EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009372 (Gene tree)
Gene ID: 100175824
Gene Symbol: -
Alias: -
Full Name: 116 kDa U5 small nuclear ribonucleoprotein component
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 7408 bases
Position: chrHT000119.1:82488-89895
Accession: 100175824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000019043	GTP_EFTU	PF00009.27	1.1e-46	1	1
ENSCINP00000019043	GTP_EFTU_D2	PF03144.25	1.6e-10	1	1
ENSCINP00000019043	EFG_IV	PF03764.18	3.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000019043	-	2961	XM_002129647	ENSCINP00000019043	973 (aa)	XP_002129683	F6WXT4

Gene Model

Click here to download ENSCING00000009372's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009372	-	100	77.538	ENSG00000108883	EFTUD2	100	89.552	Homo_sapiens
ENSCING00000009372	-	100	78.234	ENSAPOG00000002433	eftud2	100	78.439	Acanthochromis_polyacanthus
ENSCING00000009372	-	100	77.538	ENSAMEG00000018390	EFTUD2	100	77.538	Ailuropoda_melanoleuca
ENSCING00000009372	-	100	75.873	ENSACIG00000009096	eftud2	100	76.078	Amphilophus_citrinellus
ENSCING00000009372	-	88	75.147	ENSAOCG00000023385	eftud2	100	75.147	Amphiprion_ocellaris
ENSCING00000009372	-	100	78.234	ENSAPEG00000003321	eftud2	100	78.439	Amphiprion_percula
ENSCING00000009372	-	100	78.542	ENSATEG00000000457	eftud2	100	78.645	Anabas_testudineus
ENSCING00000009372	-	99	75.051	ENSAPLG00000011036	EFTUD2	99	75.051	Anas_platyrhynchos
ENSCING00000009372	-	100	77.538	ENSACAG00000007637	EFTUD2	100	77.641	Anolis_carolinensis
ENSCING00000009372	-	100	77.538	ENSANAG00000025320	EFTUD2	100	77.538	Aotus_nancymaae
ENSCING00000009372	-	100	78.645	ENSACLG00000001296	eftud2	100	78.747	Astatotilapia_calliptera
ENSCING00000009372	-	100	77.551	ENSAMXG00000000568	eftud2	100	77.857	Astyanax_mexicanus
ENSCING00000009372	-	100	77.744	ENSBTAG00000013526	EFTUD2	100	77.744	Bos_taurus
ENSCING00000009372	-	99	66.804	WBGene00001166	eftu-2	99	66.770	Caenorhabditis_elegans
ENSCING00000009372	-	100	77.538	ENSCJAG00000012349	EFTUD2	100	77.538	Callithrix_jacchus
ENSCING00000009372	-	100	77.538	ENSCAFG00000014065	EFTUD2	100	77.538	Canis_familiaris
ENSCING00000009372	-	100	77.538	ENSCAFG00020009633	EFTUD2	100	77.538	Canis_lupus_dingo
ENSCING00000009372	-	100	77.744	ENSCHIG00000011603	EFTUD2	100	77.744	Capra_hircus
ENSCING00000009372	-	100	77.538	ENSTSYG00000013172	EFTUD2	100	77.538	Carlito_syrichta
ENSCING00000009372	-	100	77.641	ENSCAPG00000014639	EFTUD2	100	77.949	Cavia_aperea
ENSCING00000009372	-	100	77.641	ENSCPOG00000010566	EFTUD2	100	77.949	Cavia_porcellus
ENSCING00000009372	-	100	77.538	ENSCCAG00000035302	EFTUD2	100	77.538	Cebus_capucinus
ENSCING00000009372	-	100	77.538	ENSCATG00000035809	EFTUD2	100	77.538	Cercocebus_atys
ENSCING00000009372	-	100	77.949	ENSCLAG00000014733	EFTUD2	100	77.949	Chinchilla_lanigera
ENSCING00000009372	-	100	77.538	ENSCSAG00000003614	EFTUD2	100	77.538	Chlorocebus_sabaeus
ENSCING00000009372	-	92	68.462	ENSCHOG00000010031	EFTUD2	99	68.462	Choloepus_hoffmanni
ENSCING00000009372	-	100	77.436	ENSCPBG00000008904	EFTUD2	100	77.538	Chrysemys_picta_bellii
ENSCING00000009372	-	99	93.054	ENSCSAVG00000004985	-	100	95.053	Ciona_savignyi
ENSCING00000009372	-	100	77.538	ENSCANG00000026557	EFTUD2	100	77.538	Colobus_angolensis_palliatus
ENSCING00000009372	-	100	77.641	ENSCGRG00001009904	Eftud2	100	77.439	Cricetulus_griseus_chok1gshd
ENSCING00000009372	-	100	77.641	ENSCGRG00000003825	Eftud2	100	77.439	Cricetulus_griseus_crigri
ENSCING00000009372	-	100	77.515	ENSCSEG00000016775	eftud2	100	77.823	Cynoglossus_semilaevis
ENSCING00000009372	-	100	78.645	ENSCVAG00000012537	eftud2	100	78.850	Cyprinodon_variegatus
ENSCING00000009372	-	100	78.109	ENSDARG00000012261	eftud2	100	78.109	Danio_rerio
ENSCING00000009372	-	100	77.231	ENSDNOG00000008033	EFTUD2	100	77.231	Dasypus_novemcinctus
ENSCING00000009372	-	100	77.538	ENSDORG00000011566	Eftud2	100	77.744	Dipodomys_ordii
ENSCING00000009372	-	100	74.055	FBgn0039566	CG4849	100	73.749	Drosophila_melanogaster
ENSCING00000009372	-	92	91.304	ENSETEG00000005678	EFTUD2	92	91.304	Echinops_telfairi
ENSCING00000009372	-	74	90.547	ENSEBUG00000004047	-	96	80.166	Eptatretus_burgeri
ENSCING00000009372	-	100	77.538	ENSEASG00005010321	EFTUD2	100	77.538	Equus_asinus_asinus
ENSCING00000009372	-	100	77.641	ENSECAG00000019363	EFTUD2	93	77.641	Equus_caballus
ENSCING00000009372	-	83	92.373	ENSEEUG00000011128	EFTUD2	92	92.373	Erinaceus_europaeus
ENSCING00000009372	-	100	78.109	ENSELUG00000017169	eftud2	100	78.109	Esox_lucius
ENSCING00000009372	-	100	77.641	ENSFCAG00000005466	EFTUD2	100	77.641	Felis_catus
ENSCING00000009372	-	100	77.347	ENSFALG00000007551	EFTUD2	100	77.641	Ficedula_albicollis
ENSCING00000009372	-	100	77.653	ENSFDAG00000013143	EFTUD2	100	78.051	Fukomys_damarensis
ENSCING00000009372	-	100	78.439	ENSFHEG00000013479	eftud2	100	78.645	Fundulus_heteroclitus
ENSCING00000009372	-	100	78.029	ENSGMOG00000014277	eftud2	100	78.234	Gadus_morhua
ENSCING00000009372	-	100	77.538	ENSGALG00000000988	EFTUD2	99	79.501	Gallus_gallus
ENSCING00000009372	-	100	78.850	ENSGAFG00000002263	eftud2	100	78.953	Gambusia_affinis
ENSCING00000009372	-	100	78.234	ENSGACG00000009163	eftud2	100	78.542	Gasterosteus_aculeatus
ENSCING00000009372	-	100	77.538	ENSGGOG00000012999	EFTUD2	100	77.538	Gorilla_gorilla
ENSCING00000009372	-	100	78.542	ENSHBUG00000023546	eftud2	100	78.645	Haplochromis_burtoni
ENSCING00000009372	-	100	77.846	ENSHGLG00000014497	EFTUD2	100	77.949	Heterocephalus_glaber_female
ENSCING00000009372	-	100	77.846	ENSHGLG00100013432	EFTUD2	100	77.949	Heterocephalus_glaber_male
ENSCING00000009372	-	100	78.462	ENSHCOG00000017689	eftud2	100	78.667	Hippocampus_comes
ENSCING00000009372	-	100	78.234	ENSIPUG00000023182	Eftud2	100	78.234	Ictalurus_punctatus
ENSCING00000009372	-	92	79.125	ENSSTOG00000012188	EFTUD2	100	74.203	Ictidomys_tridecemlineatus
ENSCING00000009372	-	95	79.718	ENSJJAG00000018268	Eftud2	98	79.718	Jaculus_jaculus
ENSCING00000009372	-	100	77.926	ENSKMAG00000021027	eftud2	100	78.234	Kryptolebias_marmoratus
ENSCING00000009372	-	95	77.694	ENSLBEG00000005875	eftud2	100	79.484	Labrus_bergylta
ENSCING00000009372	-	100	78.337	ENSLACG00000012918	EFTUD2	100	78.106	Latimeria_chalumnae
ENSCING00000009372	-	100	78.726	ENSLOCG00000011460	eftud2	100	78.726	Lepisosteus_oculatus
ENSCING00000009372	-	100	78.051	ENSLAFG00000015344	EFTUD2	99	78.051	Loxodonta_africana
ENSCING00000009372	-	100	77.538	ENSMFAG00000042655	EFTUD2	100	77.538	Macaca_fascicularis
ENSCING00000009372	-	100	77.538	ENSMMUG00000013118	EFTUD2	100	89.552	Macaca_mulatta
ENSCING00000009372	-	100	77.538	ENSMNEG00000037895	EFTUD2	100	77.538	Macaca_nemestrina
ENSCING00000009372	-	100	77.538	ENSMLEG00000032960	EFTUD2	100	77.538	Mandrillus_leucophaeus
ENSCING00000009372	-	100	78.337	ENSMAMG00000022190	eftud2	100	78.439	Mastacembelus_armatus
ENSCING00000009372	-	100	78.645	ENSMZEG00005022885	eftud2	100	78.747	Maylandia_zebra
ENSCING00000009372	-	100	77.380	ENSMGAG00000010083	EFTUD2	99	77.380	Meleagris_gallopavo
ENSCING00000009372	-	100	77.641	ENSMAUG00000021178	Eftud2	100	77.846	Mesocricetus_auratus
ENSCING00000009372	-	100	77.538	ENSMICG00000016592	EFTUD2	100	77.538	Microcebus_murinus
ENSCING00000009372	-	92	63.270	ENSMOCG00000017653	-	90	63.270	Microtus_ochrogaster
ENSCING00000009372	-	100	77.641	ENSMOCG00000009039	-	100	77.846	Microtus_ochrogaster
ENSCING00000009372	-	88	80.657	ENSMMOG00000020811	eftud2	100	80.657	Mola_mola
ENSCING00000009372	-	100	77.641	ENSMODG00000011347	EFTUD2	100	77.641	Monodelphis_domestica
ENSCING00000009372	-	88	79.132	ENSMALG00000014501	eftud2	100	79.132	Monopterus_albus
ENSCING00000009372	-	100	77.744	MGP_CAROLIEiJ_G0017263	Eftud2	100	77.812	Mus_caroli
ENSCING00000009372	-	100	77.949	ENSMUSG00000020929	Eftud2	100	77.949	Mus_musculus
ENSCING00000009372	-	100	77.744	MGP_PahariEiJ_G0018393	Eftud2	100	77.812	Mus_pahari
ENSCING00000009372	-	100	77.744	MGP_SPRETEiJ_G0018106	Eftud2	100	77.812	Mus_spretus
ENSCING00000009372	-	97	77.297	ENSMPUG00000009136	EFTUD2	90	77.297	Mustela_putorius_furo
ENSCING00000009372	-	100	77.538	ENSMLUG00000012164	EFTUD2	99	77.538	Myotis_lucifugus
ENSCING00000009372	-	100	77.641	ENSNGAG00000017834	Eftud2	100	77.846	Nannospalax_galili
ENSCING00000009372	-	100	78.542	ENSNBRG00000020081	eftud2	100	78.645	Neolamprologus_brichardi
ENSCING00000009372	-	97	75.742	ENSNLEG00000005210	EFTUD2	96	75.742	Nomascus_leucogenys
ENSCING00000009372	-	100	74.256	ENSMEUG00000015620	EFTUD2	100	74.256	Notamacropus_eugenii
ENSCING00000009372	-	95	80.169	ENSOPRG00000016323	EFTUD2	95	80.169	Ochotona_princeps
ENSCING00000009372	-	100	78.256	ENSODEG00000018041	-	100	78.256	Octodon_degus
ENSCING00000009372	-	94	64.521	ENSODEG00000003385	-	100	64.521	Octodon_degus
ENSCING00000009372	-	100	78.645	ENSONIG00000000912	eftud2	100	78.747	Oreochromis_niloticus
ENSCING00000009372	-	100	77.641	ENSOCUG00000006879	EFTUD2	100	77.641	Oryctolagus_cuniculus
ENSCING00000009372	-	100	78.131	ENSORLG00000003109	eftud2	100	78.337	Oryzias_latipes
ENSCING00000009372	-	100	78.234	ENSORLG00020009865	eftud2	100	78.439	Oryzias_latipes_hni
ENSCING00000009372	-	100	78.131	ENSORLG00015002611	eftud2	99	80.326	Oryzias_latipes_hsok
ENSCING00000009372	-	100	76.205	ENSOGAG00000012918	EFTUD2	100	76.205	Otolemur_garnettii
ENSCING00000009372	-	100	77.744	ENSOARG00000009078	EFTUD2	97	77.744	Ovis_aries
ENSCING00000009372	-	100	77.538	ENSPPAG00000029450	EFTUD2	100	77.538	Pan_paniscus
ENSCING00000009372	-	100	77.538	ENSPPRG00000010981	EFTUD2	100	77.538	Panthera_pardus
ENSCING00000009372	-	100	77.538	ENSPTIG00000007703	EFTUD2	100	77.538	Panthera_tigris_altaica
ENSCING00000009372	-	100	77.538	ENSPTRG00000009287	EFTUD2	100	77.538	Pan_troglodytes
ENSCING00000009372	-	100	77.538	ENSPANG00000021284	EFTUD2	100	77.538	Papio_anubis
ENSCING00000009372	-	93	75.519	ENSPSIG00000004505	EFTUD2	99	75.604	Pelodiscus_sinensis
ENSCING00000009372	-	100	72.456	ENSPMGG00000007281	eftud2	100	72.354	Periophthalmus_magnuspinnatus
ENSCING00000009372	-	100	77.744	ENSPEMG00000005129	Eftud2	100	77.949	Peromyscus_maniculatus_bairdii
ENSCING00000009372	-	100	77.641	ENSPCIG00000015027	EFTUD2	100	77.641	Phascolarctos_cinereus
ENSCING00000009372	-	100	78.850	ENSPFOG00000008515	eftud2	100	78.953	Poecilia_formosa
ENSCING00000009372	-	100	78.850	ENSPLAG00000010393	eftud2	100	78.953	Poecilia_latipinna
ENSCING00000009372	-	100	78.850	ENSPMEG00000005087	eftud2	100	78.953	Poecilia_mexicana
ENSCING00000009372	-	100	76.513	ENSPPYG00000008320	EFTUD2	100	76.513	Pongo_abelii
ENSCING00000009372	-	100	74.256	ENSPCAG00000000812	EFTUD2	100	74.256	Procavia_capensis
ENSCING00000009372	-	100	77.538	ENSPCOG00000020029	EFTUD2	100	77.538	Propithecus_coquereli
ENSCING00000009372	-	100	74.256	ENSPVAG00000016155	EFTUD2	100	74.256	Pteropus_vampyrus
ENSCING00000009372	-	100	78.542	ENSPNYG00000012448	eftud2	100	78.645	Pundamilia_nyererei
ENSCING00000009372	-	100	77.823	ENSPNAG00000012490	eftud2	100	78.029	Pygocentrus_nattereri
ENSCING00000009372	-	100	77.949	ENSRNOG00000002818	Eftud2	100	77.949	Rattus_norvegicus
ENSCING00000009372	-	100	77.538	ENSRBIG00000043255	EFTUD2	100	77.538	Rhinopithecus_bieti
ENSCING00000009372	-	100	77.538	ENSRROG00000042925	EFTUD2	100	77.538	Rhinopithecus_roxellana
ENSCING00000009372	-	97	34.120	YKL173W	SNU114	97	34.356	Saccharomyces_cerevisiae
ENSCING00000009372	-	100	77.538	ENSSBOG00000021892	EFTUD2	100	77.538	Saimiri_boliviensis_boliviensis
ENSCING00000009372	-	95	79.826	ENSSHAG00000008134	EFTUD2	99	77.778	Sarcophilus_harrisii
ENSCING00000009372	-	100	78.623	ENSSFOG00015023272	eftud2	100	78.623	Scleropages_formosus
ENSCING00000009372	-	100	78.337	ENSSMAG00000010174	eftud2	100	78.439	Scophthalmus_maximus
ENSCING00000009372	-	100	78.439	ENSSDUG00000022675	eftud2	100	78.645	Seriola_dumerili
ENSCING00000009372	-	100	78.439	ENSSLDG00000001595	eftud2	100	78.645	Seriola_lalandi_dorsalis
ENSCING00000009372	-	100	71.179	ENSSARG00000008664	EFTUD2	100	71.179	Sorex_araneus
ENSCING00000009372	-	100	77.026	ENSSPUG00000010249	EFTUD2	100	77.128	Sphenodon_punctatus
ENSCING00000009372	-	100	78.439	ENSSPAG00000016235	eftud2	99	78.542	Stegastes_partitus
ENSCING00000009372	-	100	77.641	ENSSSCG00000017346	EFTUD2	100	77.641	Sus_scrofa
ENSCING00000009372	-	83	77.543	ENSTGUG00000002065	EFTUD2	98	77.543	Taeniopygia_guttata
ENSCING00000009372	-	100	77.515	ENSTRUG00000016422	eftud2	100	77.926	Takifugu_rubripes
ENSCING00000009372	-	100	74.438	ENSTNIG00000005346	eftud2	99	74.642	Tetraodon_nigroviridis
ENSCING00000009372	-	100	72.615	ENSTBEG00000011337	EFTUD2	100	72.615	Tupaia_belangeri
ENSCING00000009372	-	91	76.131	ENSTTRG00000006230	EFTUD2	100	70.872	Tursiops_truncatus
ENSCING00000009372	-	100	76.718	ENSUAMG00000000399	EFTUD2	100	76.718	Ursus_americanus
ENSCING00000009372	-	100	77.538	ENSUMAG00000014323	EFTUD2	100	77.538	Ursus_maritimus
ENSCING00000009372	-	88	89.552	ENSVPAG00000002748	EFTUD2	88	89.552	Vicugna_pacos
ENSCING00000009372	-	100	77.538	ENSVVUG00000018113	EFTUD2	100	77.538	Vulpes_vulpes
ENSCING00000009372	-	97	77.849	ENSXETG00000003394	eftud2	98	78.959	Xenopus_tropicalis
ENSCING00000009372	-	81	79.924	ENSXCOG00000017309	eftud2	96	79.924	Xiphophorus_couchianus
ENSCING00000009372	-	100	78.850	ENSXMAG00000008494	eftud2	100	78.953	Xiphophorus_maculatus