EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000011417 (Gene tree)
Gene ID: 100178283
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerases I%2C II%2C and III subunit RPABC3-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1411 bases
Position: chr2:4768036-4769446
Accession: 100178283
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000021822	RNA_pol_Rpb8	PF03870.15	4.7e-56	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000022068	-	737	-	ENSCINP00000021822	152 (aa)	XP_002122918	F7AX45

Gene Model

Click here to download ENSCING00000011417's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000011417's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000011417	-	99	75.333	ENSG00000163882	POLR2H	99	75.333	Homo_sapiens
ENSCING00000011417	-	99	74.000	ENSAPOG00000023660	polr2h	99	74.000	Acanthochromis_polyacanthus
ENSCING00000011417	-	99	75.333	ENSAMEG00000017011	POLR2H	99	75.333	Ailuropoda_melanoleuca
ENSCING00000011417	-	76	70.435	ENSACIG00000013167	polr2h	100	70.435	Amphilophus_citrinellus
ENSCING00000011417	-	99	74.000	ENSAOCG00000003084	polr2h	99	74.000	Amphiprion_ocellaris
ENSCING00000011417	-	99	74.000	ENSAPEG00000002614	polr2h	99	74.000	Amphiprion_percula
ENSCING00000011417	-	99	74.000	ENSATEG00000013227	polr2h	99	74.000	Anabas_testudineus
ENSCING00000011417	-	99	75.333	ENSACAG00000002828	POLR2H	99	75.333	Anolis_carolinensis
ENSCING00000011417	-	99	75.333	ENSANAG00000020244	POLR2H	99	75.333	Aotus_nancymaae
ENSCING00000011417	-	99	74.000	ENSACLG00000026253	polr2h	99	74.000	Astatotilapia_calliptera
ENSCING00000011417	-	99	74.667	ENSAMXG00000001800	polr2h	99	74.667	Astyanax_mexicanus
ENSCING00000011417	-	99	75.333	ENSBTAG00000040199	POLR2H	99	75.333	Bos_taurus
ENSCING00000011417	-	99	62.000	WBGene00017830	rpb-8	99	62.000	Caenorhabditis_elegans
ENSCING00000011417	-	99	75.333	ENSCJAG00000014959	POLR2H	99	75.333	Callithrix_jacchus
ENSCING00000011417	-	99	75.333	ENSCAFG00020002558	POLR2H	99	75.333	Canis_lupus_dingo
ENSCING00000011417	-	99	75.333	ENSCHIG00000006695	POLR2H	99	75.333	Capra_hircus
ENSCING00000011417	-	99	65.333	ENSTSYG00000031988	-	99	65.333	Carlito_syrichta
ENSCING00000011417	-	99	75.333	ENSTSYG00000007705	-	99	75.333	Carlito_syrichta
ENSCING00000011417	-	99	70.667	ENSTSYG00000031691	-	81	70.667	Carlito_syrichta
ENSCING00000011417	-	99	74.667	ENSCPOG00000040303	POLR2H	99	74.667	Cavia_porcellus
ENSCING00000011417	-	99	75.333	ENSCCAG00000035087	POLR2H	99	75.333	Cebus_capucinus
ENSCING00000011417	-	99	75.333	ENSCATG00000045313	POLR2H	99	75.333	Cercocebus_atys
ENSCING00000011417	-	99	74.667	ENSCLAG00000013016	POLR2H	99	74.667	Chinchilla_lanigera
ENSCING00000011417	-	99	75.333	ENSCSAG00000013724	POLR2H	80	75.333	Chlorocebus_sabaeus
ENSCING00000011417	-	73	72.973	ENSCHOG00000009216	POLR2H	99	72.973	Choloepus_hoffmanni
ENSCING00000011417	-	99	75.333	ENSCPBG00000001462	POLR2H	99	75.333	Chrysemys_picta_bellii
ENSCING00000011417	-	100	96.711	ENSCSAVG00000006151	-	100	96.711	Ciona_savignyi
ENSCING00000011417	-	99	75.333	ENSCANG00000023708	POLR2H	99	75.333	Colobus_angolensis_palliatus
ENSCING00000011417	-	99	75.333	ENSCGRG00001004900	Polr2h	99	75.333	Cricetulus_griseus_chok1gshd
ENSCING00000011417	-	99	75.333	ENSCGRG00000014304	Polr2h	99	75.333	Cricetulus_griseus_crigri
ENSCING00000011417	-	99	72.667	ENSCSEG00000015264	polr2h	99	72.667	Cynoglossus_semilaevis
ENSCING00000011417	-	99	74.667	ENSCVAG00000012410	polr2h	99	74.667	Cyprinodon_variegatus
ENSCING00000011417	-	99	74.667	ENSDARG00000038505	polr2h	99	74.667	Danio_rerio
ENSCING00000011417	-	99	75.333	ENSDNOG00000044402	POLR2H	99	75.333	Dasypus_novemcinctus
ENSCING00000011417	-	99	75.333	ENSDORG00000027475	Polr2h	99	75.333	Dipodomys_ordii
ENSCING00000011417	-	99	76.667	FBgn0037121	Rpb8	99	76.667	Drosophila_melanogaster
ENSCING00000011417	-	59	82.609	ENSETEG00000004231	-	59	82.609	Echinops_telfairi
ENSCING00000011417	-	99	63.429	ENSEBUG00000008233	POLR2H	99	63.429	Eptatretus_burgeri
ENSCING00000011417	-	99	75.333	ENSEASG00005013088	POLR2H	99	75.333	Equus_asinus_asinus
ENSCING00000011417	-	99	75.333	ENSECAG00000005828	POLR2H	99	75.333	Equus_caballus
ENSCING00000011417	-	50	77.632	ENSEEUG00000006139	-	92	77.632	Erinaceus_europaeus
ENSCING00000011417	-	99	74.000	ENSELUG00000006347	polr2h	99	74.000	Esox_lucius
ENSCING00000011417	-	99	75.333	ENSFCAG00000007797	POLR2H	99	75.333	Felis_catus
ENSCING00000011417	-	99	75.333	ENSFALG00000008177	POLR2H	99	75.333	Ficedula_albicollis
ENSCING00000011417	-	99	75.333	ENSFDAG00000008781	POLR2H	99	75.333	Fukomys_damarensis
ENSCING00000011417	-	99	74.667	ENSFHEG00000017819	polr2h	99	74.667	Fundulus_heteroclitus
ENSCING00000011417	-	99	75.333	ENSGALG00000008534	POLR2H	99	75.333	Gallus_gallus
ENSCING00000011417	-	99	74.667	ENSGAFG00000015424	polr2h	99	74.667	Gambusia_affinis
ENSCING00000011417	-	99	74.667	ENSGACG00000009019	polr2h	99	74.667	Gasterosteus_aculeatus
ENSCING00000011417	-	99	75.333	ENSGAGG00000009016	POLR2H	99	75.333	Gopherus_agassizii
ENSCING00000011417	-	83	73.810	ENSGGOG00000002912	-	100	73.810	Gorilla_gorilla
ENSCING00000011417	-	99	74.000	ENSHBUG00000006685	polr2h	99	74.000	Haplochromis_burtoni
ENSCING00000011417	-	99	75.333	ENSHGLG00000012488	POLR2H	99	75.333	Heterocephalus_glaber_female
ENSCING00000011417	-	99	75.333	ENSHGLG00100009576	POLR2H	99	75.333	Heterocephalus_glaber_male
ENSCING00000011417	-	99	73.333	ENSHCOG00000010315	polr2h	99	73.333	Hippocampus_comes
ENSCING00000011417	-	99	73.333	ENSHCOG00000010338	polr2h	99	73.333	Hippocampus_comes
ENSCING00000011417	-	99	74.667	ENSIPUG00000024331	polr2h	99	74.667	Ictalurus_punctatus
ENSCING00000011417	-	99	75.333	ENSSTOG00000008300	POLR2H	99	75.333	Ictidomys_tridecemlineatus
ENSCING00000011417	-	99	75.333	ENSJJAG00000015574	Polr2h	99	75.333	Jaculus_jaculus
ENSCING00000011417	-	99	75.333	ENSKMAG00000008353	polr2h	99	75.333	Kryptolebias_marmoratus
ENSCING00000011417	-	99	74.000	ENSLBEG00000018905	polr2h	99	74.000	Labrus_bergylta
ENSCING00000011417	-	99	75.333	ENSLACG00000015017	POLR2H	99	75.333	Latimeria_chalumnae
ENSCING00000011417	-	74	71.429	ENSLOCG00000008946	polr2h	99	71.429	Lepisosteus_oculatus
ENSCING00000011417	-	99	75.333	ENSLAFG00000003573	POLR2H	99	75.333	Loxodonta_africana
ENSCING00000011417	-	99	75.333	ENSMFAG00000038115	POLR2H	99	75.333	Macaca_fascicularis
ENSCING00000011417	-	99	75.333	ENSMMUG00000007524	POLR2H	99	75.333	Macaca_mulatta
ENSCING00000011417	-	99	75.333	ENSMNEG00000037272	POLR2H	99	75.333	Macaca_nemestrina
ENSCING00000011417	-	99	75.333	ENSMLEG00000039827	POLR2H	99	75.333	Mandrillus_leucophaeus
ENSCING00000011417	-	100	73.026	ENSMAMG00000001923	polr2h	99	74.000	Mastacembelus_armatus
ENSCING00000011417	-	99	74.000	ENSMZEG00005017494	polr2h	99	74.000	Maylandia_zebra
ENSCING00000011417	-	99	75.333	ENSMAUG00000016338	Polr2h	99	75.333	Mesocricetus_auratus
ENSCING00000011417	-	99	75.333	ENSMICG00000048991	-	99	75.333	Microcebus_murinus
ENSCING00000011417	-	95	75.862	ENSMICG00000027485	-	94	75.862	Microcebus_murinus
ENSCING00000011417	-	99	57.333	ENSMICG00000033578	-	99	57.333	Microcebus_murinus
ENSCING00000011417	-	99	75.333	ENSMOCG00000004886	Polr2h	99	75.333	Microtus_ochrogaster
ENSCING00000011417	-	99	74.000	ENSMMOG00000008575	polr2h	99	74.000	Mola_mola
ENSCING00000011417	-	99	75.333	ENSMODG00000002570	POLR2H	99	75.333	Monodelphis_domestica
ENSCING00000011417	-	99	74.000	ENSMALG00000015108	polr2h	99	74.000	Monopterus_albus
ENSCING00000011417	-	99	75.333	MGP_CAROLIEiJ_G0020589	Polr2h	99	75.333	Mus_caroli
ENSCING00000011417	-	99	75.333	ENSMUSG00000021018	Polr2h	99	75.333	Mus_musculus
ENSCING00000011417	-	99	75.333	MGP_SPRETEiJ_G0021486	Polr2h	99	75.333	Mus_spretus
ENSCING00000011417	-	99	75.333	ENSMPUG00000002852	POLR2H	99	75.333	Mustela_putorius_furo
ENSCING00000011417	-	99	75.333	ENSMLUG00000022295	POLR2H	99	75.333	Myotis_lucifugus
ENSCING00000011417	-	99	75.333	ENSNGAG00000023997	-	99	75.333	Nannospalax_galili
ENSCING00000011417	-	99	56.667	ENSNGAG00000015806	-	99	56.667	Nannospalax_galili
ENSCING00000011417	-	99	74.000	ENSNBRG00000001133	polr2h	99	74.000	Neolamprologus_brichardi
ENSCING00000011417	-	99	75.333	ENSNLEG00000029447	POLR2H	99	75.333	Nomascus_leucogenys
ENSCING00000011417	-	60	71.429	ENSMEUG00000014141	-	100	71.429	Notamacropus_eugenii
ENSCING00000011417	-	50	78.947	ENSOPRG00000015024	-	92	78.947	Ochotona_princeps
ENSCING00000011417	-	99	74.667	ENSODEG00000013008	-	99	74.667	Octodon_degus
ENSCING00000011417	-	99	74.667	ENSODEG00000020005	-	99	74.667	Octodon_degus
ENSCING00000011417	-	99	74.000	ENSONIG00000012493	polr2h	99	74.000	Oreochromis_niloticus
ENSCING00000011417	-	99	75.333	ENSOANG00000010454	POLR2H	99	75.333	Ornithorhynchus_anatinus
ENSCING00000011417	-	99	75.333	ENSOCUG00000007078	POLR2H	99	75.333	Oryctolagus_cuniculus
ENSCING00000011417	-	99	74.000	ENSORLG00000023347	polr2h	99	74.000	Oryzias_latipes
ENSCING00000011417	-	99	74.000	ENSORLG00020017770	polr2h	99	74.000	Oryzias_latipes_hni
ENSCING00000011417	-	99	74.000	ENSORLG00015013505	polr2h	99	74.000	Oryzias_latipes_hsok
ENSCING00000011417	-	99	74.000	ENSOMEG00000021100	polr2h	99	74.000	Oryzias_melastigma
ENSCING00000011417	-	99	75.333	ENSOGAG00000001599	POLR2H	99	75.333	Otolemur_garnettii
ENSCING00000011417	-	99	75.333	ENSOARG00000020584	POLR2H	99	75.333	Ovis_aries
ENSCING00000011417	-	99	75.333	ENSPPAG00000035658	-	99	75.333	Pan_paniscus
ENSCING00000011417	-	99	75.333	ENSPPRG00000004001	POLR2H	99	75.333	Panthera_pardus
ENSCING00000011417	-	99	75.333	ENSPTIG00000010551	POLR2H	99	75.333	Panthera_tigris_altaica
ENSCING00000011417	-	99	75.333	ENSPTRG00000047600	-	99	60.667	Pan_troglodytes
ENSCING00000011417	-	99	75.333	ENSPANG00000020585	POLR2H	99	75.333	Papio_anubis
ENSCING00000011417	-	99	74.000	ENSPKIG00000022836	polr2h	99	74.000	Paramormyrops_kingsleyae
ENSCING00000011417	-	76	72.174	ENSPSIG00000017108	POLR2H	100	72.174	Pelodiscus_sinensis
ENSCING00000011417	-	99	74.000	ENSPMGG00000004693	polr2h	93	74.000	Periophthalmus_magnuspinnatus
ENSCING00000011417	-	99	75.333	ENSPMAG00000008230	-	99	75.333	Petromyzon_marinus
ENSCING00000011417	-	99	74.667	ENSPFOG00000024200	polr2h	99	74.667	Poecilia_formosa
ENSCING00000011417	-	99	74.667	ENSPLAG00000024033	polr2h	99	74.667	Poecilia_latipinna
ENSCING00000011417	-	99	74.667	ENSPMEG00000005909	polr2h	99	74.667	Poecilia_mexicana
ENSCING00000011417	-	99	74.667	ENSPREG00000007275	polr2h	99	74.667	Poecilia_reticulata
ENSCING00000011417	-	99	75.333	ENSPPYG00000014357	-	99	75.333	Pongo_abelii
ENSCING00000011417	-	99	54.667	ENSPCAG00000015035	-	99	54.667	Procavia_capensis
ENSCING00000011417	-	99	75.333	ENSPCOG00000021194	POLR2H	99	75.333	Propithecus_coquereli
ENSCING00000011417	-	99	64.000	ENSPVAG00000004869	POLR2H	99	64.000	Pteropus_vampyrus
ENSCING00000011417	-	99	74.000	ENSPNYG00000020592	polr2h	99	74.000	Pundamilia_nyererei
ENSCING00000011417	-	99	73.333	ENSPNAG00000010676	polr2h	99	73.333	Pygocentrus_nattereri
ENSCING00000011417	-	99	75.333	ENSRNOG00000049116	Polr2h	99	75.333	Rattus_norvegicus
ENSCING00000011417	-	99	75.333	ENSRNOG00000001748	LOC100912534	99	75.333	Rattus_norvegicus
ENSCING00000011417	-	99	75.333	ENSRBIG00000032148	POLR2H	99	75.333	Rhinopithecus_bieti
ENSCING00000011417	-	99	75.333	ENSRROG00000040465	POLR2H	99	75.333	Rhinopithecus_roxellana
ENSCING00000011417	-	97	35.294	YOR224C	RPB8	99	35.294	Saccharomyces_cerevisiae
ENSCING00000011417	-	99	75.333	ENSSBOG00000033101	POLR2H	99	60.667	Saimiri_boliviensis_boliviensis
ENSCING00000011417	-	84	74.016	ENSSHAG00000006304	POLR2H	91	74.016	Sarcophilus_harrisii
ENSCING00000011417	-	99	74.667	ENSSFOG00015014221	polr2h	99	74.667	Scleropages_formosus
ENSCING00000011417	-	99	74.000	ENSSMAG00000001049	polr2h	99	74.000	Scophthalmus_maximus
ENSCING00000011417	-	99	74.000	ENSSDUG00000005936	polr2h	99	74.000	Seriola_dumerili
ENSCING00000011417	-	99	74.000	ENSSLDG00000002246	polr2h	99	74.000	Seriola_lalandi_dorsalis
ENSCING00000011417	-	99	75.333	ENSSARG00000003429	POLR2H	99	75.333	Sorex_araneus
ENSCING00000011417	-	76	72.174	ENSSPUG00000014013	-	100	72.174	Sphenodon_punctatus
ENSCING00000011417	-	99	74.000	ENSSPAG00000012297	polr2h	99	74.000	Stegastes_partitus
ENSCING00000011417	-	99	75.333	ENSSSCG00000022507	POLR2H	99	75.333	Sus_scrofa
ENSCING00000011417	-	94	75.524	ENSTGUG00000010383	POLR2H	99	75.524	Taeniopygia_guttata
ENSCING00000011417	-	99	73.333	ENSTRUG00000007619	polr2h	99	73.333	Takifugu_rubripes
ENSCING00000011417	-	99	74.000	ENSTNIG00000012183	polr2h	99	74.000	Tetraodon_nigroviridis
ENSCING00000011417	-	59	81.579	ENSTBEG00000005571	-	59	81.579	Tupaia_belangeri
ENSCING00000011417	-	99	75.333	ENSTTRG00000011254	POLR2H	99	75.333	Tursiops_truncatus
ENSCING00000011417	-	99	75.333	ENSUAMG00000004615	POLR2H	99	75.333	Ursus_americanus
ENSCING00000011417	-	99	75.333	ENSUMAG00000005255	POLR2H	99	75.333	Ursus_maritimus
ENSCING00000011417	-	99	61.333	ENSVPAG00000009011	-	99	61.333	Vicugna_pacos
ENSCING00000011417	-	99	75.333	ENSVVUG00000012241	POLR2H	99	75.333	Vulpes_vulpes
ENSCING00000011417	-	99	74.000	ENSXETG00000017291	polr2h	99	74.000	Xenopus_tropicalis
ENSCING00000011417	-	99	74.667	ENSXCOG00000003501	polr2h	99	74.667	Xiphophorus_couchianus
ENSCING00000011417	-	99	74.667	ENSXMAG00000005861	polr2h	99	74.667	Xiphophorus_maculatus