EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009238 (Gene tree)
Gene ID: 100183682
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein 28
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4375 bases
Position: chr5:4793071-4797445
Accession: 100183682
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000018772	RRM_1	PF00076.22	2.5e-62	1	4
ENSCINP00000018772	RRM_1	PF00076.22	2.5e-62	2	4
ENSCINP00000018772	RRM_1	PF00076.22	2.5e-62	3	4
ENSCINP00000018772	RRM_1	PF00076.22	2.5e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000018772	-	2517	XM_002130539	ENSCINP00000018772	834 (aa)	XP_002130575	F6W170

Gene Model

Click here to download ENSCING00000009238's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009238's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009238	-	58	41.571	ENSG00000106344	RBM28	73	41.955	Homo_sapiens
ENSCING00000009238	-	99	36.637	ENSAMEG00000004776	RBM28	64	40.900	Ailuropoda_melanoleuca
ENSCING00000009238	-	50	36.952	ENSACIG00000023153	rbm28	91	36.427	Amphilophus_citrinellus
ENSCING00000009238	-	83	42.169	ENSANAG00000033922	RBM28	95	40.643	Aotus_nancymaae
ENSCING00000009238	-	51	39.783	ENSBTAG00000017001	RBM28	72	40.000	Bos_taurus
ENSCING00000009238	-	57	40.777	ENSCJAG00000017731	RBM28	84	40.612	Callithrix_jacchus
ENSCING00000009238	-	84	39.233	ENSCAFG00000001667	RBM28	95	41.504	Canis_familiaris
ENSCING00000009238	-	84	39.233	ENSCAFG00020021648	RBM28	95	41.504	Canis_lupus_dingo
ENSCING00000009238	-	56	41.582	ENSTSYG00000002892	RBM28	72	42.672	Carlito_syrichta
ENSCING00000009238	-	66	34.642	ENSCAPG00000013218	RBM28	95	34.506	Cavia_aperea
ENSCING00000009238	-	56	40.763	ENSCCAG00000035105	RBM28	75	40.443	Cebus_capucinus
ENSCING00000009238	-	58	40.971	ENSCATG00000040497	RBM28	71	41.737	Cercocebus_atys
ENSCING00000009238	-	85	40.000	ENSCLAG00000003707	RBM28	71	42.082	Chinchilla_lanigera
ENSCING00000009238	-	68	40.078	ENSCGRG00001021278	Rbm28	78	60.417	Cricetulus_griseus_chok1gshd
ENSCING00000009238	-	83	38.685	ENSCSEG00000004212	rbm28	93	39.073	Cynoglossus_semilaevis
ENSCING00000009238	-	59	38.921	ENSDORG00000004184	Rbm28	86	40.821	Dipodomys_ordii
ENSCING00000009238	-	54	39.083	FBgn0260456	CG4806	65	37.832	Drosophila_melanogaster
ENSCING00000009238	-	59	37.037	ENSETEG00000007130	RBM28	66	36.054	Echinops_telfairi
ENSCING00000009238	-	74	36.422	ENSEBUG00000004419	rbm28	61	38.427	Eptatretus_burgeri
ENSCING00000009238	-	86	36.578	ENSEEUG00000002389	RBM28	80	64.130	Erinaceus_europaeus
ENSCING00000009238	-	84	41.018	ENSFCAG00000000946	RBM28	95	40.267	Felis_catus
ENSCING00000009238	-	83	39.744	ENSGMOG00000007091	rbm28	95	39.744	Gadus_morhua
ENSCING00000009238	-	63	58.974	ENSGAGG00000008873	RBM28	82	62.921	Gopherus_agassizii
ENSCING00000009238	-	56	41.535	ENSGGOG00000004644	RBM28	61	41.752	Gorilla_gorilla
ENSCING00000009238	-	66	42.913	ENSHBUG00000009611	rbm28	94	41.667	Haplochromis_burtoni
ENSCING00000009238	-	85	40.426	ENSHGLG00000005409	RBM28	67	41.432	Heterocephalus_glaber_female
ENSCING00000009238	-	54	42.222	ENSHCOG00000010597	rbm28	56	43.382	Hippocampus_comes
ENSCING00000009238	-	83	42.169	ENSSTOG00000002169	RBM28	95	40.000	Ictidomys_tridecemlineatus
ENSCING00000009238	-	78	61.039	ENSLOCG00000015541	rbm28	72	60.465	Lepisosteus_oculatus
ENSCING00000009238	-	83	42.169	ENSLAFG00000010717	RBM28	82	63.441	Loxodonta_africana
ENSCING00000009238	-	58	41.420	ENSMFAG00000031036	RBM28	71	41.949	Macaca_fascicularis
ENSCING00000009238	-	58	41.420	ENSMMUG00000007250	RBM28	71	41.949	Macaca_mulatta
ENSCING00000009238	-	58	41.420	ENSMNEG00000036970	RBM28	70	41.949	Macaca_nemestrina
ENSCING00000009238	-	84	38.462	ENSMAMG00000008525	rbm28	96	38.462	Mastacembelus_armatus
ENSCING00000009238	-	56	43.860	ENSMZEG00005019625	rbm28	92	38.700	Maylandia_zebra
ENSCING00000009238	-	68	40.000	ENSMAUG00000002263	Rbm28	95	40.000	Mesocricetus_auratus
ENSCING00000009238	-	74	39.244	ENSMICG00000000107	RBM28	73	64.773	Microcebus_murinus
ENSCING00000009238	-	52	38.914	ENSMMOG00000008600	rbm28	96	37.634	Mola_mola
ENSCING00000009238	-	83	40.000	ENSMLUG00000002186	RBM28	68	40.645	Myotis_lucifugus
ENSCING00000009238	-	58	41.762	ENSNLEG00000012307	RBM28	72	41.955	Nomascus_leucogenys
ENSCING00000009238	-	62	65.934	ENSMEUG00000009611	RBM28	77	51.825	Notamacropus_eugenii
ENSCING00000009238	-	60	63.158	ENSODEG00000013217	-	75	63.158	Octodon_degus
ENSCING00000009238	-	53	41.688	ENSONIG00000014924	rbm28	94	41.667	Oreochromis_niloticus
ENSCING00000009238	-	83	40.121	ENSOANG00000000815	-	96	39.734	Ornithorhynchus_anatinus
ENSCING00000009238	-	66	40.964	ENSOCUG00000003009	RBM28	67	42.457	Oryctolagus_cuniculus
ENSCING00000009238	-	52	42.895	ENSORLG00000009636	rbm28	69	38.816	Oryzias_latipes
ENSCING00000009238	-	60	39.775	ENSORLG00020002123	rbm28	69	38.829	Oryzias_latipes_hni
ENSCING00000009238	-	79	60.000	ENSORLG00015015030	rbm28	88	60.000	Oryzias_latipes_hsok
ENSCING00000009238	-	56	38.735	ENSOGAG00000006011	RBM28	69	41.138	Otolemur_garnettii
ENSCING00000009238	-	56	41.188	ENSPPAG00000041730	RBM28	73	41.393	Pan_paniscus
ENSCING00000009238	-	84	40.419	ENSPPRG00000004420	RBM28	95	40.237	Panthera_pardus
ENSCING00000009238	-	84	40.120	ENSPTIG00000008550	RBM28	95	40.177	Panthera_tigris_altaica
ENSCING00000009238	-	58	41.571	ENSPTRG00000019659	RBM28	73	41.955	Pan_troglodytes
ENSCING00000009238	-	71	41.420	ENSPANG00000022295	RBM28	71	41.949	Papio_anubis
ENSCING00000009238	-	83	38.551	ENSPKIG00000023453	rbm28	95	38.710	Paramormyrops_kingsleyae
ENSCING00000009238	-	61	61.446	ENSPMGG00000012840	rbm28	80	59.341	Periophthalmus_magnuspinnatus
ENSCING00000009238	-	75	42.553	ENSPEMG00000020673	Rbm28	71	41.756	Peromyscus_maniculatus_bairdii
ENSCING00000009238	-	75	43.860	ENSPCIG00000012810	RBM28	95	41.667	Phascolarctos_cinereus
ENSCING00000009238	-	68	42.169	ENSPPYG00000017975	RBM28	69	41.752	Pongo_abelii
ENSCING00000009238	-	56	42.295	ENSPCAG00000008223	RBM28	64	42.997	Procavia_capensis
ENSCING00000009238	-	69	40.964	ENSPCOG00000016797	RBM28	70	41.957	Propithecus_coquereli
ENSCING00000009238	-	84	41.667	ENSPNYG00000014003	rbm28	96	41.667	Pundamilia_nyererei
ENSCING00000009238	-	83	39.060	ENSRNOG00000005468	Rbm28	68	41.250	Rattus_norvegicus
ENSCING00000009238	-	57	40.990	ENSRBIG00000033990	RBM28	72	41.141	Rhinopithecus_bieti
ENSCING00000009238	-	57	41.107	ENSRROG00000040747	RBM28	72	41.260	Rhinopithecus_roxellana
ENSCING00000009238	-	72	42.195	ENSSHAG00000017017	RBM28	86	41.667	Sarcophilus_harrisii
ENSCING00000009238	-	83	40.670	ENSSFOG00015001231	rbm28	93	40.764	Scleropages_formosus
ENSCING00000009238	-	51	38.462	ENSSMAG00000003885	rbm28	91	37.983	Scophthalmus_maximus
ENSCING00000009238	-	51	40.708	ENSSDUG00000014270	rbm28	82	40.991	Seriola_dumerili
ENSCING00000009238	-	61	40.000	ENSSLDG00000020099	rbm28	68	39.241	Seriola_lalandi_dorsalis
ENSCING00000009238	-	64	54.930	ENSSARG00000008303	RBM28	70	54.930	Sorex_araneus
ENSCING00000009238	-	63	45.361	ENSSPUG00000000838	RBM28	61	69.767	Sphenodon_punctatus
ENSCING00000009238	-	54	37.320	ENSTRUG00000013311	rbm28	60	36.768	Takifugu_rubripes
ENSCING00000009238	-	59	43.168	ENSTBEG00000012749	RBM28	66	43.168	Tupaia_belangeri
ENSCING00000009238	-	80	47.619	ENSTTRG00000013647	RBM28	95	39.193	Tursiops_truncatus
ENSCING00000009238	-	84	39.080	ENSUAMG00000006949	RBM28	80	66.279	Ursus_americanus
ENSCING00000009238	-	74	35.651	ENSVPAG00000008304	RBM28	70	66.279	Vicugna_pacos
ENSCING00000009238	-	84	41.379	ENSVVUG00000007270	RBM28	95	42.042	Vulpes_vulpes
ENSCING00000009238	-	53	37.393	ENSXCOG00000020357	rbm28	98	36.049	Xiphophorus_couchianus