING00000009052	-	100	43.548	ENSRBIG00000043810	ELAVL4	92	43.548	Rhinopithecus_bieti
ENSCING00000009052	-	100	43.548	ENSRROG00000044786	ELAVL4	92	43.548	Rhinopithecus_roxellana
ENSCING00000009052	-	100	43.548	ENSSBOG00000022965	ELAVL4	94	43.548	Saimiri_boliviensis_boliviensis
ENSCING00000009052	-	96	36.705	ENSSHAG00000001657	-	90	37.386	Sarcophilus_harrisii
ENSCING00000009052	-	100	43.548	ENSSHAG00000013832	-	92	43.548	Sarcophilus_harrisii
ENSCING00000009052	-	100	43.548	ENSSFOG00015015838	elavl4	89	43.548	Scleropages_formosus
ENSCING00000009052	-	99	43.548	ENSSMAG00000006881	elavl4	88	43.548	Scophthalmus_maximus
ENSCING00000009052	-	99	43.548	ENSSDUG00000000045	elavl4	84	43.548	Seriola_dumerili
ENSCING00000009052	-	99	43.548	ENSSLDG00000005260	elavl4	82	43.548	Seriola_lalandi_dorsalis
ENSCING00000009052	-	100	43.548	ENSSARG00000010733	ELAVL4	93	43.548	Sorex_araneus
ENSCING00000009052	-	100	43.548	ENSSPUG00000011636	ELAVL4	94	43.548	Sphenodon_punctatus
ENSCING00000009052	-	99	43.548	ENSSPAG00000018867	elavl4	86	43.548	Stegastes_partitus
ENSCING00000009052	-	100	43.548	ENSSSCG00000037291	ELAVL4	91	43.548	Sus_scrofa
ENSCING00000009052	-	100	43.548	ENSTGUG00000008597	ELAVL4	93	43.548	Taeniopygia_guttata
ENSCING00000009052	-	99	43.548	ENSTRUG00000000523	elavl4	89	43.548	Takifugu_rubripes
ENSCING00000009052	-	99	43.548	ENSTNIG00000015485	elavl4	91	43.548	Tetraodon_nigroviridis
ENSCING00000009052	-	85	48.120	ENSTBEG00000011730	ELAVL4	65	48.438	Tupaia_belangeri
ENSCING00000009052	-	100	43.548	ENSUAMG00000013026	ELAVL4	93	43.548	Ursus_americanus
ENSCING00000009052	-	100	43.548	ENSUMAG00000023149	ELAVL4	93	43.548	Ursus_maritimus
ENSCING00000009052	-	100	43.548	ENSVPAG00000011606	ELAVL4	91	43.548	Vicugna_pacos
ENSCING00000009052	-	100	43.548	ENSVVUG00000006175	ELAVL4	92	43.548	Vulpes_vulpes
ENSCING00000009052	-	100	43.548	ENSXETG00000008680	elavl4	93	43.548	Xenopus_tropicalis
ENSCING00000009052	-	99	43.548	ENSXMAG00000025683	elavl4	88	43.548	Xiphophorus_maculatus