EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009062 (Gene tree)
Gene ID: 100179078
Gene Symbol: -
Alias: -
Full Name: tRNA pseudouridine(38/39) synthase
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5030 bases
Position: chr10:1115095-1120124
Accession: 100179078
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000018388	PseudoU_synth_1	PF01416.20	6.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000018388	-	1675	XM_002129279	ENSCINP00000018388	510 (aa)	XP_002129315	F6R255

Gene Model

Click here to download ENSCING00000009062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009062	-	63	35.780	ENSG00000110060	PUS3	61	36.391	Homo_sapiens
ENSCING00000009062	-	69	34.637	ENSAPOG00000019483	pus3	81	33.420	Acanthochromis_polyacanthus
ENSCING00000009062	-	80	32.304	ENSAMEG00000000144	PUS3	80	32.304	Ailuropoda_melanoleuca
ENSCING00000009062	-	60	36.538	ENSACIG00000024479	pus3	85	38.298	Amphilophus_citrinellus
ENSCING00000009062	-	65	35.608	ENSAOCG00000006589	pus3	64	35.417	Amphiprion_ocellaris
ENSCING00000009062	-	65	35.417	ENSAPEG00000014617	pus3	65	35.608	Amphiprion_percula
ENSCING00000009062	-	65	36.202	ENSATEG00000022731	pus3	66	36.202	Anabas_testudineus
ENSCING00000009062	-	79	34.783	ENSAPLG00000013285	PUS3	87	34.783	Anas_platyrhynchos
ENSCING00000009062	-	73	33.422	ENSACAG00000000186	PUS3	74	33.422	Anolis_carolinensis
ENSCING00000009062	-	80	31.905	ENSANAG00000035614	PUS3	80	31.905	Aotus_nancymaae
ENSCING00000009062	-	67	34.393	ENSACLG00000007356	pus3	67	34.393	Astatotilapia_calliptera
ENSCING00000009062	-	67	36.571	ENSAMXG00000019534	pus3	66	36.571	Astyanax_mexicanus
ENSCING00000009062	-	65	36.578	ENSBTAG00000014339	PUS3	63	36.578	Bos_taurus
ENSCING00000009062	-	80	32.542	ENSCJAG00000046645	PUS3	80	32.542	Callithrix_jacchus
ENSCING00000009062	-	80	32.143	ENSCAFG00000010534	PUS3	80	32.143	Canis_familiaris
ENSCING00000009062	-	80	32.143	ENSCAFG00020010659	PUS3	80	32.143	Canis_lupus_dingo
ENSCING00000009062	-	65	36.578	ENSCHIG00000012260	PUS3	68	36.190	Capra_hircus
ENSCING00000009062	-	80	32.381	ENSTSYG00000014744	PUS3	80	32.381	Carlito_syrichta
ENSCING00000009062	-	64	37.082	ENSCAPG00000012231	PUS3	62	37.082	Cavia_aperea
ENSCING00000009062	-	64	37.082	ENSCPOG00000032587	PUS3	62	37.082	Cavia_porcellus
ENSCING00000009062	-	80	31.667	ENSCCAG00000035999	PUS3	80	31.667	Cebus_capucinus
ENSCING00000009062	-	63	36.697	ENSCATG00000043123	PUS3	61	36.697	Cercocebus_atys
ENSCING00000009062	-	66	36.471	ENSCLAG00000014947	PUS3	64	36.471	Chinchilla_lanigera
ENSCING00000009062	-	63	35.474	ENSCSAG00000002281	PUS3	61	36.086	Chlorocebus_sabaeus
ENSCING00000009062	-	63	36.697	ENSCHOG00000008442	PUS3	78	36.697	Choloepus_hoffmanni
ENSCING00000009062	-	60	36.218	ENSCSAVG00000002211	-	63	36.859	Ciona_savignyi
ENSCING00000009062	-	65	36.391	ENSCANG00000038729	PUS3	63	36.391	Colobus_angolensis_palliatus
ENSCING00000009062	-	80	32.944	ENSCGRG00001019842	Pus3	80	32.944	Cricetulus_griseus_chok1gshd
ENSCING00000009062	-	80	32.944	ENSCGRG00000010155	Pus3	80	32.944	Cricetulus_griseus_crigri
ENSCING00000009062	-	58	39.799	ENSCSEG00000007948	pus3	59	39.799	Cynoglossus_semilaevis
ENSCING00000009062	-	64	37.462	ENSCVAG00000022150	pus3	64	37.462	Cyprinodon_variegatus
ENSCING00000009062	-	77	34.586	ENSDARG00000028976	pus3	77	34.586	Danio_rerio
ENSCING00000009062	-	63	36.890	ENSDNOG00000040719	PUS3	62	36.890	Dasypus_novemcinctus
ENSCING00000009062	-	79	32.048	ENSDORG00000001819	Pus3	79	32.048	Dipodomys_ordii
ENSCING00000009062	-	57	34.122	FBgn0034703	CG3045	52	34.122	Drosophila_melanogaster
ENSCING00000009062	-	63	34.347	ENSETEG00000013067	PUS3	61	34.347	Echinops_telfairi
ENSCING00000009062	-	80	31.754	ENSEASG00005023003	PUS3	81	31.754	Equus_asinus_asinus
ENSCING00000009062	-	80	31.429	ENSECAG00000007581	PUS3	81	31.429	Equus_caballus
ENSCING00000009062	-	63	35.736	ENSEEUG00000010543	PUS3	61	35.736	Erinaceus_europaeus
ENSCING00000009062	-	67	38.218	ENSELUG00000004425	pus3	69	38.218	Esox_lucius
ENSCING00000009062	-	63	37.920	ENSFCAG00000005340	PUS3	61	37.920	Felis_catus
ENSCING00000009062	-	69	34.746	ENSFALG00000005159	PUS3	67	34.746	Ficedula_albicollis
ENSCING00000009062	-	66	36.765	ENSFDAG00000020745	PUS3	64	36.765	Fukomys_damarensis
ENSCING00000009062	-	64	37.764	ENSFHEG00000010984	pus3	60	37.764	Fundulus_heteroclitus
ENSCING00000009062	-	70	33.609	ENSGMOG00000004534	pus3	76	33.609	Gadus_morhua
ENSCING00000009062	-	71	34.324	ENSGALG00000000962	PUS3	73	34.324	Gallus_gallus
ENSCING00000009062	-	64	37.576	ENSGAFG00000005615	pus3	64	37.576	Gambusia_affinis
ENSCING00000009062	-	66	34.897	ENSGACG00000002125	pus3	67	34.897	Gasterosteus_aculeatus
ENSCING00000009062	-	73	34.400	ENSGAGG00000000160	PUS3	69	34.400	Gopherus_agassizii
ENSCING00000009062	-	80	32.067	ENSGGOG00000015047	PUS3	80	32.067	Gorilla_gorilla
ENSCING00000009062	-	67	34.393	ENSHBUG00000016532	pus3	67	34.582	Haplochromis_burtoni
ENSCING00000009062	-	66	36.471	ENSHGLG00000000565	PUS3	64	36.471	Heterocephalus_glaber_female
ENSCING00000009062	-	55	36.458	ENSHGLG00000006599	-	56	36.458	Heterocephalus_glaber_female
ENSCING00000009062	-	59	31.579	ENSHGLG00000018861	-	63	31.579	Heterocephalus_glaber_female
ENSCING00000009062	-	58	37.288	ENSHGLG00000015753	-	74	37.288	Heterocephalus_glaber_female
ENSCING00000009062	-	50	34.100	ENSHGLG00100002435	-	82	34.100	Heterocephalus_glaber_male
ENSCING00000009062	-	61	30.573	ENSHGLG00100011339	-	68	30.573	Heterocephalus_glaber_male
ENSCING00000009062	-	68	34.463	ENSHGLG00100014825	-	67	34.463	Heterocephalus_glaber_male
ENSCING00000009062	-	55	38.462	ENSHGLG00100008656	-	84	38.462	Heterocephalus_glaber_male
ENSCING00000009062	-	75	35.354	ENSHCOG00000015705	pus3	78	35.309	Hippocampus_comes
ENSCING00000009062	-	58	37.919	ENSIPUG00000000105	pus3	57	37.919	Ictalurus_punctatus
ENSCING00000009062	-	80	32.151	ENSSTOG00000003721	PUS3	81	32.151	Ictidomys_tridecemlineatus
ENSCING00000009062	-	80	31.905	ENSJJAG00000011306	Pus3	81	31.905	Jaculus_jaculus
ENSCING00000009062	-	71	35.054	ENSKMAG00000016715	pus3	69	35.054	Kryptolebias_marmoratus
ENSCING00000009062	-	65	32.738	ENSLBEG00000004143	pus3	67	32.738	Labrus_bergylta
ENSCING00000009062	-	70	33.155	ENSLACG00000011161	PUS3	68	33.155	Latimeria_chalumnae
ENSCING00000009062	-	67	37.752	ENSLOCG00000011922	pus3	69	37.752	Lepisosteus_oculatus
ENSCING00000009062	-	63	35.976	ENSLAFG00000000535	PUS3	61	35.976	Loxodonta_africana
ENSCING00000009062	-	63	36.697	ENSMFAG00000041002	PUS3	61	36.697	Macaca_fascicularis
ENSCING00000009062	-	63	36.697	ENSMMUG00000041875	PUS3	61	36.697	Macaca_mulatta
ENSCING00000009062	-	63	36.697	ENSMNEG00000045347	PUS3	61	36.697	Macaca_nemestrina
ENSCING00000009062	-	63	36.697	ENSMLEG00000029053	PUS3	61	36.697	Mandrillus_leucophaeus
ENSCING00000009062	-	65	35.015	ENSMAMG00000016741	pus3	66	35.015	Mastacembelus_armatus
ENSCING00000009062	-	67	34.104	ENSMZEG00005015950	pus3	67	34.104	Maylandia_zebra
ENSCING00000009062	-	65	36.418	ENSMGAG00000000851	PUS3	78	35.821	Meleagris_gallopavo
ENSCING00000009062	-	80	32.864	ENSMAUG00000015873	Pus3	80	32.864	Mesocricetus_auratus
ENSCING00000009062	-	63	36.170	ENSMICG00000032941	PUS3	61	36.170	Microcebus_murinus
ENSCING00000009062	-	80	33.647	ENSMOCG00000004901	Pus3	80	33.647	Microtus_ochrogaster
ENSCING00000009062	-	65	36.391	ENSMMOG00000013909	pus3	69	36.391	Mola_mola
ENSCING00000009062	-	75	33.588	ENSMODG00000004222	PUS3	80	33.588	Monodelphis_domestica
ENSCING00000009062	-	65	35.905	ENSMALG00000022420	pus3	67	35.905	Monopterus_albus
ENSCING00000009062	-	80	32.151	MGP_CAROLIEiJ_G0031957	Pus3	80	38.028	Mus_caroli
ENSCING00000009062	-	80	31.905	ENSMUSG00000032103	Pus3	80	37.676	Mus_musculus
ENSCING00000009062	-	63	36.778	MGP_PahariEiJ_G0014822	Pus3	80	38.462	Mus_pahari
ENSCING00000009062	-	80	32.143	MGP_SPRETEiJ_G0033081	Pus3	80	38.028	Mus_spretus
ENSCING00000009062	-	80	32.938	ENSMPUG00000006568	PUS3	80	32.938	Mustela_putorius_furo
ENSCING00000009062	-	66	36.047	ENSMLUG00000030636	PUS3	64	36.047	Myotis_lucifugus
ENSCING00000009062	-	80	32.861	ENSNGAG00000013868	Pus3	81	32.861	Nannospalax_galili
ENSCING00000009062	-	67	34.393	ENSNBRG00000015864	pus3	68	34.393	Neolamprologus_brichardi
ENSCING00000009062	-	63	36.086	ENSNLEG00000007460	PUS3	61	36.391	Nomascus_leucogenys
ENSCING00000009062	-	55	38.112	ENSMEUG00000014040	PUS3	52	38.112	Notamacropus_eugenii
ENSCING00000009062	-	63	38.720	ENSOPRG00000007888	-	61	38.720	Ochotona_princeps
ENSCING00000009062	-	66	35.882	ENSODEG00000004280	PUS3	64	35.882	Octodon_degus
ENSCING00000009062	-	69	36.236	ENSONIG00000016224	pus3	72	36.236	Oreochromis_niloticus
ENSCING00000009062	-	67	35.530	ENSOANG00000000406	PUS3	68	35.530	Ornithorhynchus_anatinus
ENSCING00000009062	-	65	36.607	ENSOCUG00000004468	PUS3	60	36.607	Oryctolagus_cuniculus
ENSCING00000009062	-	65	35.629	ENSORLG00000008445	pus3	65	35.629	Oryzias_latipes
ENSCING00000009062	-	67	35.549	ENSORLG00020008847	pus3	66	35.549	Oryzias_latipes_hni
ENSCING00000009062	-	65	35.928	ENSORLG00015007438	pus3	65	35.928	Oryzias_latipes_hsok
ENSCING00000009062	-	72	34.501	ENSOMEG00000014321	pus3	74	34.946	Oryzias_melastigma
ENSCING00000009062	-	65	36.982	ENSOGAG00000008913	PUS3	64	36.982	Otolemur_garnettii
ENSCING00000009062	-	65	36.578	ENSOARG00000011870	PUS3	63	36.578	Ovis_aries
ENSCING00000009062	-	63	35.780	ENSPPAG00000025809	PUS3	61	36.391	Pan_paniscus
ENSCING00000009062	-	63	38.226	ENSPPRG00000005662	PUS3	61	38.226	Panthera_pardus
ENSCING00000009062	-	63	37.920	ENSPTIG00000001192	PUS3	61	37.920	Panthera_tigris_altaica
ENSCING00000009062	-	63	35.780	ENSPTRG00000004449	PUS3	61	36.391	Pan_troglodytes
ENSCING00000009062	-	80	32.542	ENSPANG00000013782	PUS3	80	32.542	Papio_anubis
ENSCING00000009062	-	66	34.985	ENSPKIG00000000646	pus3	67	34.985	Paramormyrops_kingsleyae
ENSCING00000009062	-	66	35.484	ENSPSIG00000013961	PUS3	63	35.484	Pelodiscus_sinensis
ENSCING00000009062	-	67	38.551	ENSPMGG00000000911	pus3	73	38.551	Periophthalmus_magnuspinnatus
ENSCING00000009062	-	80	32.706	ENSPEMG00000009602	Pus3	80	32.706	Peromyscus_maniculatus_bairdii
ENSCING00000009062	-	77	34.152	ENSPCIG00000010225	PUS3	82	34.152	Phascolarctos_cinereus
ENSCING00000009062	-	64	37.576	ENSPFOG00000009447	pus3	69	37.576	Poecilia_formosa
ENSCING00000009062	-	64	37.576	ENSPLAG00000023343	pus3	64	37.576	Poecilia_latipinna
ENSCING00000009062	-	64	37.576	ENSPMEG00000009870	pus3	64	37.576	Poecilia_mexicana
ENSCING00000009062	-	57	40.067	ENSPREG00000003179	pus3	52	40.067	Poecilia_reticulata
ENSCING00000009062	-	80	31.829	ENSPPYG00000004039	PUS3	80	31.829	Pongo_abelii
ENSCING00000009062	-	63	36.391	ENSPCAG00000000441	PUS3	61	36.391	Procavia_capensis
ENSCING00000009062	-	63	36.697	ENSPCOG00000019330	PUS3	61	36.697	Propithecus_coquereli
ENSCING00000009062	-	63	36.890	ENSPVAG00000002606	PUS3	61	36.890	Pteropus_vampyrus
ENSCING00000009062	-	67	34.393	ENSPNYG00000019615	pus3	67	34.393	Pundamilia_nyererei
ENSCING00000009062	-	67	35.174	ENSPNAG00000014541	pus3	65	35.174	Pygocentrus_nattereri
ENSCING00000009062	-	80	32.160	ENSRNOG00000012994	Pus3	81	32.160	Rattus_norvegicus
ENSCING00000009062	-	80	31.429	ENSRBIG00000044456	PUS3	80	31.905	Rhinopithecus_bieti
ENSCING00000009062	-	80	31.905	ENSRROG00000035245	PUS3	61	36.391	Rhinopithecus_roxellana
ENSCING00000009062	-	71	31.818	YFL001W	DEG1	74	31.818	Saccharomyces_cerevisiae
ENSCING00000009062	-	80	31.905	ENSSBOG00000022433	PUS3	80	31.905	Saimiri_boliviensis_boliviensis
ENSCING00000009062	-	78	33.333	ENSSHAG00000001382	PUS3	78	33.333	Sarcophilus_harrisii
ENSCING00000009062	-	66	36.257	ENSSFOG00015004850	pus3	71	36.257	Scleropages_formosus
ENSCING00000009062	-	67	35.735	ENSSMAG00000020340	pus3	66	35.735	Scophthalmus_maximus
ENSCING00000009062	-	67	35.328	ENSSDUG00000020825	pus3	65	35.143	Seriola_dumerili
ENSCING00000009062	-	67	35.511	ENSSLDG00000019932	pus3	65	35.511	Seriola_lalandi_dorsalis
ENSCING00000009062	-	55	36.268	ENSSARG00000013826	PUS3	80	36.268	Sorex_araneus
ENSCING00000009062	-	76	32.992	ENSSPUG00000001412	PUS3	73	32.992	Sphenodon_punctatus
ENSCING00000009062	-	76	33.419	ENSSPAG00000019221	pus3	81	33.419	Stegastes_partitus
ENSCING00000009062	-	65	36.391	ENSSSCG00000015222	PUS3	64	36.391	Sus_scrofa
ENSCING00000009062	-	69	34.746	ENSTGUG00000000778	-	72	34.746	Taeniopygia_guttata
ENSCING00000009062	-	65	34.627	ENSTRUG00000013050	pus3	68	34.627	Takifugu_rubripes
ENSCING00000009062	-	65	35.522	ENSTNIG00000004929	PUS3	67	35.522	Tetraodon_nigroviridis
ENSCING00000009062	-	65	35.608	ENSTNIG00000010307	pus3	74	35.608	Tetraodon_nigroviridis
ENSCING00000009062	-	79	34.048	ENSTBEG00000004382	PUS3	84	34.048	Tupaia_belangeri
ENSCING00000009062	-	79	33.413	ENSTTRG00000012167	PUS3	80	33.413	Tursiops_truncatus
ENSCING00000009062	-	63	36.280	ENSUAMG00000009297	PUS3	61	36.280	Ursus_americanus
ENSCING00000009062	-	63	36.585	ENSUMAG00000001795	PUS3	61	36.585	Ursus_maritimus
ENSCING00000009062	-	81	32.235	ENSVPAG00000001495	PUS3	81	32.235	Vicugna_pacos
ENSCING00000009062	-	80	32.143	ENSVVUG00000020152	PUS3	80	32.143	Vulpes_vulpes
ENSCING00000009062	-	63	33.851	ENSXETG00000024532	pus3	54	33.851	Xenopus_tropicalis
ENSCING00000009062	-	64	36.890	ENSXMAG00000025077	pus3	69	36.890	Xiphophorus_maculatus
ENSCING00000009062	-	56	39.590	ENSXMAG00000028945	pus3	88	39.590	Xiphophorus_maculatus
ENSCING00000009062	-	64	36.778	ENSXMAG00000029934	pus3	69	36.778	Xiphophorus_maculatus
ENSCING00000009062	-	64	37.500	ENSXMAG00000025659	PUS3	55	36.034	Xiphophorus_maculatus
ENSCING00000009062	-	56	39.590	ENSXMAG00000025146	pus3	82	39.590	Xiphophorus_maculatus
ENSCING00000009062	-	66	37.101	ENSXMAG00000028016	pus3	72	36.240	Xiphophorus_maculatus