EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009526 (Gene tree)
Gene ID: 100175425
Gene Symbol: -
Alias: -
Full Name: ras-related protein Rab-11B-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 5396 bases
Position: chr3:2175993-2181388
Accession: 100175425
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000023724	MMR_HSR1	PF01926.23	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000023970	-	1239	-	ENSCINP00000023724	217 (aa)	XP_002131435	F6XCQ7

Gene Model

Click here to download ENSCING00000009526's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009526's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009526	-	100	84.475	ENSG00000185236	RAB11B	100	91.304	Homo_sapiens
ENSCING00000009526	-	99	83.636	ENSAMEG00000004955	RAB11B	99	83.636	Ailuropoda_melanoleuca
ENSCING00000009526	-	78	94.118	ENSACIG00000024374	rab11ba	70	94.118	Amphilophus_citrinellus
ENSCING00000009526	-	100	82.110	ENSAOCG00000018050	rab11ba	100	82.110	Amphiprion_ocellaris
ENSCING00000009526	-	100	81.651	ENSAPEG00000009177	rab11ba	100	81.651	Amphiprion_percula
ENSCING00000009526	-	100	83.028	ENSATEG00000023730	rab11ba	100	83.028	Anabas_testudineus
ENSCING00000009526	-	100	84.475	ENSANAG00000037616	RAB11B	95	95.294	Aotus_nancymaae
ENSCING00000009526	-	100	81.651	ENSACLG00000005420	rab11ba	100	81.651	Astatotilapia_calliptera
ENSCING00000009526	-	94	79.310	ENSACLG00000018852	-	92	79.310	Astatotilapia_calliptera
ENSCING00000009526	-	99	79.907	WBGene00004274	rab-11.1	99	79.907	Caenorhabditis_elegans
ENSCING00000009526	-	100	84.475	ENSCJAG00000010778	RAB11B	95	95.294	Callithrix_jacchus
ENSCING00000009526	-	100	84.475	ENSCAFG00000032060	RAB11B	100	84.475	Canis_familiaris
ENSCING00000009526	-	100	84.475	ENSCAFG00020022184	RAB11B	100	84.475	Canis_lupus_dingo
ENSCING00000009526	-	100	84.475	ENSTSYG00000014758	RAB11B	100	84.475	Carlito_syrichta
ENSCING00000009526	-	100	84.404	ENSCPOG00000030154	RAB11B	100	84.404	Cavia_porcellus
ENSCING00000009526	-	100	84.475	ENSCCAG00000031042	RAB11B	94	95.294	Cebus_capucinus
ENSCING00000009526	-	100	84.475	ENSCLAG00000003207	RAB11B	100	84.475	Chinchilla_lanigera
ENSCING00000009526	-	100	84.475	ENSCSAG00000008024	RAB11B	100	84.475	Chlorocebus_sabaeus
ENSCING00000009526	-	100	70.776	ENSCHOG00000013525	RAB11B	100	70.776	Choloepus_hoffmanni
ENSCING00000009526	-	100	84.475	ENSCANG00000040517	RAB11B	100	84.475	Colobus_angolensis_palliatus
ENSCING00000009526	-	100	84.475	ENSCGRG00001013827	Rab11b	100	84.475	Cricetulus_griseus_chok1gshd
ENSCING00000009526	-	100	84.475	ENSCGRG00000010967	Rab11b	100	84.475	Cricetulus_griseus_crigri
ENSCING00000009526	-	100	82.569	ENSCSEG00000007121	rab11ba	84	82.569	Cynoglossus_semilaevis
ENSCING00000009526	-	100	83.945	ENSDARG00000041878	rab11ba	100	83.945	Danio_rerio
ENSCING00000009526	-	100	84.475	ENSDNOG00000014618	RAB11B	97	84.475	Dasypus_novemcinctus
ENSCING00000009526	-	100	83.105	ENSDNOG00000004134	-	100	83.105	Dasypus_novemcinctus
ENSCING00000009526	-	100	84.404	ENSDORG00000006304	Rab11b	100	84.404	Dipodomys_ordii
ENSCING00000009526	-	100	76.712	ENSEBUG00000015447	-	100	76.712	Eptatretus_burgeri
ENSCING00000009526	-	100	82.648	ENSEBUG00000011775	rab11ba	99	82.524	Eptatretus_burgeri
ENSCING00000009526	-	66	96.503	ENSEEUG00000009165	-	100	96.503	Erinaceus_europaeus
ENSCING00000009526	-	84	92.896	ENSELUG00000019240	-	94	92.896	Esox_lucius
ENSCING00000009526	-	100	84.404	ENSFCAG00000015216	RAB11B	100	84.404	Felis_catus
ENSCING00000009526	-	100	84.404	ENSFDAG00000019872	RAB11B	100	84.404	Fukomys_damarensis
ENSCING00000009526	-	100	82.110	ENSFHEG00000022642	rab11ba	100	82.110	Fundulus_heteroclitus
ENSCING00000009526	-	100	81.651	ENSGMOG00000007390	rab11ba	99	81.651	Gadus_morhua
ENSCING00000009526	-	100	82.110	ENSGAFG00000005679	rab11ba	100	82.110	Gambusia_affinis
ENSCING00000009526	-	100	84.932	ENSGAGG00000012557	-	100	84.932	Gopherus_agassizii
ENSCING00000009526	-	100	84.475	ENSHGLG00000014984	RAB11B	100	84.475	Heterocephalus_glaber_female
ENSCING00000009526	-	100	84.018	ENSHGLG00100003638	RAB11B	100	84.018	Heterocephalus_glaber_male
ENSCING00000009526	-	100	84.475	ENSSTOG00000031571	RAB11B	100	84.475	Ictidomys_tridecemlineatus
ENSCING00000009526	-	100	84.475	ENSJJAG00000018891	Rab11b	100	84.475	Jaculus_jaculus
ENSCING00000009526	-	100	82.569	ENSKMAG00000006082	-	100	82.569	Kryptolebias_marmoratus
ENSCING00000009526	-	100	83.871	ENSLBEG00000006087	rab11ba	100	83.871	Labrus_bergylta
ENSCING00000009526	-	78	95.882	ENSLACG00000016974	RAB11B	99	95.882	Latimeria_chalumnae
ENSCING00000009526	-	100	84.475	ENSLAFG00000013598	RAB11B	100	84.475	Loxodonta_africana
ENSCING00000009526	-	100	84.475	ENSMNEG00000039759	-	100	84.475	Macaca_nemestrina
ENSCING00000009526	-	100	83.028	ENSMAMG00000018556	rab11ba	100	83.028	Mastacembelus_armatus
ENSCING00000009526	-	100	81.651	ENSMZEG00005010947	rab11ba	100	81.651	Maylandia_zebra
ENSCING00000009526	-	94	79.310	ENSMZEG00005019251	-	92	79.310	Maylandia_zebra
ENSCING00000009526	-	100	84.018	ENSMAUG00000021579	Rab11b	100	84.018	Mesocricetus_auratus
ENSCING00000009526	-	100	84.404	ENSMOCG00000012667	Rab11b	100	84.404	Microtus_ochrogaster
ENSCING00000009526	-	100	80.734	ENSMALG00000021949	rab11ba	100	80.734	Monopterus_albus
ENSCING00000009526	-	100	84.475	MGP_CAROLIEiJ_G0021415	Rab11b	97	95.862	Mus_caroli
ENSCING00000009526	-	100	84.018	ENSMUSG00000077450	Rab11b	97	95.862	Mus_musculus
ENSCING00000009526	-	100	84.475	MGP_PahariEiJ_G0020420	Rab11b	100	84.475	Mus_pahari
ENSCING00000009526	-	100	84.475	MGP_SPRETEiJ_G0022327	Rab11b	97	95.862	Mus_spretus
ENSCING00000009526	-	100	84.404	ENSMPUG00000007263	RAB11B	100	84.404	Mustela_putorius_furo
ENSCING00000009526	-	100	80.631	ENSMLUG00000002308	-	100	80.631	Myotis_lucifugus
ENSCING00000009526	-	100	84.475	ENSNGAG00000015757	Rab11b	100	84.475	Nannospalax_galili
ENSCING00000009526	-	100	82.110	ENSNBRG00000023898	rab11ba	84	82.110	Neolamprologus_brichardi
ENSCING00000009526	-	100	84.475	ENSNLEG00000001733	RAB11B	100	84.475	Nomascus_leucogenys
ENSCING00000009526	-	100	84.475	ENSODEG00000011371	RAB11B	100	84.475	Octodon_degus
ENSCING00000009526	-	100	82.569	ENSONIG00000002535	rab11ba	100	82.569	Oreochromis_niloticus
ENSCING00000009526	-	72	95.541	ENSOCUG00000028208	RAB11B	63	95.541	Oryctolagus_cuniculus
ENSCING00000009526	-	99	82.488	ENSORLG00000015307	rab11ba	99	82.488	Oryzias_latipes
ENSCING00000009526	-	99	82.488	ENSORLG00020020816	rab11ba	99	82.488	Oryzias_latipes_hni
ENSCING00000009526	-	99	82.870	ENSORLG00015016946	rab11ba	81	82.870	Oryzias_latipes_hsok
ENSCING00000009526	-	99	82.488	ENSOMEG00000002581	rab11ba	99	82.488	Oryzias_melastigma
ENSCING00000009526	-	100	84.475	ENSOGAG00000003227	RAB11B	99	84.475	Otolemur_garnettii
ENSCING00000009526	-	100	84.475	ENSOARG00000003801	RAB11B	97	84.475	Ovis_aries
ENSCING00000009526	-	78	95.294	ENSPPRG00000010160	RAB11B	83	95.294	Panthera_pardus
ENSCING00000009526	-	100	84.475	ENSPEMG00000014536	Rab11b	100	84.475	Peromyscus_maniculatus_bairdii
ENSCING00000009526	-	94	78.261	ENSPMAG00000009335	-	100	78.261	Petromyzon_marinus
ENSCING00000009526	-	100	82.569	ENSPFOG00000006159	rab11ba	100	82.569	Poecilia_formosa
ENSCING00000009526	-	100	82.569	ENSPLAG00000014243	rab11ba	100	82.569	Poecilia_latipinna
ENSCING00000009526	-	100	82.569	ENSPMEG00000007917	rab11ba	75	82.569	Poecilia_mexicana
ENSCING00000009526	-	100	82.569	ENSPREG00000006357	rab11ba	78	82.569	Poecilia_reticulata
ENSCING00000009526	-	100	84.475	ENSPPYG00000009504	RAB11B	100	84.475	Pongo_abelii
ENSCING00000009526	-	100	76.712	ENSPCAG00000016118	RAB11B	100	76.712	Procavia_capensis
ENSCING00000009526	-	100	84.475	ENSPCOG00000028053	RAB11B	93	95.294	Propithecus_coquereli
ENSCING00000009526	-	67	94.521	ENSPCOG00000008655	-	100	94.521	Propithecus_coquereli
ENSCING00000009526	-	100	84.475	ENSPVAG00000009645	RAB11B	100	84.475	Pteropus_vampyrus
ENSCING00000009526	-	100	81.651	ENSPNYG00000019644	rab11ba	100	81.651	Pundamilia_nyererei
ENSCING00000009526	-	94	70.244	ENSPNYG00000023810	-	90	70.244	Pundamilia_nyererei
ENSCING00000009526	-	100	84.404	ENSPNAG00000020475	rab11ba	100	84.404	Pygocentrus_nattereri
ENSCING00000009526	-	100	83.945	ENSPNAG00000006431	-	100	83.945	Pygocentrus_nattereri
ENSCING00000009526	-	100	84.475	ENSRNOG00000007648	Rab11b	100	84.475	Rattus_norvegicus
ENSCING00000009526	-	100	84.475	ENSSBOG00000035094	RAB11B	95	95.294	Saimiri_boliviensis_boliviensis
ENSCING00000009526	-	100	82.569	ENSSDUG00000002965	rab11ba	100	82.569	Seriola_dumerili
ENSCING00000009526	-	100	82.569	ENSSLDG00000005221	rab11ba	100	82.569	Seriola_lalandi_dorsalis
ENSCING00000009526	-	100	83.028	ENSSPAG00000017313	rab11ba	100	83.028	Stegastes_partitus
ENSCING00000009526	-	100	84.475	ENSSSCG00000013600	RAB11B	100	84.475	Sus_scrofa
ENSCING00000009526	-	59	96.899	ENSTBEG00000014750	-	100	96.899	Tupaia_belangeri
ENSCING00000009526	-	100	84.475	ENSTTRG00000009758	RAB11B	100	84.475	Tursiops_truncatus
ENSCING00000009526	-	94	71.707	ENSUMAG00000014594	RAB11B	97	71.707	Ursus_maritimus
ENSCING00000009526	-	100	84.475	ENSVVUG00000025210	RAB11B	100	84.475	Vulpes_vulpes
ENSCING00000009526	-	100	83.486	ENSXETG00000021890	rab11b.2	99	83.486	Xenopus_tropicalis
ENSCING00000009526	-	61	96.992	ENSXCOG00000009194	-	98	96.992	Xiphophorus_couchianus
ENSCING00000009526	-	100	82.110	ENSXMAG00000013416	rab11ba	100	82.110	Xiphophorus_maculatus