EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000010099 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5299 bases
Position: chr2:5169920-5175218
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000020219	EST1_DNA_bind	PF10373.9	2.6e-12	1	1
ENSCINP00000020219	PIN_4	PF13638.6	1.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000020219	-	1689	-	ENSCINP00000020219	485 (aa)	-	F6PIQ0

Gene Model

Click here to download ENSCING00000010099's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000010099's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000010099	-	99	35.305	ENSG00000070366	SMG6	99	34.951	Homo_sapiens
ENSCING00000010099	-	99	35.373	ENSTSYG00000003406	SMG6	99	34.942	Carlito_syrichta
ENSCING00000010099	-	99	35.260	ENSCPOG00000014878	SMG6	70	34.884	Cavia_porcellus
ENSCING00000010099	-	99	34.933	ENSCLAG00000006748	SMG6	68	34.682	Chinchilla_lanigera
ENSCING00000010099	-	53	76.806	ENSCSAVG00000007638	-	98	76.806	Ciona_savignyi
ENSCING00000010099	-	99	35.182	ENSCANG00000031764	SMG6	99	34.749	Colobus_angolensis_palliatus
ENSCING00000010099	-	99	35.115	ENSDORG00000016614	Smg6	68	35.260	Dipodomys_ordii
ENSCING00000010099	-	99	34.990	ENSFDAG00000015106	SMG6	68	34.682	Fukomys_damarensis
ENSCING00000010099	-	99	35.429	ENSHGLG00000012882	SMG6	68	34.104	Heterocephalus_glaber_female
ENSCING00000010099	-	99	35.429	ENSHGLG00100017815	SMG6	68	34.104	Heterocephalus_glaber_male
ENSCING00000010099	-	99	35.305	ENSSTOG00000028127	SMG6	68	35.260	Ictidomys_tridecemlineatus
ENSCING00000010099	-	81	38.686	ENSLACG00000003276	SMG6	91	42.857	Latimeria_chalumnae
ENSCING00000010099	-	72	39.037	ENSMGAG00000017200	-	99	39.037	Meleagris_gallopavo
ENSCING00000010099	-	99	35.305	MGP_CAROLIEiJ_G0016729	Smg6	68	35.260	Mus_caroli
ENSCING00000010099	-	99	35.385	ENSMUSG00000038290	Smg6	68	35.260	Mus_musculus
ENSCING00000010099	-	99	35.385	MGP_PahariEiJ_G0017866	Smg6	68	35.260	Mus_pahari
ENSCING00000010099	-	99	35.305	MGP_SPRETEiJ_G0017572	Smg6	68	35.260	Mus_spretus
ENSCING00000010099	-	99	35.385	ENSNGAG00000007287	Smg6	68	35.260	Nannospalax_galili
ENSCING00000010099	-	99	35.373	ENSNLEG00000017171	SMG6	99	34.942	Nomascus_leucogenys
ENSCING00000010099	-	99	35.192	ENSPTIG00000008925	SMG6	99	34.563	Panthera_tigris_altaica
ENSCING00000010099	-	99	35.305	ENSPTRG00000008544	SMG6	99	34.951	Pan_troglodytes
ENSCING00000010099	-	99	35.305	ENSPEMG00000020707	Smg6	69	35.260	Peromyscus_maniculatus_bairdii
ENSCING00000010099	-	99	34.990	ENSRROG00000030423	SMG6	99	34.556	Rhinopithecus_roxellana