EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009149 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 25107 bases
Position: chr5:4008381-4033487
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000018578	Not1	PF04054.15	2.4e-149	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000018578	-	7066	-	ENSCINP00000018578	2317 (aa)	-	F7BBD1

Gene Model

Click here to download ENSCING00000009149's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009149's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009149	-	100	58.658	ENSG00000125107	CNOT1	100	92.000	Homo_sapiens
ENSCING00000009149	-	100	56.576	ENSAPOG00000005042	cnot1	100	57.036	Acanthochromis_polyacanthus
ENSCING00000009149	-	100	58.658	ENSAMEG00000017298	CNOT1	100	59.061	Ailuropoda_melanoleuca
ENSCING00000009149	-	90	59.051	ENSACIG00000016003	cnot1	100	59.418	Amphilophus_citrinellus
ENSCING00000009149	-	100	58.082	ENSAPEG00000022342	cnot1	100	58.479	Amphiprion_percula
ENSCING00000009149	-	100	56.995	ENSATEG00000012892	cnot1	100	57.172	Anabas_testudineus
ENSCING00000009149	-	100	58.440	ENSAPLG00000007162	CNOT1	100	58.858	Anas_platyrhynchos
ENSCING00000009149	-	91	56.140	ENSACAG00000001602	CNOT1	98	56.124	Anolis_carolinensis
ENSCING00000009149	-	100	56.382	ENSANAG00000038198	CNOT1	100	56.700	Aotus_nancymaae
ENSCING00000009149	-	100	56.971	ENSACLG00000014234	cnot1	100	56.930	Astatotilapia_calliptera
ENSCING00000009149	-	100	58.462	ENSAMXG00000013170	cnot1	100	58.787	Astyanax_mexicanus
ENSCING00000009149	-	95	82.258	ENSBTAG00000020782	CNOT1	100	82.258	Bos_taurus
ENSCING00000009149	-	72	39.897	WBGene00002845	let-711	89	55.895	Caenorhabditis_elegans
ENSCING00000009149	-	100	58.699	ENSCJAG00000011318	CNOT1	100	77.677	Callithrix_jacchus
ENSCING00000009149	-	100	58.578	ENSCAFG00000008426	CNOT1	100	58.897	Canis_familiaris
ENSCING00000009149	-	95	78.571	ENSCAFG00020010156	CNOT1	100	79.518	Canis_lupus_dingo
ENSCING00000009149	-	100	58.904	ENSCHIG00000010452	CNOT1	100	59.078	Capra_hircus
ENSCING00000009149	-	100	58.699	ENSTSYG00000006888	CNOT1	100	59.036	Carlito_syrichta
ENSCING00000009149	-	96	61.802	ENSCPOG00000013026	CNOT1	99	61.944	Cavia_porcellus
ENSCING00000009149	-	100	59.359	ENSCCAG00000026333	CNOT1	100	59.671	Cebus_capucinus
ENSCING00000009149	-	92	72.752	ENSCATG00000032625	CNOT1	100	58.995	Cercocebus_atys
ENSCING00000009149	-	100	58.946	ENSCLAG00000006289	CNOT1	100	59.119	Chinchilla_lanigera
ENSCING00000009149	-	100	58.658	ENSCSAG00000004731	CNOT1	100	58.995	Chlorocebus_sabaeus
ENSCING00000009149	-	78	84.099	ENSCHOG00000009712	CNOT1	78	85.185	Choloepus_hoffmanni
ENSCING00000009149	-	93	81.275	ENSCPBG00000026222	CNOT1	98	82.258	Chrysemys_picta_bellii
ENSCING00000009149	-	85	88.698	ENSCSAVG00000002414	-	83	93.464	Ciona_savignyi
ENSCING00000009149	-	100	57.914	ENSCANG00000040534	CNOT1	100	58.230	Colobus_angolensis_palliatus
ENSCING00000009149	-	100	58.669	ENSCGRG00001016365	Cnot1	100	58.953	Cricetulus_griseus_chok1gshd
ENSCING00000009149	-	100	58.669	ENSCGRG00000001714	Cnot1	100	58.953	Cricetulus_griseus_crigri
ENSCING00000009149	-	98	77.254	ENSCVAG00000018930	cnot1	100	77.254	Cyprinodon_variegatus
ENSCING00000009149	-	100	58.882	ENSDARG00000004174	cnot1	100	58.758	Danio_rerio
ENSCING00000009149	-	100	57.610	ENSDNOG00000013250	CNOT1	100	57.659	Dasypus_novemcinctus
ENSCING00000009149	-	96	49.232	FBgn0085436	Not1	77	49.232	Drosophila_melanogaster
ENSCING00000009149	-	82	77.895	ENSETEG00000012806	CNOT1	80	77.895	Echinops_telfairi
ENSCING00000009149	-	78	67.704	ENSEBUG00000011534	cnot1	88	67.704	Eptatretus_burgeri
ENSCING00000009149	-	95	82.258	ENSEASG00005005819	CNOT1	100	82.258	Equus_asinus_asinus
ENSCING00000009149	-	100	59.208	ENSECAG00000009889	CNOT1	100	60.111	Equus_caballus
ENSCING00000009149	-	85	72.462	ENSEEUG00000006015	CNOT1	83	72.462	Erinaceus_europaeus
ENSCING00000009149	-	100	57.697	ENSELUG00000014085	cnot1	100	57.841	Esox_lucius
ENSCING00000009149	-	100	58.571	ENSFCAG00000025155	CNOT1	100	58.889	Felis_catus
ENSCING00000009149	-	100	58.897	ENSFALG00000007285	CNOT1	100	59.038	Ficedula_albicollis
ENSCING00000009149	-	100	58.946	ENSFDAG00000013399	CNOT1	100	59.119	Fukomys_damarensis
ENSCING00000009149	-	100	58.669	ENSFHEG00000020574	cnot1	100	58.354	Fundulus_heteroclitus
ENSCING00000009149	-	90	56.047	ENSGMOG00000012864	cnot1	100	56.458	Gadus_morhua
ENSCING00000009149	-	100	58.814	ENSGALG00000002301	CNOT1	100	58.955	Gallus_gallus
ENSCING00000009149	-	100	57.914	ENSGAFG00000015005	cnot1	100	58.136	Gambusia_affinis
ENSCING00000009149	-	90	56.367	ENSGACG00000002606	cnot1	100	75.966	Gasterosteus_aculeatus
ENSCING00000009149	-	100	58.904	ENSGAGG00000022646	CNOT1	100	64.057	Gopherus_agassizii
ENSCING00000009149	-	100	58.616	ENSGGOG00000009547	CNOT1	100	58.953	Gorilla_gorilla
ENSCING00000009149	-	100	57.013	ENSHBUG00000001729	cnot1	100	56.877	Haplochromis_burtoni
ENSCING00000009149	-	100	58.987	ENSHGLG00000014322	CNOT1	100	59.161	Heterocephalus_glaber_female
ENSCING00000009149	-	100	58.375	ENSHCOG00000006501	cnot1	100	58.306	Hippocampus_comes
ENSCING00000009149	-	100	57.984	ENSIPUG00000011915	cnot1	100	58.046	Ictalurus_punctatus
ENSCING00000009149	-	100	58.865	ENSSTOG00000005490	CNOT1	100	59.078	Ictidomys_tridecemlineatus
ENSCING00000009149	-	100	58.548	ENSJJAG00000000633	Cnot1	100	58.853	Jaculus_jaculus
ENSCING00000009149	-	100	58.454	ENSKMAG00000006149	cnot1	100	58.454	Kryptolebias_marmoratus
ENSCING00000009149	-	95	79.880	ENSLBEG00000004740	cnot1	100	80.847	Labrus_bergylta
ENSCING00000009149	-	100	58.745	ENSLACG00000010869	CNOT1	100	58.780	Latimeria_chalumnae
ENSCING00000009149	-	100	58.741	ENSLOCG00000006324	cnot1	100	58.999	Lepisosteus_oculatus
ENSCING00000009149	-	100	58.609	ENSLAFG00000000098	CNOT1	100	58.929	Loxodonta_africana
ENSCING00000009149	-	100	58.575	ENSMFAG00000035888	CNOT1	100	58.995	Macaca_fascicularis
ENSCING00000009149	-	100	58.658	ENSMMUG00000014625	CNOT1	94	85.455	Macaca_mulatta
ENSCING00000009149	-	100	58.006	ENSMNEG00000031820	CNOT1	100	60.111	Macaca_nemestrina
ENSCING00000009149	-	100	57.551	ENSMLEG00000040933	CNOT1	100	57.731	Mandrillus_leucophaeus
ENSCING00000009149	-	100	57.737	ENSMAMG00000016524	cnot1	100	57.862	Mastacembelus_armatus
ENSCING00000009149	-	100	56.113	ENSMZEG00005016210	cnot1	100	56.071	Maylandia_zebra
ENSCING00000009149	-	100	58.745	ENSMGAG00000001908	CNOT1	100	58.955	Meleagris_gallopavo
ENSCING00000009149	-	100	58.811	ENSMICG00000007071	CNOT1	100	59.025	Microcebus_murinus
ENSCING00000009149	-	100	58.427	ENSMOCG00000017969	Cnot1	100	58.953	Microtus_ochrogaster
ENSCING00000009149	-	100	56.185	ENSMMOG00000019134	cnot1	100	56.136	Mola_mola
ENSCING00000009149	-	100	58.050	ENSMODG00000014199	CNOT1	100	58.855	Monodelphis_domestica
ENSCING00000009149	-	100	57.949	ENSMALG00000008645	cnot1	100	58.004	Monopterus_albus
ENSCING00000009149	-	95	76.374	MGP_CAROLIEiJ_G0031430	Cnot1	92	76.374	Mus_caroli
ENSCING00000009149	-	100	58.468	ENSMUSG00000036550	Cnot1	100	58.995	Mus_musculus
ENSCING00000009149	-	100	58.631	MGP_PahariEiJ_G0023028	Cnot1	100	58.995	Mus_pahari
ENSCING00000009149	-	100	58.468	MGP_SPRETEiJ_G0032549	Cnot1	100	58.995	Mus_spretus
ENSCING00000009149	-	100	58.741	ENSMPUG00000004830	CNOT1	100	59.061	Mustela_putorius_furo
ENSCING00000009149	-	100	58.797	ENSMLUG00000003728	CNOT1	100	58.995	Myotis_lucifugus
ENSCING00000009149	-	100	58.699	ENSNGAG00000018628	Cnot1	100	59.036	Nannospalax_galili
ENSCING00000009149	-	100	56.053	ENSNBRG00000019358	cnot1	100	55.915	Neolamprologus_brichardi
ENSCING00000009149	-	100	58.682	ENSNLEG00000003566	CNOT1	100	58.978	Nomascus_leucogenys
ENSCING00000009149	-	82	63.057	ENSMEUG00000006145	CNOT1	87	60.641	Notamacropus_eugenii
ENSCING00000009149	-	81	81.778	ENSOPRG00000005604	CNOT1	79	81.778	Ochotona_princeps
ENSCING00000009149	-	100	58.946	ENSODEG00000016337	CNOT1	100	59.119	Octodon_degus
ENSCING00000009149	-	100	58.492	ENSONIG00000007358	cnot1	100	58.420	Oreochromis_niloticus
ENSCING00000009149	-	89	59.870	ENSOANG00000012109	CNOT1	99	60.353	Ornithorhynchus_anatinus
ENSCING00000009149	-	100	58.741	ENSOCUG00000006911	CNOT1	100	59.119	Oryctolagus_cuniculus
ENSCING00000009149	-	100	58.326	ENSORLG00000013734	cnot1	100	58.589	Oryzias_latipes
ENSCING00000009149	-	100	56.579	ENSORLG00020017012	cnot1	100	56.752	Oryzias_latipes_hni
ENSCING00000009149	-	100	56.438	ENSORLG00015007091	cnot1	100	56.525	Oryzias_latipes_hsok
ENSCING00000009149	-	100	56.549	ENSOMEG00000015124	cnot1	100	56.858	Oryzias_melastigma
ENSCING00000009149	-	100	59.004	ENSOGAG00000000543	CNOT1	100	59.078	Otolemur_garnettii
ENSCING00000009149	-	100	58.904	ENSOARG00000001567	CNOT1	100	59.078	Ovis_aries
ENSCING00000009149	-	100	58.658	ENSPPAG00000022013	CNOT1	100	58.995	Pan_paniscus
ENSCING00000009149	-	100	58.741	ENSPPRG00000004867	CNOT1	100	59.061	Panthera_pardus
ENSCING00000009149	-	100	58.741	ENSPTIG00000012589	CNOT1	100	59.061	Panthera_tigris_altaica
ENSCING00000009149	-	100	58.488	ENSPTRG00000008183	CNOT1	100	58.806	Pan_troglodytes
ENSCING00000009149	-	100	57.420	ENSPANG00000020901	CNOT1	100	57.751	Papio_anubis
ENSCING00000009149	-	99	57.008	ENSPKIG00000002914	CNOT1	99	57.007	Paramormyrops_kingsleyae
ENSCING00000009149	-	100	58.544	ENSPKIG00000023538	CNOT1	100	58.724	Paramormyrops_kingsleyae
ENSCING00000009149	-	100	58.914	ENSPSIG00000005499	CNOT1	100	59.014	Pelodiscus_sinensis
ENSCING00000009149	-	100	58.626	ENSPMAG00000009381	cnot1	100	58.767	Petromyzon_marinus
ENSCING00000009149	-	95	82.056	ENSPCIG00000007343	CNOT1	100	82.056	Phascolarctos_cinereus
ENSCING00000009149	-	99	58.121	ENSPFOG00000003497	cnot1	100	58.403	Poecilia_formosa
ENSCING00000009149	-	95	79.482	ENSPLAG00000014018	cnot1	100	79.482	Poecilia_latipinna
ENSCING00000009149	-	95	79.482	ENSPMEG00000005868	cnot1	100	79.482	Poecilia_mexicana
ENSCING00000009149	-	95	79.482	ENSPREG00000018793	cnot1	100	79.482	Poecilia_reticulata
ENSCING00000009149	-	100	58.616	ENSPPYG00000007410	CNOT1	100	58.953	Pongo_abelii
ENSCING00000009149	-	89	72.569	ENSPCAG00000003241	CNOT1	87	73.236	Procavia_capensis
ENSCING00000009149	-	100	58.668	ENSPCOG00000027139	CNOT1	100	58.894	Propithecus_coquereli
ENSCING00000009149	-	100	56.338	ENSPVAG00000004243	CNOT1	100	56.899	Pteropus_vampyrus
ENSCING00000009149	-	100	56.905	ENSPNYG00000012919	cnot1	100	56.823	Pundamilia_nyererei
ENSCING00000009149	-	100	58.136	ENSPNAG00000000246	cnot1	100	58.316	Pygocentrus_nattereri
ENSCING00000009149	-	100	58.589	ENSRNOG00000012271	Cnot1	100	58.936	Rattus_norvegicus
ENSCING00000009149	-	100	57.840	ENSRBIG00000044598	CNOT1	100	58.161	Rhinopithecus_bieti
ENSCING00000009149	-	100	58.658	ENSRROG00000000906	CNOT1	100	58.995	Rhinopithecus_roxellana
ENSCING00000009149	-	100	56.294	ENSSBOG00000029155	CNOT1	100	56.594	Saimiri_boliviensis_boliviensis
ENSCING00000009149	-	100	58.502	ENSSHAG00000012187	CNOT1	100	58.838	Sarcophilus_harrisii
ENSCING00000009149	-	100	57.090	ENSSFOG00015017614	cnot1	100	57.149	Scleropages_formosus
ENSCING00000009149	-	100	57.992	ENSSMAG00000013844	cnot1	100	58.258	Scophthalmus_maximus
ENSCING00000009149	-	100	56.953	ENSSDUG00000021491	cnot1	100	57.024	Seriola_dumerili
ENSCING00000009149	-	100	57.998	ENSSLDG00000014816	cnot1	100	58.547	Seriola_lalandi_dorsalis
ENSCING00000009149	-	83	81.437	ENSSARG00000000762	CNOT1	88	81.437	Sorex_araneus
ENSCING00000009149	-	100	58.413	ENSSPAG00000018802	cnot1	100	58.288	Stegastes_partitus
ENSCING00000009149	-	95	81.275	ENSSSCG00000002799	CNOT1	100	82.258	Sus_scrofa
ENSCING00000009149	-	100	58.838	ENSTGUG00000005919	CNOT1	100	58.965	Taeniopygia_guttata
ENSCING00000009149	-	100	58.430	ENSTNIG00000018706	cnot1	100	58.347	Tetraodon_nigroviridis
ENSCING00000009149	-	73	77.622	ENSTBEG00000000720	CNOT1	70	77.622	Tupaia_belangeri
ENSCING00000009149	-	91	61.591	ENSTTRG00000008460	CNOT1	93	62.069	Tursiops_truncatus
ENSCING00000009149	-	100	58.741	ENSUAMG00000009251	CNOT1	100	59.061	Ursus_americanus
ENSCING00000009149	-	100	58.741	ENSUMAG00000021291	CNOT1	100	59.061	Ursus_maritimus
ENSCING00000009149	-	97	73.498	ENSVPAG00000008846	CNOT1	97	73.498	Vicugna_pacos
ENSCING00000009149	-	95	78.571	ENSVVUG00000024037	CNOT1	100	79.518	Vulpes_vulpes
ENSCING00000009149	-	100	56.918	ENSXETG00000015900	cnot1	100	57.143	Xenopus_tropicalis
ENSCING00000009149	-	100	57.914	ENSXCOG00000013552	cnot1	100	58.164	Xiphophorus_couchianus
ENSCING00000009149	-	100	57.956	ENSXMAG00000006031	cnot1	100	58.205	Xiphophorus_maculatus