EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000009536 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: DNA ligase 4-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 9467 bases
Position: chr3:2280080-2289546
Accession: 100176197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000019410	RNA_ligase	PF09414.10	3.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000019410	-	2046	XM_002131238	ENSCINP00000019410	655 (aa)	XP_002131274	F6UX10

Gene Model

Click here to download ENSCING00000009536's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000009536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000009536	-	95	45.310	ENSG00000174405	LIG4	67	46.573	Homo_sapiens
ENSCING00000009536	-	96	47.709	ENSAPOG00000000866	lig4	69	47.709	Acanthochromis_polyacanthus
ENSCING00000009536	-	97	44.844	ENSAMEG00000019685	LIG4	69	44.844	Ailuropoda_melanoleuca
ENSCING00000009536	-	97	47.484	ENSACIG00000018309	lig4	69	47.484	Amphilophus_citrinellus
ENSCING00000009536	-	96	47.077	ENSAOCG00000011768	lig4	69	47.077	Amphiprion_ocellaris
ENSCING00000009536	-	96	47.235	ENSAPEG00000017815	lig4	69	47.235	Amphiprion_percula
ENSCING00000009536	-	99	47.473	ENSATEG00000005583	lig4	71	47.473	Anabas_testudineus
ENSCING00000009536	-	91	46.333	ENSAPLG00000001673	LIG4	68	46.333	Anas_platyrhynchos
ENSCING00000009536	-	96	46.264	ENSACAG00000014566	LIG4	69	46.264	Anolis_carolinensis
ENSCING00000009536	-	95	45.151	ENSANAG00000012446	LIG4	68	45.151	Aotus_nancymaae
ENSCING00000009536	-	97	47.642	ENSACLG00000027051	lig4	69	47.642	Astatotilapia_calliptera
ENSCING00000009536	-	99	46.012	ENSAMXG00000008192	lig4	67	46.012	Astyanax_mexicanus
ENSCING00000009536	-	95	47.218	ENSBTAG00000015868	LIG4	73	47.218	Bos_taurus
ENSCING00000009536	-	95	45.151	ENSCJAG00000014689	LIG4	68	45.151	Callithrix_jacchus
ENSCING00000009536	-	95	45.469	ENSCAFG00000006031	LIG4	68	45.469	Canis_familiaris
ENSCING00000009536	-	95	45.469	ENSCAFG00020021230	LIG4	68	45.469	Canis_lupus_dingo
ENSCING00000009536	-	95	47.059	ENSCHIG00000001019	LIG4	68	47.059	Capra_hircus
ENSCING00000009536	-	95	47.134	ENSCAPG00000006284	LIG4	69	47.134	Cavia_aperea
ENSCING00000009536	-	95	46.900	ENSCPOG00000014266	LIG4	68	46.900	Cavia_porcellus
ENSCING00000009536	-	95	45.628	ENSCCAG00000019971	LIG4	68	45.628	Cebus_capucinus
ENSCING00000009536	-	95	45.151	ENSCATG00000021075	LIG4	68	45.151	Cercocebus_atys
ENSCING00000009536	-	96	46.667	ENSCLAG00000003376	LIG4	68	46.667	Chinchilla_lanigera
ENSCING00000009536	-	95	45.151	ENSCSAG00000000211	LIG4	68	45.151	Chlorocebus_sabaeus
ENSCING00000009536	-	96	46.434	ENSCPBG00000023291	LIG4	69	45.950	Chrysemys_picta_bellii
ENSCING00000009536	-	99	80.989	ENSCSAVG00000010336	-	84	80.989	Ciona_savignyi
ENSCING00000009536	-	95	44.833	ENSCANG00000005805	LIG4	68	44.833	Colobus_angolensis_palliatus
ENSCING00000009536	-	96	46.117	ENSCGRG00001012072	Lig4	68	46.117	Cricetulus_griseus_chok1gshd
ENSCING00000009536	-	96	46.117	ENSCGRG00000013417	Lig4	68	46.117	Cricetulus_griseus_crigri
ENSCING00000009536	-	99	46.341	ENSCSEG00000013905	lig4	70	46.341	Cynoglossus_semilaevis
ENSCING00000009536	-	97	47.724	ENSCVAG00000007896	lig4	69	47.724	Cyprinodon_variegatus
ENSCING00000009536	-	97	46.614	ENSDARG00000060620	lig4	69	46.614	Danio_rerio
ENSCING00000009536	-	94	45.645	ENSDNOG00000000513	LIG4	69	45.611	Dasypus_novemcinctus
ENSCING00000009536	-	95	45.628	ENSDORG00000027303	Lig4	68	45.628	Dipodomys_ordii
ENSCING00000009536	-	96	31.071	FBgn0030506	Lig4	70	31.071	Drosophila_melanogaster
ENSCING00000009536	-	93	44.517	ENSETEG00000015563	LIG4	69	44.019	Echinops_telfairi
ENSCING00000009536	-	97	41.159	ENSEBUG00000014243	lig4	70	41.159	Eptatretus_burgeri
ENSCING00000009536	-	95	45.469	ENSEASG00005022073	LIG4	68	45.469	Equus_asinus_asinus
ENSCING00000009536	-	95	45.628	ENSECAG00000003257	LIG4	68	45.628	Equus_caballus
ENSCING00000009536	-	95	46.411	ENSELUG00000006787	lig4	69	46.288	Esox_lucius
ENSCING00000009536	-	97	45.070	ENSFCAG00000031985	LIG4	69	45.070	Felis_catus
ENSCING00000009536	-	96	45.800	ENSFALG00000004214	LIG4	76	45.800	Ficedula_albicollis
ENSCING00000009536	-	95	45.787	ENSFDAG00000008973	LIG4	68	45.787	Fukomys_damarensis
ENSCING00000009536	-	96	47.551	ENSFHEG00000007398	lig4	62	47.551	Fundulus_heteroclitus
ENSCING00000009536	-	93	45.261	ENSGMOG00000012843	lig4	81	44.427	Gadus_morhua
ENSCING00000009536	-	97	45.639	ENSGALG00000016854	LIG4	70	45.639	Gallus_gallus
ENSCING00000009536	-	96	47.310	ENSGAFG00000019779	lig4	68	46.832	Gambusia_affinis
ENSCING00000009536	-	99	45.917	ENSGACG00000014135	lig4	71	45.917	Gasterosteus_aculeatus
ENSCING00000009536	-	95	45.151	ENSGGOG00000027771	LIG4	68	45.151	Gorilla_gorilla
ENSCING00000009536	-	97	47.642	ENSHBUG00000006245	lig4	69	47.642	Haplochromis_burtoni
ENSCING00000009536	-	95	46.105	ENSHGLG00000000718	LIG4	68	46.105	Heterocephalus_glaber_female
ENSCING00000009536	-	95	46.105	ENSHGLG00100003265	LIG4	68	46.105	Heterocephalus_glaber_male
ENSCING00000009536	-	96	46.445	ENSHCOG00000012010	lig4	69	46.445	Hippocampus_comes
ENSCING00000009536	-	97	45.669	ENSIPUG00000013748	lig4	69	45.669	Ictalurus_punctatus
ENSCING00000009536	-	95	45.946	ENSSTOG00000024303	LIG4	68	45.946	Ictidomys_tridecemlineatus
ENSCING00000009536	-	95	45.280	ENSJJAG00000006750	Lig4	68	45.325	Jaculus_jaculus
ENSCING00000009536	-	99	45.636	ENSKMAG00000001149	lig4	71	45.636	Kryptolebias_marmoratus
ENSCING00000009536	-	86	48.673	ENSLBEG00000014578	lig4	67	48.673	Labrus_bergylta
ENSCING00000009536	-	97	46.614	ENSLACG00000003282	LIG4	69	46.614	Latimeria_chalumnae
ENSCING00000009536	-	97	47.642	ENSLOCG00000008901	lig4	68	47.642	Lepisosteus_oculatus
ENSCING00000009536	-	96	44.741	ENSLAFG00000031152	LIG4	69	44.741	Loxodonta_africana
ENSCING00000009536	-	95	45.151	ENSMFAG00000037235	LIG4	68	45.151	Macaca_fascicularis
ENSCING00000009536	-	95	44.992	ENSMMUG00000008874	LIG4	68	44.992	Macaca_mulatta
ENSCING00000009536	-	95	45.151	ENSMNEG00000023575	LIG4	68	45.151	Macaca_nemestrina
ENSCING00000009536	-	95	45.151	ENSMLEG00000026720	LIG4	68	45.151	Mandrillus_leucophaeus
ENSCING00000009536	-	99	45.732	ENSMAMG00000008472	lig4	70	45.732	Mastacembelus_armatus
ENSCING00000009536	-	97	47.642	ENSMZEG00005001855	lig4	69	47.642	Maylandia_zebra
ENSCING00000009536	-	96	45.959	ENSMGAG00000015532	LIG4	68	45.959	Meleagris_gallopavo
ENSCING00000009536	-	96	45.642	ENSMOCG00000019000	Lig4	68	45.642	Microtus_ochrogaster
ENSCING00000009536	-	96	47.235	ENSMMOG00000004390	lig4	69	47.235	Mola_mola
ENSCING00000009536	-	93	45.440	ENSMODG00000025064	LIG4	69	44.724	Monodelphis_domestica
ENSCING00000009536	-	97	46.875	ENSMALG00000008555	lig4	70	46.875	Monopterus_albus
ENSCING00000009536	-	97	45.212	MGP_CAROLIEiJ_G0030809	Lig4	69	45.212	Mus_caroli
ENSCING00000009536	-	97	45.683	ENSMUSG00000049717	Lig4	69	45.683	Mus_musculus
ENSCING00000009536	-	97	46.009	MGP_PahariEiJ_G0021270	Lig4	69	46.009	Mus_pahari
ENSCING00000009536	-	97	45.683	MGP_SPRETEiJ_G0031917	Lig4	69	45.683	Mus_spretus
ENSCING00000009536	-	95	45.541	ENSMPUG00000018675	LIG4	68	45.541	Mustela_putorius_furo
ENSCING00000009536	-	95	45.946	ENSMLUG00000001267	LIG4	68	45.946	Myotis_lucifugus
ENSCING00000009536	-	95	45.946	ENSNGAG00000013258	Lig4	68	45.946	Nannospalax_galili
ENSCING00000009536	-	97	47.484	ENSNBRG00000021252	lig4	69	47.484	Neolamprologus_brichardi
ENSCING00000009536	-	95	45.310	ENSNLEG00000007888	LIG4	68	45.310	Nomascus_leucogenys
ENSCING00000009536	-	96	44.340	ENSOPRG00000005765	LIG4	69	44.340	Ochotona_princeps
ENSCING00000009536	-	95	45.907	ENSODEG00000019683	LIG4	68	45.946	Octodon_degus
ENSCING00000009536	-	97	47.799	ENSONIG00000011969	lig4	68	47.799	Oreochromis_niloticus
ENSCING00000009536	-	96	45.238	ENSOCUG00000015734	LIG4	68	45.238	Oryctolagus_cuniculus
ENSCING00000009536	-	94	49.111	ENSORLG00000004041	lig4	69	48.594	Oryzias_latipes
ENSCING00000009536	-	94	48.950	ENSORLG00020019607	lig4	69	48.438	Oryzias_latipes_hni
ENSCING00000009536	-	94	48.950	ENSORLG00015017754	lig4	69	48.438	Oryzias_latipes_hsok
ENSCING00000009536	-	96	48.428	ENSOMEG00000003459	lig4	91	48.428	Oryzias_melastigma
ENSCING00000009536	-	95	45.295	ENSOGAG00000032120	LIG4	68	45.295	Otolemur_garnettii
ENSCING00000009536	-	95	47.059	ENSOARG00000005590	LIG4	82	47.059	Ovis_aries
ENSCING00000009536	-	95	44.992	ENSPPAG00000032998	LIG4	68	44.992	Pan_paniscus
ENSCING00000009536	-	97	45.383	ENSPPRG00000017804	LIG4	69	45.383	Panthera_pardus
ENSCING00000009536	-	97	45.383	ENSPTIG00000010051	LIG4	69	45.383	Panthera_tigris_altaica
ENSCING00000009536	-	95	45.151	ENSPTRG00000006025	LIG4	68	45.151	Pan_troglodytes
ENSCING00000009536	-	95	45.310	ENSPANG00000007562	LIG4	68	45.310	Papio_anubis
ENSCING00000009536	-	98	46.958	ENSPKIG00000011645	lig4	69	46.958	Paramormyrops_kingsleyae
ENSCING00000009536	-	96	46.508	ENSPSIG00000001504	LIG4	68	46.508	Pelodiscus_sinensis
ENSCING00000009536	-	94	46.829	ENSPMGG00000013486	lig4	71	46.248	Periophthalmus_magnuspinnatus
ENSCING00000009536	-	96	45.166	ENSPEMG00000000076	Lig4	68	45.166	Peromyscus_maniculatus_bairdii
ENSCING00000009536	-	96	44.567	ENSPCIG00000021882	LIG4	69	44.567	Phascolarctos_cinereus
ENSCING00000009536	-	96	47.310	ENSPFOG00000000797	lig4	70	46.832	Poecilia_formosa
ENSCING00000009536	-	96	47.310	ENSPLAG00000001196	lig4	70	46.832	Poecilia_latipinna
ENSCING00000009536	-	96	47.310	ENSPMEG00000021353	lig4	70	46.832	Poecilia_mexicana
ENSCING00000009536	-	96	47.468	ENSPREG00000007323	lig4	70	46.986	Poecilia_reticulata
ENSCING00000009536	-	95	45.469	ENSPPYG00000005540	LIG4	68	45.469	Pongo_abelii
ENSCING00000009536	-	95	45.310	ENSPVAG00000016403	LIG4	68	45.310	Pteropus_vampyrus
ENSCING00000009536	-	99	47.095	ENSPNYG00000009660	lig4	70	47.095	Pundamilia_nyererei
ENSCING00000009536	-	97	46.226	ENSPNAG00000028056	lig4	70	46.226	Pygocentrus_nattereri
ENSCING00000009536	-	97	46.226	ENSPNAG00000028069	LIG4	70	46.226	Pygocentrus_nattereri
ENSCING00000009536	-	96	46.434	ENSRNOG00000014605	Lig4	68	46.434	Rattus_norvegicus
ENSCING00000009536	-	95	44.498	ENSRBIG00000039962	LIG4	68	44.498	Rhinopithecus_bieti
ENSCING00000009536	-	95	44.992	ENSRROG00000006040	LIG4	68	44.992	Rhinopithecus_roxellana
ENSCING00000009536	-	95	45.310	ENSSBOG00000019029	LIG4	68	45.310	Saimiri_boliviensis_boliviensis
ENSCING00000009536	-	95	44.089	ENSSHAG00000009525	LIG4	69	43.994	Sarcophilus_harrisii
ENSCING00000009536	-	99	47.304	ENSSFOG00015012835	lig4	70	47.304	Scleropages_formosus
ENSCING00000009536	-	98	47.040	ENSSMAG00000011267	lig4	72	47.040	Scophthalmus_maximus
ENSCING00000009536	-	97	46.614	ENSSDUG00000010343	lig4	69	46.614	Seriola_dumerili
ENSCING00000009536	-	97	45.440	ENSSLDG00000003239	lig4	68	45.440	Seriola_lalandi_dorsalis
ENSCING00000009536	-	96	45.512	ENSSARG00000006573	LIG4	69	45.512	Sorex_araneus
ENSCING00000009536	-	86	47.163	ENSSPUG00000002444	LIG4	67	47.193	Sphenodon_punctatus
ENSCING00000009536	-	97	46.855	ENSSPAG00000001609	lig4	69	46.855	Stegastes_partitus
ENSCING00000009536	-	94	45.968	ENSSSCG00000009540	LIG4	69	45.827	Sus_scrofa
ENSCING00000009536	-	96	45.325	ENSTGUG00000010795	LIG4	69	45.325	Taeniopygia_guttata
ENSCING00000009536	-	97	47.717	ENSTRUG00000009984	lig4	69	47.717	Takifugu_rubripes
ENSCING00000009536	-	97	46.772	ENSTNIG00000010348	lig4	70	47.717	Tetraodon_nigroviridis
ENSCING00000009536	-	95	45.787	ENSTBEG00000017741	LIG4	68	45.787	Tupaia_belangeri
ENSCING00000009536	-	95	45.628	ENSTTRG00000012660	LIG4	68	45.628	Tursiops_truncatus
ENSCING00000009536	-	95	45.223	ENSUAMG00000003773	LIG4	68	45.223	Ursus_americanus
ENSCING00000009536	-	97	46.395	ENSXETG00000002654	lig4	69	46.395	Xenopus_tropicalis
ENSCING00000009536	-	96	47.152	ENSXCOG00000017401	lig4	69	47.327	Xiphophorus_couchianus
ENSCING00000009536	-	96	47.468	ENSXMAG00000015142	lig4	69	47.642	Xiphophorus_maculatus