EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000012468 (Gene tree)
Gene ID: 100181118
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 2-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5600 bases
Position: chr3:5106062-5111661
Accession: 100181118
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000023253	RRM_1	PF00076.22	7.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000023499	-	1218	XM_002131874	ENSCINP00000023253	225 (aa)	XP_002131910	F6UTK0

Gene Model

Click here to download ENSCING00000012468's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000012468's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000012468	-	84	65.174	ENSG00000100836	PABPN1	98	64.848	Homo_sapiens
ENSCING00000012468	-	79	66.667	ENSG00000258643	BCL2L2-PABPN1	57	64.021	Homo_sapiens
ENSCING00000012468	-	89	62.085	ENSAPOG00000016425	pabpn1	90	62.559	Acanthochromis_polyacanthus
ENSCING00000012468	-	79	66.667	ENSAMEG00000007048	BCL2L2-PABPN1	100	64.021	Ailuropoda_melanoleuca
ENSCING00000012468	-	80	64.804	ENSACIG00000021744	pabpn1	100	67.232	Amphilophus_citrinellus
ENSCING00000012468	-	89	62.085	ENSAOCG00000015805	pabpn1	90	62.559	Amphiprion_ocellaris
ENSCING00000012468	-	89	62.085	ENSAPEG00000009623	pabpn1	90	62.559	Amphiprion_percula
ENSCING00000012468	-	89	62.085	ENSATEG00000020531	pabpn1	90	62.559	Anabas_testudineus
ENSCING00000012468	-	79	63.684	ENSACAG00000006185	-	67	66.316	Anolis_carolinensis
ENSCING00000012468	-	84	65.174	ENSANAG00000024513	-	72	62.687	Aotus_nancymaae
ENSCING00000012468	-	80	64.444	ENSACLG00000016374	pabpn1	57	65.854	Astatotilapia_calliptera
ENSCING00000012468	-	89	60.849	ENSAMXG00000000452	pabpn1	100	61.798	Astyanax_mexicanus
ENSCING00000012468	-	80	66.492	ENSBTAG00000053753	-	71	64.398	Bos_taurus
ENSCING00000012468	-	80	65.193	ENSBTAG00000050594	-	67	62.032	Bos_taurus
ENSCING00000012468	-	84	65.174	ENSBTAG00000006884	PABPN1	68	60.386	Bos_taurus
ENSCING00000012468	-	70	52.500	WBGene00003904	pabp-2	77	52.830	Caenorhabditis_elegans
ENSCING00000012468	-	69	62.874	ENSCJAG00000004407	-	89	61.236	Callithrix_jacchus
ENSCING00000012468	-	84	65.174	ENSCJAG00000007960	-	74	62.687	Callithrix_jacchus
ENSCING00000012468	-	84	65.174	ENSCAFG00000011482	PABPN1	65	62.687	Canis_familiaris
ENSCING00000012468	-	84	65.174	ENSCAFG00020007298	-	65	62.687	Canis_lupus_dingo
ENSCING00000012468	-	84	65.174	ENSCAFG00020006651	-	65	62.687	Canis_lupus_dingo
ENSCING00000012468	-	84	65.174	ENSCHIG00000012184	PABPN1	65	62.687	Capra_hircus
ENSCING00000012468	-	79	66.667	ENSTSYG00000033996	BCL2L2-PABPN1	100	62.360	Carlito_syrichta
ENSCING00000012468	-	59	65.152	ENSCAPG00000009461	-	94	65.152	Cavia_aperea
ENSCING00000012468	-	84	64.677	ENSCPOG00000025574	PABPN1	65	62.189	Cavia_porcellus
ENSCING00000012468	-	84	65.174	ENSCCAG00000033954	BCL2L2-PABPN1	74	62.687	Cebus_capucinus
ENSCING00000012468	-	84	65.174	ENSCATG00000038536	BCL2L2-PABPN1	74	62.687	Cercocebus_atys
ENSCING00000012468	-	83	46.512	ENSCLAG00000012423	PABPN1	54	62.069	Chinchilla_lanigera
ENSCING00000012468	-	84	63.682	ENSCSAG00000016036	PABPN1	65	61.194	Chlorocebus_sabaeus
ENSCING00000012468	-	79	61.905	ENSCHOG00000004798	BCL2L2-PABPN1	81	59.259	Choloepus_hoffmanni
ENSCING00000012468	-	69	64.671	ENSCPBG00000026060	-	100	62.921	Chrysemys_picta_bellii
ENSCING00000012468	-	74	90.476	ENSCSAVG00000002001	-	100	90.476	Ciona_savignyi
ENSCING00000012468	-	79	66.667	ENSCANG00000009750	BCL2L2-PABPN1	100	62.360	Colobus_angolensis_palliatus
ENSCING00000012468	-	80	58.421	ENSCANG00000030980	-	74	53.398	Colobus_angolensis_palliatus
ENSCING00000012468	-	84	64.677	ENSCGRG00001019696	Pabpn1	100	61.798	Cricetulus_griseus_chok1gshd
ENSCING00000012468	-	64	71.918	ENSCGRG00000011102	Pabpn1	100	61.798	Cricetulus_griseus_crigri
ENSCING00000012468	-	89	62.085	ENSCSEG00000008774	pabpn1	90	63.033	Cynoglossus_semilaevis
ENSCING00000012468	-	89	60.849	ENSCVAG00000003152	pabpn1	90	61.321	Cyprinodon_variegatus
ENSCING00000012468	-	89	61.611	ENSDARG00000045373	pabpn1	90	64.929	Danio_rerio
ENSCING00000012468	-	71	52.439	ENSDARG00000087996	pabpn1l	73	58.333	Danio_rerio
ENSCING00000012468	-	84	65.174	ENSDNOG00000023682	PABPN1	65	62.687	Dasypus_novemcinctus
ENSCING00000012468	-	84	64.179	ENSDORG00000028966	-	65	61.692	Dipodomys_ordii
ENSCING00000012468	-	74	52.976	ENSDORG00000023928	-	90	63.077	Dipodomys_ordii
ENSCING00000012468	-	90	50.673	FBgn0005648	Pabp2	99	48.430	Drosophila_melanogaster
ENSCING00000012468	-	99	58.723	ENSEBUG00000002322	pabpn1	100	58.723	Eptatretus_burgeri
ENSCING00000012468	-	84	65.174	ENSEASG00005011716	PABPN1	65	62.687	Equus_asinus_asinus
ENSCING00000012468	-	84	64.322	ENSECAG00000011652	PABPN1	63	64.894	Equus_caballus
ENSCING00000012468	-	84	64.000	ENSEEUG00000012973	-	68	63.000	Erinaceus_europaeus
ENSCING00000012468	-	89	60.377	ENSELUG00000022654	pabpn1	88	63.679	Esox_lucius
ENSCING00000012468	-	84	65.174	ENSFCAG00000031922	PABPN1	65	62.687	Felis_catus
ENSCING00000012468	-	69	63.473	ENSFDAG00000018381	BCL2L2-PABPN1	100	61.798	Fukomys_damarensis
ENSCING00000012468	-	89	61.905	ENSFHEG00000007215	pabpn1	90	60.952	Fundulus_heteroclitus
ENSCING00000012468	-	75	68.452	ENSGMOG00000003922	pabpn1	56	68.098	Gadus_morhua
ENSCING00000012468	-	80	63.731	ENSGALG00000052930	-	56	61.979	Gallus_gallus
ENSCING00000012468	-	89	61.033	ENSGAFG00000017099	pabpn1	90	61.033	Gambusia_affinis
ENSCING00000012468	-	77	68.750	ENSGACG00000002167	pabpn1	90	58.667	Gasterosteus_aculeatus
ENSCING00000012468	-	84	65.174	ENSGGOG00000022683	-	74	62.687	Gorilla_gorilla
ENSCING00000012468	-	88	54.808	ENSGGOG00000025919	-	99	54.749	Gorilla_gorilla
ENSCING00000012468	-	80	58.947	ENSGGOG00000039675	-	71	58.947	Gorilla_gorilla
ENSCING00000012468	-	89	61.611	ENSHBUG00000019523	pabpn1	90	64.929	Haplochromis_burtoni
ENSCING00000012468	-	87	55.838	ENSHGLG00000018588	-	69	52.941	Heterocephalus_glaber_female
ENSCING00000012468	-	84	64.677	ENSHGLG00000002927	-	89	71.631	Heterocephalus_glaber_female
ENSCING00000012468	-	69	53.416	ENSHGLG00000009842	-	100	54.706	Heterocephalus_glaber_female
ENSCING00000012468	-	69	59.036	ENSHGLG00100018935	-	100	59.887	Heterocephalus_glaber_male
ENSCING00000012468	-	87	55.838	ENSHGLG00100015565	-	71	52.941	Heterocephalus_glaber_male
ENSCING00000012468	-	78	65.909	ENSHGLG00100006673	-	100	61.798	Heterocephalus_glaber_male
ENSCING00000012468	-	89	63.333	ENSHCOG00000004655	pabpn1	90	63.810	Hippocampus_comes
ENSCING00000012468	-	89	62.085	ENSIPUG00000008085	PABPN1	90	62.559	Ictalurus_punctatus
ENSCING00000012468	-	83	62.755	ENSIPUG00000000180	-	86	63.265	Ictalurus_punctatus
ENSCING00000012468	-	69	64.072	ENSSTOG00000029847	BCL2L2-PABPN1	100	62.360	Ictidomys_tridecemlineatus
ENSCING00000012468	-	69	64.072	ENSJJAG00000023507	Gm20521	100	62.360	Jaculus_jaculus
ENSCING00000012468	-	89	62.264	ENSKMAG00000018748	pabpn1	90	62.264	Kryptolebias_marmoratus
ENSCING00000012468	-	89	62.085	ENSLBEG00000027266	pabpn1	90	62.559	Labrus_bergylta
ENSCING00000012468	-	69	70.064	ENSLACG00000000646	pabpn1	64	71.034	Latimeria_chalumnae
ENSCING00000012468	-	80	59.896	ENSLOCG00000004694	pabpn1l	88	60.638	Lepisosteus_oculatus
ENSCING00000012468	-	84	63.000	ENSLOCG00000000796	pabpn1	58	66.871	Lepisosteus_oculatus
ENSCING00000012468	-	60	66.207	ENSLAFG00000031227	-	96	62.759	Loxodonta_africana
ENSCING00000012468	-	79	66.667	ENSMFAG00000032183	BCL2L2-PABPN1	100	62.360	Macaca_fascicularis
ENSCING00000012468	-	58	58.865	ENSMFAG00000031355	-	99	58.865	Macaca_fascicularis
ENSCING00000012468	-	86	63.107	ENSMMUG00000014747	BCL2L2-PABPN1	99	62.759	Macaca_mulatta
ENSCING00000012468	-	80	55.440	ENSMMUG00000048382	-	64	55.440	Macaca_mulatta
ENSCING00000012468	-	84	65.174	ENSMNEG00000045065	BCL2L2-PABPN1	74	62.687	Macaca_nemestrina
ENSCING00000012468	-	70	53.892	ENSMNEG00000035750	-	99	58.865	Macaca_nemestrina
ENSCING00000012468	-	79	66.667	ENSMLEG00000043862	BCL2L2-PABPN1	100	62.360	Mandrillus_leucophaeus
ENSCING00000012468	-	70	55.215	ENSMLEG00000034623	-	99	59.854	Mandrillus_leucophaeus
ENSCING00000012468	-	84	64.000	ENSMAMG00000007979	pabpn1	71	61.538	Mastacembelus_armatus
ENSCING00000012468	-	84	64.000	ENSMZEG00005011904	pabpn1	56	68.098	Maylandia_zebra
ENSCING00000012468	-	84	64.677	ENSMAUG00000007383	Gm20521	67	62.189	Mesocricetus_auratus
ENSCING00000012468	-	84	65.174	ENSMICG00000010002	BCL2L2-PABPN1	74	62.687	Microcebus_murinus
ENSCING00000012468	-	84	64.677	ENSMOCG00000018557	Gm20521	86	71.631	Microtus_ochrogaster
ENSCING00000012468	-	89	61.611	ENSMMOG00000005405	pabpn1	90	64.929	Mola_mola
ENSCING00000012468	-	83	62.626	ENSMODG00000004535	-	61	64.362	Monodelphis_domestica
ENSCING00000012468	-	84	64.000	ENSMALG00000019612	pabpn1	70	61.538	Monopterus_albus
ENSCING00000012468	-	79	66.138	MGP_CAROLIEiJ_G0019276	Gm20521	57	63.492	Mus_caroli
ENSCING00000012468	-	84	64.677	MGP_CAROLIEiJ_G0019277	Pabpn1	100	61.798	Mus_caroli
ENSCING00000012468	-	84	64.677	ENSMUSG00000022194	Pabpn1	98	64.242	Mus_musculus
ENSCING00000012468	-	79	66.138	ENSMUSG00000092232	Gm20521	57	63.492	Mus_musculus
ENSCING00000012468	-	84	64.677	MGP_PahariEiJ_G0030295	Pabpn1	98	78.049	Mus_pahari
ENSCING00000012468	-	79	66.138	MGP_PahariEiJ_G0030294	Gm20521	57	63.492	Mus_pahari
ENSCING00000012468	-	79	66.138	MGP_SPRETEiJ_G0020165	Gm20521	57	63.492	Mus_spretus
ENSCING00000012468	-	84	64.677	MGP_SPRETEiJ_G0020166	Pabpn1	100	61.798	Mus_spretus
ENSCING00000012468	-	68	63.636	ENSMPUG00000006775	-	98	64.848	Mustela_putorius_furo
ENSCING00000012468	-	80	64.921	ENSMLUG00000028677	-	70	64.921	Myotis_lucifugus
ENSCING00000012468	-	70	68.987	ENSMLUG00000012452	-	63	64.767	Myotis_lucifugus
ENSCING00000012468	-	79	65.608	ENSMLUG00000003800	-	100	65.608	Myotis_lucifugus
ENSCING00000012468	-	79	66.667	ENSNGAG00000019529	Gm20521	57	64.021	Nannospalax_galili
ENSCING00000012468	-	84	64.000	ENSNBRG00000023955	pabpn1	100	67.232	Neolamprologus_brichardi
ENSCING00000012468	-	60	50.340	ENSNLEG00000035292	-	97	50.340	Nomascus_leucogenys
ENSCING00000012468	-	84	57.812	ENSNLEG00000030598	-	73	58.854	Nomascus_leucogenys
ENSCING00000012468	-	84	65.174	ENSNLEG00000015007	-	71	64.179	Nomascus_leucogenys
ENSCING00000012468	-	84	63.021	ENSODEG00000003739	-	67	61.979	Octodon_degus
ENSCING00000012468	-	84	64.677	ENSODEG00000002083	BCL2L2-PABPN1	65	62.189	Octodon_degus
ENSCING00000012468	-	74	53.933	ENSODEG00000011555	-	95	53.933	Octodon_degus
ENSCING00000012468	-	84	64.000	ENSONIG00000008112	pabpn1	56	68.098	Oreochromis_niloticus
ENSCING00000012468	-	60	65.517	ENSOANG00000009218	-	99	66.207	Ornithorhynchus_anatinus
ENSCING00000012468	-	80	66.492	ENSOCUG00000016174	PABPN1	76	59.420	Oryctolagus_cuniculus
ENSCING00000012468	-	84	64.000	ENSORLG00000027900	pabpn1	79	59.223	Oryzias_latipes
ENSCING00000012468	-	80	66.480	ENSORLG00020004681	pabpn1	70	63.942	Oryzias_latipes_hni
ENSCING00000012468	-	89	61.611	ENSORLG00015000018	pabpn1	90	64.929	Oryzias_latipes_hsok
ENSCING00000012468	-	84	64.000	ENSOMEG00000016618	pabpn1	69	59.223	Oryzias_melastigma
ENSCING00000012468	-	84	65.174	ENSOGAG00000008710	PABPN1	65	62.687	Otolemur_garnettii
ENSCING00000012468	-	79	66.667	ENSOARG00000019336	BCL2L2-PABPN1	52	64.021	Ovis_aries
ENSCING00000012468	-	69	53.614	ENSPPAG00000039421	-	100	55.367	Pan_paniscus
ENSCING00000012468	-	79	66.667	ENSPPAG00000028984	BCL2L2-PABPN1	98	64.848	Pan_paniscus
ENSCING00000012468	-	84	65.174	ENSPPRG00000010567	PABPN1	65	62.687	Panthera_pardus
ENSCING00000012468	-	69	64.072	ENSPTIG00000001063	BCL2L2-PABPN1	100	62.360	Panthera_tigris_altaica
ENSCING00000012468	-	84	65.174	ENSPTRG00000006167	BCL2L2	74	62.687	Pan_troglodytes
ENSCING00000012468	-	90	51.818	ENSPTRG00000047273	-	83	51.818	Pan_troglodytes
ENSCING00000012468	-	84	65.174	ENSPANG00000021100	BCL2L2-PABPN1	74	62.687	Papio_anubis
ENSCING00000012468	-	80	56.995	ENSPANG00000023326	-	99	59.574	Papio_anubis
ENSCING00000012468	-	84	64.000	ENSPKIG00000008144	-	70	63.158	Paramormyrops_kingsleyae
ENSCING00000012468	-	89	58.296	ENSPKIG00000018052	pabpn1	90	59.434	Paramormyrops_kingsleyae
ENSCING00000012468	-	80	57.692	ENSPKIG00000008340	pabpn1l	92	54.589	Paramormyrops_kingsleyae
ENSCING00000012468	-	84	64.500	ENSPMGG00000022027	pabpn1	68	59.709	Periophthalmus_magnuspinnatus
ENSCING00000012468	-	84	64.677	ENSPEMG00000008332	Gm20521	85	71.631	Peromyscus_maniculatus_bairdii
ENSCING00000012468	-	71	65.663	ENSPMAG00000006212	pabpn1	92	60.181	Petromyzon_marinus
ENSCING00000012468	-	84	63.682	ENSPCIG00000027751	-	65	64.677	Phascolarctos_cinereus
ENSCING00000012468	-	74	68.862	ENSPFOG00000010351	pabpn1	89	61.502	Poecilia_formosa
ENSCING00000012468	-	74	68.263	ENSPLAG00000022696	pabpn1	70	60.000	Poecilia_latipinna
ENSCING00000012468	-	74	68.862	ENSPMEG00000020856	pabpn1	90	61.502	Poecilia_mexicana
ENSCING00000012468	-	74	68.263	ENSPREG00000011278	pabpn1	90	61.033	Poecilia_reticulata
ENSCING00000012468	-	83	64.894	ENSPPYG00000005663	PABPN1	66	64.894	Pongo_abelii
ENSCING00000012468	-	83	54.737	ENSPCAG00000005902	PABPN1	64	54.737	Procavia_capensis
ENSCING00000012468	-	84	65.174	ENSPCOG00000028047	BCL2L2-PABPN1	74	62.687	Propithecus_coquereli
ENSCING00000012468	-	84	63.184	ENSPVAG00000005270	PABPN1	68	61.905	Pteropus_vampyrus
ENSCING00000012468	-	89	61.611	ENSPNYG00000013182	pabpn1	90	64.929	Pundamilia_nyererei
ENSCING00000012468	-	80	57.297	ENSPNAG00000021666	pabpn1l	90	57.297	Pygocentrus_nattereri
ENSCING00000012468	-	89	61.137	ENSPNAG00000023526	pabpn1	90	64.455	Pygocentrus_nattereri
ENSCING00000012468	-	84	64.677	ENSRNOG00000042195	Pabpn1	66	63.682	Rattus_norvegicus
ENSCING00000012468	-	78	66.477	ENSRBIG00000040762	BCL2L2-PABPN1	54	66.477	Rhinopithecus_bieti
ENSCING00000012468	-	79	60.452	ENSRBIG00000039547	-	78	52.830	Rhinopithecus_bieti
ENSCING00000012468	-	84	58.163	ENSRBIG00000042811	-	82	58.163	Rhinopithecus_bieti
ENSCING00000012468	-	78	66.477	ENSRROG00000045535	BCL2L2-PABPN1	100	62.360	Rhinopithecus_roxellana
ENSCING00000012468	-	79	60.452	ENSRROG00000040409	-	78	53.302	Rhinopithecus_roxellana
ENSCING00000012468	-	87	53.171	ENSRROG00000036409	-	63	52.195	Rhinopithecus_roxellana
ENSCING00000012468	-	79	62.871	ENSSBOG00000026930	BCL2L2-PABPN1	98	64.848	Saimiri_boliviensis_boliviensis
ENSCING00000012468	-	79	65.079	ENSSHAG00000014841	-	87	63.492	Sarcophilus_harrisii
ENSCING00000012468	-	87	51.942	ENSSHAG00000007707	-	87	51.942	Sarcophilus_harrisii
ENSCING00000012468	-	89	61.611	ENSSFOG00015012565	pabpn1	94	62.085	Scleropages_formosus
ENSCING00000012468	-	89	61.611	ENSSFOG00015014718	pabpn1	90	62.085	Scleropages_formosus
ENSCING00000012468	-	69	61.935	ENSSFOG00015015833	pabpn1l	66	64.789	Scleropages_formosus
ENSCING00000012468	-	89	62.085	ENSSMAG00000020157	pabpn1	90	62.559	Scophthalmus_maximus
ENSCING00000012468	-	84	64.000	ENSSDUG00000020582	pabpn1	70	61.538	Seriola_dumerili
ENSCING00000012468	-	89	62.085	ENSSLDG00000007118	pabpn1	90	62.559	Seriola_lalandi_dorsalis
ENSCING00000012468	-	69	62.275	ENSSPUG00000018308	-	100	63.483	Sphenodon_punctatus
ENSCING00000012468	-	89	60.000	ENSSPAG00000021658	pabpn1	90	65.094	Stegastes_partitus
ENSCING00000012468	-	84	65.174	ENSSSCG00000002023	PABPN1	65	62.687	Sus_scrofa
ENSCING00000012468	-	80	54.749	ENSSSCG00000034805	-	70	54.190	Sus_scrofa
ENSCING00000012468	-	89	61.137	ENSTRUG00000023664	pabpn1	90	61.611	Takifugu_rubripes
ENSCING00000012468	-	80	64.362	ENSTNIG00000005369	pabpn1	86	58.738	Tetraodon_nigroviridis
ENSCING00000012468	-	84	65.174	ENSUAMG00000024460	PABPN1	65	62.687	Ursus_americanus
ENSCING00000012468	-	79	66.667	ENSUMAG00000014288	BCL2L2-PABPN1	57	64.021	Ursus_maritimus
ENSCING00000012468	-	79	66.667	ENSVVUG00000019912	BCL2L2-PABPN1	74	64.021	Vulpes_vulpes
ENSCING00000012468	-	80	66.316	ENSXETG00000014597	pabpn1	64	64.211	Xenopus_tropicalis
ENSCING00000012468	-	56	62.992	ENSXCOG00000005158	pabpn1	98	55.491	Xiphophorus_couchianus
ENSCING00000012468	-	74	68.263	ENSXMAG00000006196	pabpn1	90	61.033	Xiphophorus_maculatus