EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000012370 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 5
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 3451 bases
Position: chrHT000150.1:282453-285903
Accession: 100185978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000010229	RRM_1	PF00076.22	5.5e-32	1	2
ENSCINP00000010229	RRM_1	PF00076.22	5.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000010229	-	1218	XM_002121295	ENSCINP00000010229	292 (aa)	XP_002121331	F6X9C7

Gene Model

Click here to download ENSCING00000012370's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000012370's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000012370	-	68	57.214	ENSAPOG00000023399	-	60	54.545	Acanthochromis_polyacanthus
ENSCING00000012370	-	68	60.606	ENSACIG00000018649	srsf4	89	57.343	Amphilophus_citrinellus
ENSCING00000012370	-	62	57.692	ENSAOCG00000005997	srsf4	90	58.791	Amphiprion_ocellaris
ENSCING00000012370	-	68	61.307	ENSACLG00000003395	srsf4	64	74.359	Astatotilapia_calliptera
ENSCING00000012370	-	68	59.701	ENSACLG00000021269	-	50	58.500	Astatotilapia_calliptera
ENSCING00000012370	-	68	62.121	ENSAMXG00000034811	srsf4	75	67.949	Astyanax_mexicanus
ENSCING00000012370	-	68	46.000	WBGene00004698	rsp-1	97	48.993	Caenorhabditis_elegans
ENSCING00000012370	-	68	64.878	ENSCING00000024718	-	58	65.238	Ciona_intestinalis
ENSCING00000012370	-	67	52.451	ENSCING00000011362	-	65	53.807	Ciona_intestinalis
ENSCING00000012370	-	69	66.169	ENSCING00000020631	-	80	66.169	Ciona_intestinalis
ENSCING00000012370	-	100	76.370	ENSCSAVG00000002581	-	100	75.082	Ciona_savignyi
ENSCING00000012370	-	68	59.799	ENSCSEG00000010058	srsf4	75	58.042	Cynoglossus_semilaevis
ENSCING00000012370	-	68	58.081	ENSDARG00000105293	srsf4	79	65.476	Danio_rerio
ENSCING00000012370	-	68	60.500	FBgn0004587	B52	97	51.034	Drosophila_melanogaster
ENSCING00000012370	-	69	53.922	ENSEBUG00000001681	srsf4	67	53.769	Eptatretus_burgeri
ENSCING00000012370	-	63	48.087	ENSEBUG00000003129	srsf4	66	46.995	Eptatretus_burgeri
ENSCING00000012370	-	68	56.784	ENSELUG00000017551	srsf4	92	54.861	Esox_lucius
ENSCING00000012370	-	68	60.804	ENSFHEG00000007472	srsf4	83	73.077	Fundulus_heteroclitus
ENSCING00000012370	-	68	59.596	ENSGMOG00000012906	srsf4	56	56.398	Gadus_morhua
ENSCING00000012370	-	68	62.312	ENSGAFG00000018496	srsf4	65	54.950	Gambusia_affinis
ENSCING00000012370	-	68	62.500	ENSGACG00000002389	srsf4	55	61.111	Gasterosteus_aculeatus
ENSCING00000012370	-	68	59.701	ENSHBUG00000011326	-	50	58.500	Haplochromis_burtoni
ENSCING00000012370	-	68	63.131	ENSHCOG00000012540	srsf4	67	60.606	Hippocampus_comes
ENSCING00000012370	-	81	52.256	ENSKMAG00000013631	srsf4	84	53.361	Kryptolebias_marmoratus
ENSCING00000012370	-	68	62.814	ENSMAMG00000004888	srsf4	67	61.111	Mastacembelus_armatus
ENSCING00000012370	-	68	61.307	ENSMZEG00005026275	srsf4	64	74.359	Maylandia_zebra
ENSCING00000012370	-	96	54.417	ENSMMOG00000013653	srsf4	64	58.500	Mola_mola
ENSCING00000012370	-	67	64.646	ENSMODG00000011052	SRSF4	54	62.814	Monodelphis_domestica
ENSCING00000012370	-	80	61.702	ENSMALG00000013392	srsf4	65	60.500	Monopterus_albus
ENSCING00000012370	-	67	53.266	ENSNLEG00000030787	-	61	52.261	Nomascus_leucogenys
ENSCING00000012370	-	68	60.606	ENSORLG00020016052	srsf4	65	63.636	Oryzias_latipes_hni
ENSCING00000012370	-	68	60.302	ENSORLG00015007566	srsf4	69	63.636	Oryzias_latipes_hsok
ENSCING00000012370	-	68	60.302	ENSOMEG00000005541	srsf4	50	63.636	Oryzias_melastigma
ENSCING00000012370	-	56	62.195	ENSOARG00000002451	SRSF4	66	52.000	Ovis_aries
ENSCING00000012370	-	68	61.616	ENSPMGG00000013436	srsf4	94	57.432	Periophthalmus_magnuspinnatus
ENSCING00000012370	-	67	54.315	ENSPMAG00000009397	srsf4	68	52.500	Petromyzon_marinus
ENSCING00000012370	-	68	63.000	ENSPLAG00000008812	srsf4	86	44.275	Poecilia_latipinna
ENSCING00000012370	-	68	63.000	ENSPMEG00000023638	srsf4	52	60.199	Poecilia_mexicana
ENSCING00000012370	-	99	51.274	ENSPNAG00000023844	srsf4	53	60.606	Pygocentrus_nattereri
ENSCING00000012370	-	69	61.275	ENSSFOG00015020292	srsf4	71	72.727	Scleropages_formosus
ENSCING00000012370	-	97	51.307	ENSSMAG00000001707	srsf4	58	51.739	Scophthalmus_maximus
ENSCING00000012370	-	68	57.692	ENSSDUG00000007387	srsf4	53	61.616	Seriola_dumerili
ENSCING00000012370	-	68	53.769	ENSSLDG00000009745	srsf4	60	54.040	Seriola_lalandi_dorsalis
ENSCING00000012370	-	82	55.422	ENSSPAG00000014538	srsf4	70	73.077	Stegastes_partitus
ENSCING00000012370	-	93	56.827	ENSTRUG00000011891	srsf4	98	45.338	Takifugu_rubripes
ENSCING00000012370	-	67	58.883	ENSXCOG00000003212	-	54	58.621	Xiphophorus_couchianus
ENSCING00000012370	-	68	63.000	ENSXCOG00000018826	srsf4	89	52.857	Xiphophorus_couchianus