EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000011474 (Gene tree)
Gene ID: 100182759
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 399 bases
Position: chr2:4293833-4294231
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000021902	RNA_pol_Rpb4	PF03874.16	3.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000022148	-	399	-	ENSCINP00000021902	133 (aa)	-	F6XIG6

Gene Model

Click here to download ENSCING00000011474's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000011474's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000011474	-	96	86.719	ENSG00000144231	POLR2D	99	87.379	Homo_sapiens
ENSCING00000011474	-	96	87.500	ENSAPOG00000023553	polr2d	89	87.500	Acanthochromis_polyacanthus
ENSCING00000011474	-	96	85.385	ENSAMEG00000011746	POLR2D	90	85.385	Ailuropoda_melanoleuca
ENSCING00000011474	-	96	87.500	ENSAOCG00000007295	polr2d	89	87.500	Amphiprion_ocellaris
ENSCING00000011474	-	96	87.500	ENSAPEG00000018714	polr2d	89	87.500	Amphiprion_percula
ENSCING00000011474	-	96	87.500	ENSATEG00000020416	polr2d	89	87.500	Anabas_testudineus
ENSCING00000011474	-	96	87.500	ENSACAG00000005255	POLR2D	90	87.500	Anolis_carolinensis
ENSCING00000011474	-	96	86.719	ENSANAG00000019959	POLR2D	90	86.719	Aotus_nancymaae
ENSCING00000011474	-	96	87.500	ENSACLG00000009919	polr2d	86	65.625	Astatotilapia_calliptera
ENSCING00000011474	-	96	86.719	ENSAMXG00000008954	polr2d	90	86.719	Astyanax_mexicanus
ENSCING00000011474	-	96	86.719	ENSBTAG00000053244	POLR2D	90	86.719	Bos_taurus
ENSCING00000011474	-	96	58.462	WBGene00018391	rpb-4	90	58.462	Caenorhabditis_elegans
ENSCING00000011474	-	96	86.719	ENSCJAG00000042216	-	90	86.719	Callithrix_jacchus
ENSCING00000011474	-	96	85.938	ENSCJAG00000021814	-	90	85.938	Callithrix_jacchus
ENSCING00000011474	-	96	86.719	ENSCAFG00000004311	POLR2D	90	86.719	Canis_familiaris
ENSCING00000011474	-	96	86.719	ENSCAFG00020003617	POLR2D	90	86.719	Canis_lupus_dingo
ENSCING00000011474	-	96	86.719	ENSCHIG00000025995	POLR2D	90	86.719	Capra_hircus
ENSCING00000011474	-	87	87.069	ENSTSYG00000036021	POLR2D	99	87.069	Carlito_syrichta
ENSCING00000011474	-	96	85.938	ENSCPOG00000002571	POLR2D	90	85.938	Cavia_porcellus
ENSCING00000011474	-	96	86.719	ENSCCAG00000037709	POLR2D	90	86.719	Cebus_capucinus
ENSCING00000011474	-	96	86.719	ENSCATG00000036749	POLR2D	90	86.719	Cercocebus_atys
ENSCING00000011474	-	96	85.938	ENSCLAG00000004449	POLR2D	90	85.938	Chinchilla_lanigera
ENSCING00000011474	-	96	86.719	ENSCSAG00000016861	POLR2D	90	86.719	Chlorocebus_sabaeus
ENSCING00000011474	-	87	87.931	ENSCHOG00000013850	POLR2D	99	87.931	Choloepus_hoffmanni
ENSCING00000011474	-	100	93.985	ENSCSAVG00000008353	-	92	93.985	Ciona_savignyi
ENSCING00000011474	-	96	86.719	ENSCANG00000043665	POLR2D	90	86.719	Colobus_angolensis_palliatus
ENSCING00000011474	-	96	86.719	ENSCGRG00001013608	Polr2d	90	86.719	Cricetulus_griseus_chok1gshd
ENSCING00000011474	-	87	87.931	ENSCGRG00000012624	Polr2d	99	87.931	Cricetulus_griseus_crigri
ENSCING00000011474	-	96	88.281	ENSCSEG00000006147	polr2d	89	88.281	Cynoglossus_semilaevis
ENSCING00000011474	-	99	84.848	ENSCVAG00000000779	polr2d	92	84.848	Cyprinodon_variegatus
ENSCING00000011474	-	96	87.500	ENSDARG00000076509	polr2d	91	87.500	Danio_rerio
ENSCING00000011474	-	96	86.719	ENSDNOG00000008527	POLR2D	90	86.719	Dasypus_novemcinctus
ENSCING00000011474	-	96	86.719	ENSDORG00000026897	Polr2d	90	86.719	Dipodomys_ordii
ENSCING00000011474	-	96	72.656	FBgn0263757	Rpb4	92	72.656	Drosophila_melanogaster
ENSCING00000011474	-	96	88.281	ENSEBUG00000007675	polr2d	90	88.281	Eptatretus_burgeri
ENSCING00000011474	-	96	86.719	ENSEASG00005007103	POLR2D	90	86.719	Equus_asinus_asinus
ENSCING00000011474	-	96	86.719	ENSECAG00000000556	POLR2D	90	86.719	Equus_caballus
ENSCING00000011474	-	96	87.500	ENSELUG00000005928	polr2d	90	87.500	Esox_lucius
ENSCING00000011474	-	96	86.719	ENSFCAG00000027816	POLR2D	90	86.719	Felis_catus
ENSCING00000011474	-	96	87.500	ENSFALG00000003528	POLR2D	90	87.500	Ficedula_albicollis
ENSCING00000011474	-	96	85.938	ENSFDAG00000007217	POLR2D	90	85.938	Fukomys_damarensis
ENSCING00000011474	-	96	87.500	ENSGMOG00000001823	polr2d	89	87.500	Gadus_morhua
ENSCING00000011474	-	96	87.500	ENSGALG00000002057	POLR2D	90	87.500	Gallus_gallus
ENSCING00000011474	-	99	85.606	ENSGAFG00000016932	polr2d	65	85.606	Gambusia_affinis
ENSCING00000011474	-	96	86.719	ENSGACG00000004639	polr2d	89	86.719	Gasterosteus_aculeatus
ENSCING00000011474	-	96	87.500	ENSGAGG00000021308	POLR2D	90	87.500	Gopherus_agassizii
ENSCING00000011474	-	96	86.719	ENSGGOG00000004723	POLR2D	90	86.719	Gorilla_gorilla
ENSCING00000011474	-	96	85.938	ENSHGLG00000016570	Polr2d	90	85.938	Heterocephalus_glaber_female
ENSCING00000011474	-	96	85.938	ENSHGLG00100013785	Polr2d	90	85.938	Heterocephalus_glaber_male
ENSCING00000011474	-	96	85.156	ENSHCOG00000006425	polr2d	90	85.156	Hippocampus_comes
ENSCING00000011474	-	96	87.500	ENSIPUG00000011192	polr2d	91	87.500	Ictalurus_punctatus
ENSCING00000011474	-	96	85.156	ENSSTOG00000023329	POLR2D	90	85.156	Ictidomys_tridecemlineatus
ENSCING00000011474	-	96	78.906	ENSJJAG00000000783	-	90	78.906	Jaculus_jaculus
ENSCING00000011474	-	87	82.759	ENSJJAG00000005723	-	93	82.759	Jaculus_jaculus
ENSCING00000011474	-	96	86.719	ENSJJAG00000015053	-	90	86.719	Jaculus_jaculus
ENSCING00000011474	-	88	88.889	ENSKMAG00000010677	polr2d	66	88.889	Kryptolebias_marmoratus
ENSCING00000011474	-	96	88.281	ENSLACG00000017253	POLR2D	90	88.281	Latimeria_chalumnae
ENSCING00000011474	-	96	86.719	ENSLOCG00000009106	polr2d	89	86.719	Lepisosteus_oculatus
ENSCING00000011474	-	96	86.719	ENSLAFG00000001848	POLR2D	90	86.719	Loxodonta_africana
ENSCING00000011474	-	96	86.719	ENSMFAG00000031937	POLR2D	90	86.719	Macaca_fascicularis
ENSCING00000011474	-	96	86.719	ENSMMUG00000001989	POLR2D	90	86.719	Macaca_mulatta
ENSCING00000011474	-	96	86.719	ENSMNEG00000035505	POLR2D	90	86.719	Macaca_nemestrina
ENSCING00000011474	-	96	86.719	ENSMLEG00000035827	POLR2D	90	86.719	Mandrillus_leucophaeus
ENSCING00000011474	-	96	87.500	ENSMGAG00000001248	POLR2D	90	87.500	Meleagris_gallopavo
ENSCING00000011474	-	96	85.938	ENSMAUG00000014518	Polr2d	90	85.938	Mesocricetus_auratus
ENSCING00000011474	-	96	86.719	ENSMICG00000009931	POLR2D	90	86.719	Microcebus_murinus
ENSCING00000011474	-	96	84.375	ENSMOCG00000019367	Polr2d	90	84.375	Microtus_ochrogaster
ENSCING00000011474	-	96	78.125	ENSMODG00000025026	-	90	78.125	Monodelphis_domestica
ENSCING00000011474	-	96	78.125	ENSMODG00000025027	-	90	78.125	Monodelphis_domestica
ENSCING00000011474	-	96	78.125	ENSMODG00000025028	-	90	78.125	Monodelphis_domestica
ENSCING00000011474	-	96	77.344	ENSMODG00000025029	-	90	77.344	Monodelphis_domestica
ENSCING00000011474	-	96	87.500	ENSMODG00000018653	-	90	87.500	Monodelphis_domestica
ENSCING00000011474	-	96	77.344	ENSMODG00000025035	-	90	77.344	Monodelphis_domestica
ENSCING00000011474	-	96	77.344	ENSMODG00000025034	-	90	77.344	Monodelphis_domestica
ENSCING00000011474	-	96	77.344	ENSMODG00000025036	-	90	77.344	Monodelphis_domestica
ENSCING00000011474	-	96	77.344	ENSMODG00000025031	-	90	77.344	Monodelphis_domestica
ENSCING00000011474	-	96	78.125	ENSMODG00000025030	-	90	78.125	Monodelphis_domestica
ENSCING00000011474	-	96	77.344	ENSMODG00000025033	-	90	77.344	Monodelphis_domestica
ENSCING00000011474	-	96	76.562	ENSMODG00000025032	-	90	76.562	Monodelphis_domestica
ENSCING00000011474	-	96	87.500	ENSMALG00000018266	polr2d	89	87.500	Monopterus_albus
ENSCING00000011474	-	96	86.719	MGP_CAROLIEiJ_G0022066	Polr2d	90	86.719	Mus_caroli
ENSCING00000011474	-	96	86.719	ENSMUSG00000024258	Polr2d	90	86.719	Mus_musculus
ENSCING00000011474	-	96	86.719	MGP_PahariEiJ_G0018800	Polr2d	90	86.719	Mus_pahari
ENSCING00000011474	-	96	86.719	MGP_SPRETEiJ_G0022977	Polr2d	90	86.719	Mus_spretus
ENSCING00000011474	-	96	86.719	ENSMPUG00000016685	POLR2D	90	86.719	Mustela_putorius_furo
ENSCING00000011474	-	88	88.034	ENSMLUG00000006862	POLR2D	99	88.034	Myotis_lucifugus
ENSCING00000011474	-	96	86.719	ENSNGAG00000014862	Polr2d	90	86.719	Nannospalax_galili
ENSCING00000011474	-	96	86.719	ENSNLEG00000027191	POLR2D	90	86.719	Nomascus_leucogenys
ENSCING00000011474	-	87	87.069	ENSOPRG00000005327	POLR2D	99	87.069	Ochotona_princeps
ENSCING00000011474	-	96	85.938	ENSODEG00000005262	POLR2D	90	85.938	Octodon_degus
ENSCING00000011474	-	96	87.500	ENSONIG00000017290	polr2d	89	87.500	Oreochromis_niloticus
ENSCING00000011474	-	88	88.889	ENSOANG00000013216	POLR2D	99	88.889	Ornithorhynchus_anatinus
ENSCING00000011474	-	96	85.156	ENSOCUG00000023403	-	90	85.156	Oryctolagus_cuniculus
ENSCING00000011474	-	96	79.845	ENSOCUG00000021449	-	90	79.845	Oryctolagus_cuniculus
ENSCING00000011474	-	96	86.719	ENSORLG00000005266	polr2d	89	86.719	Oryzias_latipes
ENSCING00000011474	-	96	86.719	ENSORLG00020006647	polr2d	89	86.719	Oryzias_latipes_hni
ENSCING00000011474	-	96	86.719	ENSORLG00015003222	polr2d	89	86.719	Oryzias_latipes_hsok
ENSCING00000011474	-	96	86.719	ENSOMEG00000018915	polr2d	89	86.719	Oryzias_melastigma
ENSCING00000011474	-	96	85.385	ENSOGAG00000017118	POLR2D	90	85.385	Otolemur_garnettii
ENSCING00000011474	-	96	86.719	ENSOARG00000015995	POLR2D	90	86.719	Ovis_aries
ENSCING00000011474	-	96	86.719	ENSPPRG00000020222	POLR2D	90	86.719	Panthera_pardus
ENSCING00000011474	-	96	86.719	ENSPTIG00000018618	POLR2D	90	86.719	Panthera_tigris_altaica
ENSCING00000011474	-	96	86.719	ENSPTRG00000012436	POLR2D	90	86.719	Pan_troglodytes
ENSCING00000011474	-	96	86.719	ENSPANG00000018602	POLR2D	90	86.719	Papio_anubis
ENSCING00000011474	-	99	84.848	ENSPKIG00000012166	polr2d	92	84.848	Paramormyrops_kingsleyae
ENSCING00000011474	-	88	88.889	ENSPSIG00000002873	POLR2D	99	88.889	Pelodiscus_sinensis
ENSCING00000011474	-	96	86.719	ENSPEMG00000018244	Polr2d	90	86.719	Peromyscus_maniculatus_bairdii
ENSCING00000011474	-	96	84.375	ENSPMAG00000005021	polr2d	90	84.375	Petromyzon_marinus
ENSCING00000011474	-	99	85.606	ENSPFOG00000008969	polr2d	92	85.606	Poecilia_formosa
ENSCING00000011474	-	99	85.606	ENSPLAG00000017210	polr2d	92	85.606	Poecilia_latipinna
ENSCING00000011474	-	99	85.606	ENSPMEG00000005160	polr2d	92	85.606	Poecilia_mexicana
ENSCING00000011474	-	77	88.350	ENSPREG00000021862	polr2d	99	88.350	Poecilia_reticulata
ENSCING00000011474	-	96	86.719	ENSPPYG00000012759	POLR2D	90	86.719	Pongo_abelii
ENSCING00000011474	-	96	86.719	ENSPCAG00000001396	POLR2D	90	86.719	Procavia_capensis
ENSCING00000011474	-	96	86.719	ENSPCOG00000022076	POLR2D	90	86.719	Propithecus_coquereli
ENSCING00000011474	-	96	86.719	ENSPVAG00000004002	POLR2D	90	86.719	Pteropus_vampyrus
ENSCING00000011474	-	96	87.500	ENSPNAG00000018246	polr2d	90	87.500	Pygocentrus_nattereri
ENSCING00000011474	-	96	86.719	ENSRNOG00000016231	Polr2d	90	86.719	Rattus_norvegicus
ENSCING00000011474	-	96	86.719	ENSRBIG00000039326	POLR2D	90	86.719	Rhinopithecus_bieti
ENSCING00000011474	-	96	86.719	ENSRROG00000023289	POLR2D	90	86.719	Rhinopithecus_roxellana
ENSCING00000011474	-	96	87.500	ENSSHAG00000014817	-	90	87.500	Sarcophilus_harrisii
ENSCING00000011474	-	96	87.500	ENSSFOG00015024204	polr2d	89	87.500	Scleropages_formosus
ENSCING00000011474	-	96	88.281	ENSSDUG00000006060	polr2d	89	88.281	Seriola_dumerili
ENSCING00000011474	-	96	88.281	ENSSLDG00000024485	polr2d	88	88.281	Seriola_lalandi_dorsalis
ENSCING00000011474	-	87	87.069	ENSSARG00000009037	POLR2D	99	87.069	Sorex_araneus
ENSCING00000011474	-	96	87.500	ENSSPUG00000014915	POLR2D	90	87.500	Sphenodon_punctatus
ENSCING00000011474	-	96	87.500	ENSSPAG00000013386	polr2d	89	87.500	Stegastes_partitus
ENSCING00000011474	-	96	86.719	ENSSSCG00000039230	POLR2D	90	86.719	Sus_scrofa
ENSCING00000011474	-	96	87.500	ENSTGUG00000005773	POLR2D	90	87.500	Taeniopygia_guttata
ENSCING00000011474	-	96	85.938	ENSTRUG00000004740	polr2d	90	85.938	Takifugu_rubripes
ENSCING00000011474	-	96	87.500	ENSTNIG00000011210	polr2d	90	87.500	Tetraodon_nigroviridis
ENSCING00000011474	-	87	87.931	ENSTBEG00000006081	POLR2D	99	87.931	Tupaia_belangeri
ENSCING00000011474	-	87	87.931	ENSTTRG00000010055	POLR2D	99	87.931	Tursiops_truncatus
ENSCING00000011474	-	96	86.719	ENSUAMG00000024374	POLR2D	97	86.719	Ursus_americanus
ENSCING00000011474	-	88	87.179	ENSUMAG00000008280	POLR2D	99	87.379	Ursus_maritimus
ENSCING00000011474	-	87	87.931	ENSVPAG00000007239	POLR2D	99	87.931	Vicugna_pacos
ENSCING00000011474	-	96	86.719	ENSVVUG00000008616	POLR2D	90	86.719	Vulpes_vulpes
ENSCING00000011474	-	96	85.156	ENSXETG00000002955	polr2d	90	85.156	Xenopus_tropicalis
ENSCING00000011474	-	77	88.350	ENSXCOG00000012668	polr2d	99	88.350	Xiphophorus_couchianus
ENSCING00000011474	-	77	88.350	ENSXMAG00000014031	polr2d	99	88.350	Xiphophorus_maculatus