EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000010654 (Gene tree)
Gene ID: -
Gene Symbol: yb1/2/3
Alias: Ci-YB1/2/3
Full Name: Ciona intestinalis Y-box protein 1/2/3 (yb1/2/3)%2C mRNA.
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 6174 bases
Position: chr1:3315684-3321857
Accession: NM_001078542
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000010620	CSD	PF00313.22	3.1e-23	1	1
ENSCINP00000021107	CSD	PF00313.22	4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000010620	-	1609	XM_009863810	ENSCINP00000010620	273 (aa)	XP_009862112	Q4H2L7
ENSCINT00000021107	-	1750	XM_009863809	ENSCINP00000021107	320 (aa)	XP_009862111	F6SD85

Gene Model

Click here to download ENSCING00000010654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000010654's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000010654	yb1/2/3	56	43.396	ENSANAG00000033366	-	58	40.805	Aotus_nancymaae
ENSCING00000010654	yb1/2/3	73	49.767	ENSANAG00000024492	-	61	54.545	Aotus_nancymaae
ENSCING00000010654	yb1/2/3	73	49.767	ENSCJAG00000021660	-	61	54.011	Callithrix_jacchus
ENSCING00000010654	yb1/2/3	73	53.140	ENSTSYG00000035821	-	56	53.488	Carlito_syrichta
ENSCING00000010654	yb1/2/3	50	64.706	ENSCCAG00000016469	YBX3	61	54.011	Cebus_capucinus
ENSCING00000010654	yb1/2/3	73	49.767	ENSCATG00000034411	YBX3	56	57.558	Cercocebus_atys
ENSCING00000010654	yb1/2/3	83	67.528	ENSCSAVG00000003053	-	81	63.469	Ciona_savignyi
ENSCING00000010654	yb1/2/3	73	50.000	ENSCANG00000036801	YBX3	75	54.011	Colobus_angolensis_palliatus
ENSCING00000010654	yb1/2/3	73	50.679	ENSCGRG00001016148	Ybx3	57	56.818	Cricetulus_griseus_chok1gshd
ENSCING00000010654	yb1/2/3	50	58.394	ENSECAG00000013777	YBX3	55	53.488	Equus_caballus
ENSCING00000010654	yb1/2/3	63	54.913	ENSHGLG00100003589	YBX3	66	56.805	Heterocephalus_glaber_male
ENSCING00000010654	yb1/2/3	73	49.767	ENSMFAG00000039369	YBX3	56	57.558	Macaca_fascicularis
ENSCING00000010654	yb1/2/3	73	49.767	ENSMNEG00000045109	YBX3	56	57.558	Macaca_nemestrina
ENSCING00000010654	yb1/2/3	72	49.528	ENSMLEG00000033618	YBX3	58	57.738	Mandrillus_leucophaeus
ENSCING00000010654	yb1/2/3	56	62.025	ENSMAUG00000012185	Ybx3	66	59.884	Mesocricetus_auratus
ENSCING00000010654	yb1/2/3	73	50.679	ENSMOCG00000016291	Ybx3	71	58.140	Microtus_ochrogaster
ENSCING00000010654	yb1/2/3	73	54.673	MGP_CAROLIEiJ_G0028947	Ybx3	57	56.818	Mus_caroli
ENSCING00000010654	yb1/2/3	73	54.673	ENSMUSG00000030189	Ybx3	57	58.140	Mus_musculus
ENSCING00000010654	yb1/2/3	73	54.673	MGP_PahariEiJ_G0022709	Ybx3	57	56.818	Mus_pahari
ENSCING00000010654	yb1/2/3	73	54.673	MGP_SPRETEiJ_G0029994	Ybx3	57	56.818	Mus_spretus
ENSCING00000010654	yb1/2/3	56	55.280	ENSNLEG00000034844	YBX3	64	49.198	Nomascus_leucogenys
ENSCING00000010654	yb1/2/3	73	49.767	ENSPANG00000010280	YBX3	56	57.558	Papio_anubis
ENSCING00000010654	yb1/2/3	56	56.983	ENSPEMG00000012132	-	67	56.818	Peromyscus_maniculatus_bairdii
ENSCING00000010654	yb1/2/3	62	52.500	ENSPEMG00000010391	-	67	58.140	Peromyscus_maniculatus_bairdii
ENSCING00000010654	yb1/2/3	55	61.783	ENSRNOG00000005480	Ybx3	57	57.143	Rattus_norvegicus
ENSCING00000010654	yb1/2/3	73	49.767	ENSRBIG00000039208	YBX3	61	54.011	Rhinopithecus_bieti
ENSCING00000010654	yb1/2/3	73	49.767	ENSRROG00000029638	YBX3	61	54.011	Rhinopithecus_roxellana
ENSCING00000010654	yb1/2/3	51	63.571	ENSSPUG00000009911	-	58	69.048	Sphenodon_punctatus
ENSCING00000010654	yb1/2/3	52	63.946	ENSXETG00000016239	ybx3	50	68.800	Xenopus_tropicalis