EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000012767 (Gene tree)
Gene ID: 104266855
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerase III subunit RPC8-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 618 bases
Position: chr1:5703505-5704122
Accession: 104266855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000023695	RNA_pol_Rbc25	PF08292.12	9.1e-38	1	1
ENSCINP00000023695	SHS2_Rpb7-N	PF03876.17	1.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000023941	-	618	-	ENSCINP00000023695	205 (aa)	XP_009862385	F6ZQ58

Gene Model

Click here to download ENSCING00000012767's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000012767's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000012767	-	99	71.078	ENSG00000100413	POLR3H	99	71.078	Homo_sapiens
ENSCING00000012767	-	99	64.384	ENSAPOG00000011407	polr3h	100	62.673	Acanthochromis_polyacanthus
ENSCING00000012767	-	99	68.137	ENSAMEG00000015630	POLR3H	100	68.780	Ailuropoda_melanoleuca
ENSCING00000012767	-	99	65.686	ENSACIG00000010128	polr3h	100	66.176	Amphilophus_citrinellus
ENSCING00000012767	-	99	65.741	ENSAOCG00000019002	polr3h	100	64.019	Amphiprion_ocellaris
ENSCING00000012767	-	99	65.278	ENSAPEG00000012507	polr3h	100	63.551	Amphiprion_percula
ENSCING00000012767	-	99	63.889	ENSATEG00000008085	polr3h	100	62.617	Anabas_testudineus
ENSCING00000012767	-	99	65.865	ENSAPLG00000005063	POLR3H	100	65.550	Anas_platyrhynchos
ENSCING00000012767	-	99	68.932	ENSACAG00000011213	POLR3H	100	68.447	Anolis_carolinensis
ENSCING00000012767	-	99	70.588	ENSANAG00000025122	POLR3H	99	70.588	Aotus_nancymaae
ENSCING00000012767	-	99	64.815	ENSACLG00000014650	polr3h	100	64.019	Astatotilapia_calliptera
ENSCING00000012767	-	99	70.588	ENSAMXG00000015544	polr3h	100	68.137	Astyanax_mexicanus
ENSCING00000012767	-	99	68.137	ENSBTAG00000005311	POLR3H	99	69.118	Bos_taurus
ENSCING00000012767	-	99	39.706	WBGene00014111	rpc-25	82	38.537	Caenorhabditis_elegans
ENSCING00000012767	-	99	70.098	ENSCJAG00000005072	POLR3H	100	69.756	Callithrix_jacchus
ENSCING00000012767	-	99	67.647	ENSCAFG00000001053	POLR3H	100	68.293	Canis_familiaris
ENSCING00000012767	-	99	67.647	ENSCAFG00020001964	POLR3H	100	68.293	Canis_lupus_dingo
ENSCING00000012767	-	99	68.627	ENSCHIG00000013984	POLR3H	99	69.608	Capra_hircus
ENSCING00000012767	-	99	70.098	ENSTSYG00000003484	POLR3H	99	70.098	Carlito_syrichta
ENSCING00000012767	-	72	71.622	ENSCAPG00000003786	POLR3H	98	71.622	Cavia_aperea
ENSCING00000012767	-	99	68.627	ENSCPOG00000012650	POLR3H	100	68.293	Cavia_porcellus
ENSCING00000012767	-	99	70.588	ENSCCAG00000025802	POLR3H	99	70.588	Cebus_capucinus
ENSCING00000012767	-	99	70.588	ENSCATG00000018316	POLR3H	99	70.588	Cercocebus_atys
ENSCING00000012767	-	99	69.118	ENSCLAG00000016948	POLR3H	99	69.118	Chinchilla_lanigera
ENSCING00000012767	-	99	70.588	ENSCSAG00000005798	POLR3H	86	70.588	Chlorocebus_sabaeus
ENSCING00000012767	-	99	69.903	ENSCPBG00000020544	POLR3H	99	68.780	Chrysemys_picta_bellii
ENSCING00000012767	-	100	88.293	ENSCSAVG00000010448	-	100	88.293	Ciona_savignyi
ENSCING00000012767	-	99	70.098	ENSCANG00000035073	POLR3H	99	70.098	Colobus_angolensis_palliatus
ENSCING00000012767	-	84	69.186	ENSCGRG00001023556	Polr3h	99	70.349	Cricetulus_griseus_chok1gshd
ENSCING00000012767	-	99	57.353	ENSCGRG00000017869	Polr3h	99	58.333	Cricetulus_griseus_crigri
ENSCING00000012767	-	90	66.848	ENSCSEG00000006721	polr3h	79	72.222	Cynoglossus_semilaevis
ENSCING00000012767	-	99	64.815	ENSCVAG00000010996	polr3h	100	63.551	Cyprinodon_variegatus
ENSCING00000012767	-	99	65.581	ENSDARG00000102590	polr3h	100	65.888	Danio_rerio
ENSCING00000012767	-	99	68.137	ENSDNOG00000025527	POLR3H	99	69.118	Dasypus_novemcinctus
ENSCING00000012767	-	99	68.627	ENSDORG00000002215	Polr3h	99	69.608	Dipodomys_ordii
ENSCING00000012767	-	99	53.774	FBgn0036188	CG7339	88	52.358	Drosophila_melanogaster
ENSCING00000012767	-	99	65.686	ENSETEG00000010746	POLR3H	99	66.176	Echinops_telfairi
ENSCING00000012767	-	99	63.927	ENSEBUG00000005511	polr3h	100	61.644	Eptatretus_burgeri
ENSCING00000012767	-	99	68.627	ENSEASG00005001539	POLR3H	100	69.268	Equus_asinus_asinus
ENSCING00000012767	-	99	58.738	ENSECAG00000019715	POLR3H	99	59.709	Equus_caballus
ENSCING00000012767	-	99	66.176	ENSEEUG00000010464	POLR3H	99	66.176	Erinaceus_europaeus
ENSCING00000012767	-	99	65.865	ENSELUG00000007834	polr3h	100	65.385	Esox_lucius
ENSCING00000012767	-	99	69.608	ENSFCAG00000006684	POLR3H	99	69.608	Felis_catus
ENSCING00000012767	-	99	68.116	ENSFALG00000011952	POLR3H	100	67.476	Ficedula_albicollis
ENSCING00000012767	-	99	68.627	ENSFDAG00000008844	POLR3H	100	68.293	Fukomys_damarensis
ENSCING00000012767	-	99	63.551	ENSFHEG00000020517	polr3h	100	63.551	Fundulus_heteroclitus
ENSCING00000012767	-	99	63.084	ENSGMOG00000001934	polr3h	100	62.617	Gadus_morhua
ENSCING00000012767	-	100	67.308	ENSGALG00000011947	POLR3H	100	66.990	Gallus_gallus
ENSCING00000012767	-	99	65.421	ENSGAFG00000010908	polr3h	100	63.551	Gambusia_affinis
ENSCING00000012767	-	99	62.963	ENSGACG00000007549	polr3h	100	62.150	Gasterosteus_aculeatus
ENSCING00000012767	-	99	69.903	ENSGAGG00000017507	POLR3H	99	68.780	Gopherus_agassizii
ENSCING00000012767	-	99	71.078	ENSGGOG00000038191	POLR3H	88	71.078	Gorilla_gorilla
ENSCING00000012767	-	99	64.815	ENSHBUG00000017295	polr3h	100	64.019	Haplochromis_burtoni
ENSCING00000012767	-	99	68.627	ENSHGLG00000014795	POLR3H	100	68.293	Heterocephalus_glaber_female
ENSCING00000012767	-	99	68.627	ENSHGLG00100014750	POLR3H	100	68.293	Heterocephalus_glaber_male
ENSCING00000012767	-	99	65.116	ENSHCOG00000006814	polr3h	100	63.850	Hippocampus_comes
ENSCING00000012767	-	99	66.204	ENSIPUG00000019750	polr3h	100	65.888	Ictalurus_punctatus
ENSCING00000012767	-	99	69.118	ENSSTOG00000016215	POLR3H	99	70.098	Ictidomys_tridecemlineatus
ENSCING00000012767	-	99	68.627	ENSJJAG00000017986	Polr3h	99	69.608	Jaculus_jaculus
ENSCING00000012767	-	99	63.551	ENSKMAG00000014797	polr3h	100	63.084	Kryptolebias_marmoratus
ENSCING00000012767	-	99	64.216	ENSLBEG00000010889	polr3h	100	63.725	Labrus_bergylta
ENSCING00000012767	-	99	69.231	ENSLACG00000011734	POLR3H	100	68.900	Latimeria_chalumnae
ENSCING00000012767	-	83	73.099	ENSLOCG00000011621	polr3h	69	74.691	Lepisosteus_oculatus
ENSCING00000012767	-	99	69.608	ENSLAFG00000006033	POLR3H	99	70.588	Loxodonta_africana
ENSCING00000012767	-	99	70.588	ENSMFAG00000001153	POLR3H	99	70.588	Macaca_fascicularis
ENSCING00000012767	-	99	70.588	ENSMMUG00000001459	POLR3H	99	70.588	Macaca_mulatta
ENSCING00000012767	-	99	70.588	ENSMNEG00000022264	POLR3H	99	70.588	Macaca_nemestrina
ENSCING00000012767	-	82	72.619	ENSMLEG00000024568	POLR3H	99	72.619	Mandrillus_leucophaeus
ENSCING00000012767	-	99	65.278	ENSMAMG00000007445	polr3h	100	64.019	Mastacembelus_armatus
ENSCING00000012767	-	99	64.815	ENSMZEG00005003756	polr3h	100	64.019	Maylandia_zebra
ENSCING00000012767	-	99	65.714	ENSMGAG00000012126	POLR3H	100	65.072	Meleagris_gallopavo
ENSCING00000012767	-	99	68.627	ENSMAUG00000022215	Polr3h	99	69.608	Mesocricetus_auratus
ENSCING00000012767	-	99	69.118	ENSMICG00000013546	POLR3H	99	70.098	Microcebus_murinus
ENSCING00000012767	-	99	69.118	ENSMOCG00000018747	Polr3h	99	70.098	Microtus_ochrogaster
ENSCING00000012767	-	99	67.157	ENSMMOG00000002705	polr3h	100	65.686	Mola_mola
ENSCING00000012767	-	99	68.627	ENSMODG00000016563	POLR3H	99	68.627	Monodelphis_domestica
ENSCING00000012767	-	99	68.137	ENSMALG00000013403	polr3h	100	66.176	Monopterus_albus
ENSCING00000012767	-	99	68.627	MGP_CAROLIEiJ_G0020063	Polr3h	99	69.608	Mus_caroli
ENSCING00000012767	-	99	68.627	ENSMUSG00000022476	Polr3h	99	69.608	Mus_musculus
ENSCING00000012767	-	99	68.627	MGP_PahariEiJ_G0020065	Polr3h	99	69.608	Mus_pahari
ENSCING00000012767	-	99	68.627	MGP_SPRETEiJ_G0020964	Polr3h	99	69.608	Mus_spretus
ENSCING00000012767	-	99	69.118	ENSMPUG00000016395	POLR3H	100	69.756	Mustela_putorius_furo
ENSCING00000012767	-	99	68.137	ENSMLUG00000002487	POLR3H	100	67.317	Myotis_lucifugus
ENSCING00000012767	-	99	69.118	ENSNGAG00000015009	Polr3h	99	70.098	Nannospalax_galili
ENSCING00000012767	-	90	69.565	ENSNBRG00000003286	polr3h	71	75.309	Neolamprologus_brichardi
ENSCING00000012767	-	99	70.098	ENSNLEG00000015536	POLR3H	99	70.098	Nomascus_leucogenys
ENSCING00000012767	-	99	63.725	ENSMEUG00000002041	POLR3H	99	63.725	Notamacropus_eugenii
ENSCING00000012767	-	99	64.815	ENSONIG00000008444	polr3h	100	64.019	Oreochromis_niloticus
ENSCING00000012767	-	94	66.839	ENSOANG00000004374	-	96	68.557	Ornithorhynchus_anatinus
ENSCING00000012767	-	99	67.647	ENSOCUG00000007275	POLR3H	99	68.627	Oryctolagus_cuniculus
ENSCING00000012767	-	99	63.084	ENSORLG00000014160	polr3h	100	62.617	Oryzias_latipes
ENSCING00000012767	-	99	63.551	ENSORLG00020007765	polr3h	100	63.084	Oryzias_latipes_hni
ENSCING00000012767	-	99	63.551	ENSORLG00015019039	polr3h	100	63.084	Oryzias_latipes_hsok
ENSCING00000012767	-	99	64.019	ENSOMEG00000005764	polr3h	100	63.551	Oryzias_melastigma
ENSCING00000012767	-	99	63.725	ENSOGAG00000030416	-	99	63.725	Otolemur_garnettii
ENSCING00000012767	-	99	70.098	ENSOGAG00000002850	-	100	69.756	Otolemur_garnettii
ENSCING00000012767	-	99	68.627	ENSOARG00000018319	POLR3H	99	69.608	Ovis_aries
ENSCING00000012767	-	99	71.078	ENSPPAG00000031000	POLR3H	99	71.078	Pan_paniscus
ENSCING00000012767	-	99	70.098	ENSPPRG00000005361	POLR3H	99	70.098	Panthera_pardus
ENSCING00000012767	-	99	70.098	ENSPTIG00000016286	POLR3H	99	70.098	Panthera_tigris_altaica
ENSCING00000012767	-	99	71.078	ENSPTRG00000051865	POLR3H	99	71.078	Pan_troglodytes
ENSCING00000012767	-	99	70.588	ENSPANG00000015758	POLR3H	99	70.588	Papio_anubis
ENSCING00000012767	-	99	67.308	ENSPKIG00000008527	polr3h	100	66.827	Paramormyrops_kingsleyae
ENSCING00000012767	-	99	70.388	ENSPSIG00000008284	POLR3H	89	69.268	Pelodiscus_sinensis
ENSCING00000012767	-	90	69.022	ENSPMGG00000018036	polr3h	64	73.457	Periophthalmus_magnuspinnatus
ENSCING00000012767	-	99	68.627	ENSPEMG00000000726	Polr3h	99	69.118	Peromyscus_maniculatus_bairdii
ENSCING00000012767	-	83	68.306	ENSPMAG00000007847	polr3h	97	67.582	Petromyzon_marinus
ENSCING00000012767	-	99	49.421	ENSPCIG00000026413	POLR3H	99	51.351	Phascolarctos_cinereus
ENSCING00000012767	-	99	62.844	ENSPFOG00000013681	polr3h	100	61.751	Poecilia_formosa
ENSCING00000012767	-	99	64.651	ENSPLAG00000017503	polr3h	100	63.551	Poecilia_latipinna
ENSCING00000012767	-	99	64.186	ENSPMEG00000018334	polr3h	100	63.084	Poecilia_mexicana
ENSCING00000012767	-	99	68.627	ENSPPYG00000010689	-	99	68.627	Pongo_abelii
ENSCING00000012767	-	99	69.608	ENSPPYG00000011872	-	99	69.608	Pongo_abelii
ENSCING00000012767	-	58	73.950	ENSPCAG00000009882	POLR3H	58	73.950	Procavia_capensis
ENSCING00000012767	-	99	69.118	ENSPCOG00000013751	POLR3H	99	70.098	Propithecus_coquereli
ENSCING00000012767	-	99	70.098	ENSPVAG00000001164	POLR3H	99	70.098	Pteropus_vampyrus
ENSCING00000012767	-	99	64.815	ENSPNYG00000024040	polr3h	100	64.019	Pundamilia_nyererei
ENSCING00000012767	-	99	67.606	ENSPNAG00000004860	polr3h	100	66.667	Pygocentrus_nattereri
ENSCING00000012767	-	99	68.627	ENSRNOG00000004471	Polr3h	99	69.608	Rattus_norvegicus
ENSCING00000012767	-	99	61.275	ENSRBIG00000040089	POLR3H	99	61.275	Rhinopithecus_bieti
ENSCING00000012767	-	99	70.588	ENSRROG00000033728	POLR3H	99	70.588	Rhinopithecus_roxellana
ENSCING00000012767	-	99	37.383	YKL144C	RPC25	99	37.383	Saccharomyces_cerevisiae
ENSCING00000012767	-	99	70.588	ENSSBOG00000020652	POLR3H	99	70.588	Saimiri_boliviensis_boliviensis
ENSCING00000012767	-	99	66.667	ENSSHAG00000010196	POLR3H	99	67.157	Sarcophilus_harrisii
ENSCING00000012767	-	99	67.308	ENSSFOG00015011506	polr3h	100	67.308	Scleropages_formosus
ENSCING00000012767	-	99	61.860	ENSSMAG00000005784	polr3h	100	60.748	Scophthalmus_maximus
ENSCING00000012767	-	99	62.791	ENSSDUG00000014946	polr3h	100	63.256	Seriola_dumerili
ENSCING00000012767	-	99	62.326	ENSSLDG00000018207	polr3h	100	62.791	Seriola_lalandi_dorsalis
ENSCING00000012767	-	99	71.569	ENSSPUG00000011619	POLR3H	99	69.608	Sphenodon_punctatus
ENSCING00000012767	-	99	63.889	ENSSPAG00000017974	polr3h	100	63.084	Stegastes_partitus
ENSCING00000012767	-	99	67.157	ENSSSCG00000000063	POLR3H	100	67.805	Sus_scrofa
ENSCING00000012767	-	99	67.619	ENSTGUG00000009901	POLR3H	100	66.986	Taeniopygia_guttata
ENSCING00000012767	-	99	65.116	ENSTRUG00000004012	polr3h	100	62.791	Takifugu_rubripes
ENSCING00000012767	-	99	64.815	ENSTNIG00000004956	polr3h	100	62.500	Tetraodon_nigroviridis
ENSCING00000012767	-	99	68.627	ENSTBEG00000011425	POLR3H	99	68.137	Tupaia_belangeri
ENSCING00000012767	-	81	71.856	ENSTTRG00000003373	POLR3H	99	71.856	Tursiops_truncatus
ENSCING00000012767	-	99	69.118	ENSUAMG00000022585	POLR3H	100	69.756	Ursus_americanus
ENSCING00000012767	-	99	62.745	ENSUMAG00000021018	POLR3H	99	63.725	Ursus_maritimus
ENSCING00000012767	-	99	67.647	ENSVVUG00000003543	POLR3H	100	68.293	Vulpes_vulpes
ENSCING00000012767	-	99	69.903	ENSXETG00000034216	polr3h	99	69.903	Xenopus_tropicalis
ENSCING00000012767	-	99	64.706	ENSXCOG00000016022	polr3h	100	66.176	Xiphophorus_couchianus
ENSCING00000012767	-	99	63.889	ENSXMAG00000006921	polr3h	100	62.791	Xiphophorus_maculatus