EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000012689 (Gene tree)
Gene ID: 100181343
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 2034 bases
Position: chr3:3695179-3697212
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000023559	RRM_1	PF00076.22	1.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000023805	-	733	-	ENSCINP00000023559	127 (aa)	-	F6U3F2

Gene Model

Click here to download ENSCING00000012689's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000012689's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000012689	-	97	80.488	ENSG00000115128	SF3B6	98	80.488	Homo_sapiens
ENSCING00000012689	-	97	81.301	ENSAPOG00000023788	sf3b6	98	81.301	Acanthochromis_polyacanthus
ENSCING00000012689	-	97	80.488	ENSAMEG00000002786	SF3B6	98	80.488	Ailuropoda_melanoleuca
ENSCING00000012689	-	97	81.301	ENSACIG00000012608	sf3b6	98	81.301	Amphilophus_citrinellus
ENSCING00000012689	-	97	81.301	ENSAOCG00000013394	sf3b6	98	81.301	Amphiprion_ocellaris
ENSCING00000012689	-	97	81.301	ENSAPEG00000015311	sf3b6	98	81.301	Amphiprion_percula
ENSCING00000012689	-	97	81.301	ENSATEG00000016569	sf3b6	98	81.301	Anabas_testudineus
ENSCING00000012689	-	97	80.488	ENSACAG00000011677	SF3B6	98	80.488	Anolis_carolinensis
ENSCING00000012689	-	97	80.488	ENSANAG00000027284	SF3B6	94	80.488	Aotus_nancymaae
ENSCING00000012689	-	97	81.301	ENSACLG00000007793	sf3b6	98	81.301	Astatotilapia_calliptera
ENSCING00000012689	-	97	80.488	ENSAMXG00000034888	sf3b6	98	80.488	Astyanax_mexicanus
ENSCING00000012689	-	97	78.862	ENSBTAG00000049128	-	98	78.862	Bos_taurus
ENSCING00000012689	-	97	80.488	ENSBTAG00000003407	SF3B6	98	80.488	Bos_taurus
ENSCING00000012689	-	96	60.656	WBGene00016808	C50D2.5	88	60.656	Caenorhabditis_elegans
ENSCING00000012689	-	97	80.488	ENSCJAG00000007716	SF3B6	98	80.488	Callithrix_jacchus
ENSCING00000012689	-	97	80.488	ENSCAFG00000003957	SF3B6	98	80.488	Canis_familiaris
ENSCING00000012689	-	97	80.488	ENSCAFG00020025576	SF3B6	98	80.488	Canis_lupus_dingo
ENSCING00000012689	-	97	80.488	ENSCHIG00000009902	SF3B6	98	80.488	Capra_hircus
ENSCING00000012689	-	97	80.488	ENSTSYG00000013978	SF3B6	98	80.488	Carlito_syrichta
ENSCING00000012689	-	94	77.311	ENSCAPG00000016302	SF3B6	98	77.311	Cavia_aperea
ENSCING00000012689	-	97	80.488	ENSCPOG00000008016	SF3B6	98	80.488	Cavia_porcellus
ENSCING00000012689	-	97	80.488	ENSCCAG00000036653	SF3B6	98	80.488	Cebus_capucinus
ENSCING00000012689	-	97	76.423	ENSCCAG00000018894	-	95	76.423	Cebus_capucinus
ENSCING00000012689	-	97	80.488	ENSCATG00000030936	SF3B6	98	80.488	Cercocebus_atys
ENSCING00000012689	-	97	80.488	ENSCLAG00000014512	SF3B6	98	80.488	Chinchilla_lanigera
ENSCING00000012689	-	97	80.488	ENSCSAG00000008390	SF3B6	98	80.488	Chlorocebus_sabaeus
ENSCING00000012689	-	96	61.475	ENSCHOG00000013886	-	97	61.475	Choloepus_hoffmanni
ENSCING00000012689	-	97	80.488	ENSCHOG00000000689	SF3B6	98	80.488	Choloepus_hoffmanni
ENSCING00000012689	-	97	80.488	ENSCPBG00000020042	SF3B6	98	80.488	Chrysemys_picta_bellii
ENSCING00000012689	-	97	80.488	ENSCANG00000030559	SF3B6	98	80.488	Colobus_angolensis_palliatus
ENSCING00000012689	-	97	80.488	ENSCGRG00001014595	Sf3b6	98	80.488	Cricetulus_griseus_chok1gshd
ENSCING00000012689	-	97	80.488	ENSCGRG00000005272	Sf3b6	98	80.488	Cricetulus_griseus_crigri
ENSCING00000012689	-	97	80.488	ENSCSEG00000019017	sf3b6	98	80.488	Cynoglossus_semilaevis
ENSCING00000012689	-	97	80.488	ENSCVAG00000005055	sf3b6	98	80.488	Cyprinodon_variegatus
ENSCING00000012689	-	97	80.488	ENSDARG00000009753	sf3b6	98	80.488	Danio_rerio
ENSCING00000012689	-	97	80.488	ENSDNOG00000007148	SF3B6	98	80.488	Dasypus_novemcinctus
ENSCING00000012689	-	96	66.129	ENSDORG00000029761	-	96	66.129	Dipodomys_ordii
ENSCING00000012689	-	96	66.129	ENSDORG00000027390	-	96	66.129	Dipodomys_ordii
ENSCING00000012689	-	97	80.488	ENSDORG00000009772	Sf3b6	98	80.488	Dipodomys_ordii
ENSCING00000012689	-	91	73.043	FBgn0035692	Sf3b6	95	73.043	Drosophila_melanogaster
ENSCING00000012689	-	90	83.333	ENSEBUG00000004424	sf3b6	90	83.333	Eptatretus_burgeri
ENSCING00000012689	-	97	80.488	ENSEASG00005009993	SF3B6	98	80.488	Equus_asinus_asinus
ENSCING00000012689	-	97	69.106	ENSEASG00005008061	-	98	69.106	Equus_asinus_asinus
ENSCING00000012689	-	76	88.542	ENSECAG00000015618	SF3B6	88	88.542	Equus_caballus
ENSCING00000012689	-	80	75.248	ENSECAG00000027755	-	86	75.248	Equus_caballus
ENSCING00000012689	-	97	79.675	ENSELUG00000010379	sf3b6	98	79.675	Esox_lucius
ENSCING00000012689	-	97	80.488	ENSFCAG00000031365	SF3B6	98	80.488	Felis_catus
ENSCING00000012689	-	97	80.488	ENSFALG00000001651	SF3B6	98	80.488	Ficedula_albicollis
ENSCING00000012689	-	97	80.488	ENSFDAG00000007864	SF3B6	98	80.488	Fukomys_damarensis
ENSCING00000012689	-	97	80.488	ENSFHEG00000000685	sf3b6	98	80.488	Fundulus_heteroclitus
ENSCING00000012689	-	97	78.862	ENSGMOG00000005123	sf3b6	98	78.862	Gadus_morhua
ENSCING00000012689	-	70	77.528	ENSGALG00000016501	SF3B6	98	77.528	Gallus_gallus
ENSCING00000012689	-	97	81.301	ENSGAFG00000009334	sf3b6	98	81.301	Gambusia_affinis
ENSCING00000012689	-	97	80.488	ENSGACG00000004803	sf3b6	98	80.488	Gasterosteus_aculeatus
ENSCING00000012689	-	97	80.488	ENSGAGG00000012240	SF3B6	98	80.488	Gopherus_agassizii
ENSCING00000012689	-	97	80.488	ENSGGOG00000040806	SF3B6	98	80.488	Gorilla_gorilla
ENSCING00000012689	-	97	81.301	ENSHBUG00000012556	sf3b6	98	81.301	Haplochromis_burtoni
ENSCING00000012689	-	97	80.488	ENSHGLG00000014895	SF3B14	98	80.488	Heterocephalus_glaber_female
ENSCING00000012689	-	97	80.488	ENSHGLG00100008639	SF3B14	98	80.488	Heterocephalus_glaber_male
ENSCING00000012689	-	97	80.488	ENSHCOG00000019962	sf3b6	98	80.488	Hippocampus_comes
ENSCING00000012689	-	97	80.488	ENSIPUG00000023800	sf3b6	98	80.488	Ictalurus_punctatus
ENSCING00000012689	-	97	80.488	ENSJJAG00000021819	Sf3b6	98	80.488	Jaculus_jaculus
ENSCING00000012689	-	97	81.301	ENSKMAG00000004000	sf3b6	98	81.301	Kryptolebias_marmoratus
ENSCING00000012689	-	97	79.675	ENSLBEG00000022937	sf3b6	98	79.675	Labrus_bergylta
ENSCING00000012689	-	97	80.488	ENSLACG00000014326	SF3B6	98	80.488	Latimeria_chalumnae
ENSCING00000012689	-	97	80.488	ENSLOCG00000016481	sf3b6	98	80.488	Lepisosteus_oculatus
ENSCING00000012689	-	97	80.488	ENSLAFG00000029423	SF3B6	98	80.488	Loxodonta_africana
ENSCING00000012689	-	97	80.488	ENSMFAG00000038178	SF3B6	98	80.488	Macaca_fascicularis
ENSCING00000012689	-	97	80.488	ENSMMUG00000001282	SF3B6	98	80.488	Macaca_mulatta
ENSCING00000012689	-	97	80.488	ENSMNEG00000029050	SF3B6	98	80.488	Macaca_nemestrina
ENSCING00000012689	-	97	80.488	ENSMLEG00000019896	SF3B6	98	80.488	Mandrillus_leucophaeus
ENSCING00000012689	-	76	89.583	ENSMAMG00000007713	sf3b6	87	89.583	Mastacembelus_armatus
ENSCING00000012689	-	97	81.301	ENSMZEG00005003557	sf3b6	98	81.301	Maylandia_zebra
ENSCING00000012689	-	97	80.488	ENSMGAG00000014057	SF3B6	98	80.488	Meleagris_gallopavo
ENSCING00000012689	-	97	80.488	ENSMAUG00000000586	-	98	80.488	Mesocricetus_auratus
ENSCING00000012689	-	97	80.488	ENSMICG00000032874	SF3B6	98	80.488	Microcebus_murinus
ENSCING00000012689	-	97	80.488	ENSMOCG00000014338	Sf3b6	98	80.488	Microtus_ochrogaster
ENSCING00000012689	-	97	80.488	ENSMMOG00000015653	sf3b6	98	80.488	Mola_mola
ENSCING00000012689	-	97	73.984	ENSMODG00000002144	SF3B6	98	73.984	Monodelphis_domestica
ENSCING00000012689	-	97	80.488	ENSMALG00000019642	sf3b6	66	80.488	Monopterus_albus
ENSCING00000012689	-	97	80.488	MGP_CAROLIEiJ_G0017590	Sf3b6	98	80.488	Mus_caroli
ENSCING00000012689	-	97	80.488	ENSMUSG00000037361	Sf3b6	98	80.488	Mus_musculus
ENSCING00000012689	-	97	80.488	MGP_PahariEiJ_G0029348	Sf3b6	98	80.488	Mus_pahari
ENSCING00000012689	-	97	80.488	MGP_SPRETEiJ_G0018434	Sf3b6	98	80.488	Mus_spretus
ENSCING00000012689	-	97	80.488	ENSMPUG00000013957	SF3B6	98	80.488	Mustela_putorius_furo
ENSCING00000012689	-	97	78.862	ENSMLUG00000002473	SF3B6	98	78.862	Myotis_lucifugus
ENSCING00000012689	-	97	80.488	ENSNGAG00000020256	Sf3b6	98	80.488	Nannospalax_galili
ENSCING00000012689	-	97	81.301	ENSNBRG00000018244	sf3b6	98	81.301	Neolamprologus_brichardi
ENSCING00000012689	-	97	80.488	ENSNLEG00000000815	-	98	80.488	Nomascus_leucogenys
ENSCING00000012689	-	84	79.439	ENSODEG00000009547	SF3B6	90	79.439	Octodon_degus
ENSCING00000012689	-	97	81.301	ENSONIG00000001219	sf3b6	98	81.301	Oreochromis_niloticus
ENSCING00000012689	-	97	80.488	ENSOANG00000007627	SF3B6	98	80.488	Ornithorhynchus_anatinus
ENSCING00000012689	-	97	80.488	ENSOCUG00000022008	SF3B6	98	80.488	Oryctolagus_cuniculus
ENSCING00000012689	-	97	79.675	ENSORLG00000015955	sf3b6	98	79.675	Oryzias_latipes
ENSCING00000012689	-	97	79.675	ENSORLG00020005875	sf3b6	98	79.675	Oryzias_latipes_hni
ENSCING00000012689	-	97	79.675	ENSORLG00015001347	sf3b6	98	79.675	Oryzias_latipes_hsok
ENSCING00000012689	-	97	80.488	ENSOMEG00000014506	sf3b6	98	80.488	Oryzias_melastigma
ENSCING00000012689	-	97	80.488	ENSOGAG00000004468	SF3B6	98	80.488	Otolemur_garnettii
ENSCING00000012689	-	97	80.488	ENSOARG00000017819	SF3B6	98	80.488	Ovis_aries
ENSCING00000012689	-	97	80.488	ENSPPAG00000027816	SF3B6	98	80.488	Pan_paniscus
ENSCING00000012689	-	97	80.488	ENSPPRG00000023257	SF3B6	98	80.488	Panthera_pardus
ENSCING00000012689	-	97	80.488	ENSPTIG00000013322	SF3B6	98	80.488	Panthera_tigris_altaica
ENSCING00000012689	-	97	80.488	ENSPTRG00000011709	SF3B6	98	80.488	Pan_troglodytes
ENSCING00000012689	-	97	80.488	ENSPANG00000021963	SF3B6	98	80.488	Papio_anubis
ENSCING00000012689	-	97	80.488	ENSPKIG00000012311	sf3b6	98	80.488	Paramormyrops_kingsleyae
ENSCING00000012689	-	89	79.646	ENSPSIG00000017115	SF3B6	98	79.646	Pelodiscus_sinensis
ENSCING00000012689	-	76	87.500	ENSPMGG00000014621	sf3b6	80	87.500	Periophthalmus_magnuspinnatus
ENSCING00000012689	-	97	80.488	ENSPEMG00000010308	Sf3b6	98	80.488	Peromyscus_maniculatus_bairdii
ENSCING00000012689	-	92	81.197	ENSPMAG00000006008	sf3b6	94	81.197	Petromyzon_marinus
ENSCING00000012689	-	97	60.976	ENSPCIG00000015858	-	98	60.976	Phascolarctos_cinereus
ENSCING00000012689	-	97	80.488	ENSPCIG00000022128	-	98	80.488	Phascolarctos_cinereus
ENSCING00000012689	-	97	81.301	ENSPFOG00000012494	sf3b6	98	81.301	Poecilia_formosa
ENSCING00000012689	-	97	81.301	ENSPLAG00000020460	sf3b6	98	81.301	Poecilia_latipinna
ENSCING00000012689	-	97	81.301	ENSPMEG00000004426	sf3b6	98	81.301	Poecilia_mexicana
ENSCING00000012689	-	97	80.488	ENSPPYG00000012603	SF3B6	98	80.488	Pongo_abelii
ENSCING00000012689	-	97	80.488	ENSPVAG00000011346	SF3B6	98	80.488	Pteropus_vampyrus
ENSCING00000012689	-	97	81.301	ENSPNYG00000021832	sf3b6	98	81.301	Pundamilia_nyererei
ENSCING00000012689	-	97	80.488	ENSPNAG00000008845	sf3b6	98	81.308	Pygocentrus_nattereri
ENSCING00000012689	-	97	66.667	ENSRNOG00000046172	Sf3b6	98	66.667	Rattus_norvegicus
ENSCING00000012689	-	97	80.488	ENSRBIG00000039598	SF3B6	98	80.488	Rhinopithecus_bieti
ENSCING00000012689	-	97	80.488	ENSRROG00000011368	SF3B6	98	80.488	Rhinopithecus_roxellana
ENSCING00000012689	-	97	80.488	ENSSBOG00000002914	SF3B6	98	80.488	Saimiri_boliviensis_boliviensis
ENSCING00000012689	-	97	80.488	ENSSFOG00015014370	sf3b6	98	80.488	Scleropages_formosus
ENSCING00000012689	-	97	79.675	ENSSMAG00000004566	sf3b6	98	79.675	Scophthalmus_maximus
ENSCING00000012689	-	97	81.301	ENSSDUG00000006538	sf3b6	98	81.301	Seriola_dumerili
ENSCING00000012689	-	97	81.301	ENSSLDG00000004494	sf3b6	98	81.301	Seriola_lalandi_dorsalis
ENSCING00000012689	-	97	80.488	ENSSARG00000011902	-	98	80.488	Sorex_araneus
ENSCING00000012689	-	97	80.488	ENSSPUG00000014919	SF3B6	98	80.488	Sphenodon_punctatus
ENSCING00000012689	-	97	81.301	ENSSPAG00000013201	sf3b6	98	81.301	Stegastes_partitus
ENSCING00000012689	-	97	80.488	ENSSSCG00000008587	SF3B6	98	80.488	Sus_scrofa
ENSCING00000012689	-	97	80.488	ENSTGUG00000013191	SF3B6	98	80.488	Taeniopygia_guttata
ENSCING00000012689	-	97	81.301	ENSTRUG00000025286	sf3b6	98	81.301	Takifugu_rubripes
ENSCING00000012689	-	97	81.301	ENSTNIG00000009719	sf3b6	98	81.301	Tetraodon_nigroviridis
ENSCING00000012689	-	89	79.646	ENSTBEG00000012532	SF3B6	98	79.646	Tupaia_belangeri
ENSCING00000012689	-	89	79.646	ENSTTRG00000013430	SF3B6	98	79.646	Tursiops_truncatus
ENSCING00000012689	-	97	80.488	ENSUAMG00000025329	SF3B6	98	80.488	Ursus_americanus
ENSCING00000012689	-	97	65.323	ENSUAMG00000000978	-	98	65.323	Ursus_americanus
ENSCING00000012689	-	97	80.488	ENSUMAG00000022835	SF3B6	98	80.488	Ursus_maritimus
ENSCING00000012689	-	89	79.646	ENSVPAG00000005546	SF3B6	98	79.646	Vicugna_pacos
ENSCING00000012689	-	97	80.488	ENSVVUG00000010874	SF3B6	98	80.488	Vulpes_vulpes
ENSCING00000012689	-	97	79.675	ENSXETG00000018204	sf3b6	98	79.675	Xenopus_tropicalis
ENSCING00000012689	-	76	89.583	ENSXCOG00000008477	sf3b6	74	89.583	Xiphophorus_couchianus
ENSCING00000012689	-	97	81.301	ENSXMAG00000010747	sf3b6	98	81.301	Xiphophorus_maculatus