EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000012827 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3764 bases
Position: chr3:1666703-1670466
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000006367	tRNA-synt_2d	PF01409.20	3.8e-37	1	2
ENSCINP00000006367	tRNA-synt_2d	PF01409.20	3.8e-37	2	2
ENSCINP00000006367	FDX-ACB	PF03147.14	9.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000006367	-	1136	-	ENSCINP00000006367	287 (aa)	-	F6R7I5

Gene Model

Click here to download ENSCING00000012827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000012827's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000012827	-	97	51.957	ENSG00000145982	FARS2	89	51.111	Homo_sapiens
ENSCING00000012827	-	97	55.319	ENSAPOG00000014855	fars2	62	55.319	Acanthochromis_polyacanthus
ENSCING00000012827	-	97	53.901	ENSAMEG00000017443	FARS2	64	53.901	Ailuropoda_melanoleuca
ENSCING00000012827	-	97	44.366	ENSACIG00000020060	fars2	62	44.056	Amphilophus_citrinellus
ENSCING00000012827	-	62	49.162	ENSAOCG00000006402	FARS2	91	49.162	Amphiprion_ocellaris
ENSCING00000012827	-	97	55.477	ENSAPEG00000002964	fars2	66	55.477	Amphiprion_percula
ENSCING00000012827	-	90	51.711	ENSATEG00000016534	fars2	55	51.711	Anabas_testudineus
ENSCING00000012827	-	97	48.754	ENSACAG00000029677	FARS2	62	48.754	Anolis_carolinensis
ENSCING00000012827	-	97	40.000	ENSANAG00000019047	FARS2	57	40.000	Aotus_nancymaae
ENSCING00000012827	-	97	51.724	ENSACLG00000018607	fars2	66	51.724	Astatotilapia_calliptera
ENSCING00000012827	-	97	51.773	ENSAMXG00000019001	fars2	60	51.773	Astyanax_mexicanus
ENSCING00000012827	-	97	52.669	ENSBTAG00000018072	FARS2	63	52.669	Bos_taurus
ENSCING00000012827	-	97	43.056	WBGene00013361	fars-2	97	36.111	Caenorhabditis_elegans
ENSCING00000012827	-	97	53.381	ENSCJAG00000021369	FARS2	62	53.381	Callithrix_jacchus
ENSCING00000012827	-	97	53.737	ENSCAFG00000009483	FARS2	62	53.737	Canis_familiaris
ENSCING00000012827	-	97	53.737	ENSCAFG00020013360	FARS2	62	53.737	Canis_lupus_dingo
ENSCING00000012827	-	97	52.669	ENSCHIG00000017678	FARS2	63	52.669	Capra_hircus
ENSCING00000012827	-	97	47.331	ENSCAPG00000008055	FARS2	59	47.331	Cavia_aperea
ENSCING00000012827	-	97	52.500	ENSCPOG00000003994	FARS2	62	52.313	Cavia_porcellus
ENSCING00000012827	-	97	51.246	ENSCATG00000038588	FARS2	62	51.246	Cercocebus_atys
ENSCING00000012827	-	97	51.957	ENSCLAG00000017316	FARS2	62	51.957	Chinchilla_lanigera
ENSCING00000012827	-	81	52.137	ENSCSAG00000007344	FARS2	56	51.464	Chlorocebus_sabaeus
ENSCING00000012827	-	97	45.035	ENSCPBG00000008751	FARS2	62	44.056	Chrysemys_picta_bellii
ENSCING00000012827	-	97	81.071	ENSCSAVG00000011625	-	69	74.747	Ciona_savignyi
ENSCING00000012827	-	97	51.246	ENSCANG00000042851	FARS2	62	51.246	Colobus_angolensis_palliatus
ENSCING00000012827	-	97	52.669	ENSCGRG00001022626	Fars2	62	52.669	Cricetulus_griseus_chok1gshd
ENSCING00000012827	-	97	52.669	ENSCGRG00000007344	Fars2	62	52.669	Cricetulus_griseus_crigri
ENSCING00000012827	-	97	52.069	ENSCSEG00000018234	fars2	62	52.069	Cynoglossus_semilaevis
ENSCING00000012827	-	81	56.410	ENSCVAG00000008305	fars2	57	56.410	Cyprinodon_variegatus
ENSCING00000012827	-	97	53.191	ENSDARG00000091247	fars2	62	53.191	Danio_rerio
ENSCING00000012827	-	97	52.313	ENSDNOG00000018118	FARS2	62	52.313	Dasypus_novemcinctus
ENSCING00000012827	-	97	52.669	ENSDORG00000014796	Fars2	62	52.669	Dipodomys_ordii
ENSCING00000012827	-	97	48.148	FBgn0275436	PheRS-m	65	48.148	Drosophila_melanogaster
ENSCING00000012827	-	97	52.128	ENSEBUG00000007120	fars2	53	52.128	Eptatretus_burgeri
ENSCING00000012827	-	97	50.890	ENSEASG00005012111	FARS2	75	50.000	Equus_asinus_asinus
ENSCING00000012827	-	97	51.601	ENSECAG00000000279	FARS2	62	51.601	Equus_caballus
ENSCING00000012827	-	79	51.163	ENSEEUG00000007412	FARS2	50	51.163	Erinaceus_europaeus
ENSCING00000012827	-	97	53.191	ENSELUG00000004874	fars2	61	53.191	Esox_lucius
ENSCING00000012827	-	97	53.025	ENSFCAG00000014441	FARS2	62	53.025	Felis_catus
ENSCING00000012827	-	97	53.571	ENSFALG00000013171	FARS2	61	53.571	Ficedula_albicollis
ENSCING00000012827	-	97	51.957	ENSFDAG00000018935	FARS2	62	51.957	Fukomys_damarensis
ENSCING00000012827	-	97	52.069	ENSFHEG00000011155	fars2	66	52.069	Fundulus_heteroclitus
ENSCING00000012827	-	97	51.761	ENSGMOG00000015750	fars2	61	51.761	Gadus_morhua
ENSCING00000012827	-	97	53.929	ENSGALG00000042481	FARS2	62	53.929	Gallus_gallus
ENSCING00000012827	-	83	51.653	ENSGAFG00000002233	fars2	56	51.653	Gambusia_affinis
ENSCING00000012827	-	97	52.465	ENSGACG00000002036	fars2	61	52.465	Gasterosteus_aculeatus
ENSCING00000012827	-	97	52.669	ENSGAGG00000012914	FARS2	61	52.669	Gopherus_agassizii
ENSCING00000012827	-	97	51.957	ENSGGOG00000011842	FARS2	62	51.957	Gorilla_gorilla
ENSCING00000012827	-	97	51.724	ENSHBUG00000003439	fars2	66	51.724	Haplochromis_burtoni
ENSCING00000012827	-	97	52.313	ENSHGLG00000004389	FARS2	62	52.313	Heterocephalus_glaber_female
ENSCING00000012827	-	97	52.313	ENSHGLG00100010315	FARS2	62	52.313	Heterocephalus_glaber_male
ENSCING00000012827	-	97	52.613	ENSHCOG00000005861	fars2	65	52.613	Hippocampus_comes
ENSCING00000012827	-	97	54.255	ENSIPUG00000000375	fars2	61	54.255	Ictalurus_punctatus
ENSCING00000012827	-	97	53.025	ENSSTOG00000012156	FARS2	62	53.025	Ictidomys_tridecemlineatus
ENSCING00000012827	-	97	53.737	ENSJJAG00000002799	Fars2	62	53.737	Jaculus_jaculus
ENSCING00000012827	-	76	49.123	ENSLBEG00000019049	fars2	100	49.123	Labrus_bergylta
ENSCING00000012827	-	97	53.737	ENSLACG00000006541	FARS2	62	53.737	Latimeria_chalumnae
ENSCING00000012827	-	90	50.000	ENSLOCG00000011667	fars2	60	50.000	Lepisosteus_oculatus
ENSCING00000012827	-	97	52.313	ENSLAFG00000007104	FARS2	62	52.313	Loxodonta_africana
ENSCING00000012827	-	97	50.890	ENSMFAG00000043484	FARS2	62	50.890	Macaca_fascicularis
ENSCING00000012827	-	97	50.890	ENSMMUG00000016352	FARS2	62	50.890	Macaca_mulatta
ENSCING00000012827	-	97	50.890	ENSMNEG00000044897	FARS2	62	50.890	Macaca_nemestrina
ENSCING00000012827	-	97	51.246	ENSMLEG00000038594	FARS2	62	51.246	Mandrillus_leucophaeus
ENSCING00000012827	-	97	50.523	ENSMAMG00000008166	fars2	61	50.523	Mastacembelus_armatus
ENSCING00000012827	-	97	51.724	ENSMZEG00005020256	fars2	62	51.724	Maylandia_zebra
ENSCING00000012827	-	97	52.669	ENSMAUG00000008493	Fars2	62	52.669	Mesocricetus_auratus
ENSCING00000012827	-	97	51.957	ENSMICG00000003828	FARS2	100	51.818	Microcebus_murinus
ENSCING00000012827	-	97	52.669	ENSMOCG00000021203	Fars2	62	52.669	Microtus_ochrogaster
ENSCING00000012827	-	97	53.873	ENSMMOG00000019236	fars2	61	53.873	Mola_mola
ENSCING00000012827	-	97	53.025	ENSMODG00000009839	FARS2	62	53.025	Monodelphis_domestica
ENSCING00000012827	-	97	51.724	ENSMALG00000021209	fars2	54	51.724	Monopterus_albus
ENSCING00000012827	-	97	53.381	MGP_CAROLIEiJ_G0018432	Fars2	62	53.381	Mus_caroli
ENSCING00000012827	-	97	53.025	ENSMUSG00000021420	Fars2	100	52.273	Mus_musculus
ENSCING00000012827	-	97	53.381	MGP_PahariEiJ_G0019500	Fars2	62	53.381	Mus_pahari
ENSCING00000012827	-	97	53.025	MGP_SPRETEiJ_G0019312	Fars2	62	53.025	Mus_spretus
ENSCING00000012827	-	97	52.669	ENSMPUG00000000534	FARS2	56	52.669	Mustela_putorius_furo
ENSCING00000012827	-	97	53.381	ENSNGAG00000021589	Fars2	62	53.381	Nannospalax_galili
ENSCING00000012827	-	97	51.379	ENSNBRG00000016915	fars2	62	51.379	Neolamprologus_brichardi
ENSCING00000012827	-	97	52.669	ENSNLEG00000011479	FARS2	62	52.669	Nomascus_leucogenys
ENSCING00000012827	-	82	50.000	ENSMEUG00000003495	-	96	50.000	Notamacropus_eugenii
ENSCING00000012827	-	97	52.669	ENSODEG00000006881	FARS2	62	52.669	Octodon_degus
ENSCING00000012827	-	97	52.414	ENSONIG00000013394	fars2	60	52.414	Oreochromis_niloticus
ENSCING00000012827	-	97	53.025	ENSOCUG00000014165	FARS2	62	53.025	Oryctolagus_cuniculus
ENSCING00000012827	-	97	53.659	ENSORLG00000003287	fars2	62	53.659	Oryzias_latipes
ENSCING00000012827	-	97	53.659	ENSORLG00020010934	fars2	65	53.659	Oryzias_latipes_hni
ENSCING00000012827	-	97	53.659	ENSORLG00015007676	fars2	65	53.659	Oryzias_latipes_hsok
ENSCING00000012827	-	97	53.025	ENSOGAG00000001040	FARS2	62	53.025	Otolemur_garnettii
ENSCING00000012827	-	90	52.308	ENSPPAG00000040551	FARS2	58	52.308	Pan_paniscus
ENSCING00000012827	-	97	53.737	ENSPPRG00000006027	FARS2	62	53.737	Panthera_pardus
ENSCING00000012827	-	97	53.381	ENSPTIG00000016684	FARS2	62	53.381	Panthera_tigris_altaica
ENSCING00000012827	-	90	52.308	ENSPTRG00000017692	FARS2	55	52.308	Pan_troglodytes
ENSCING00000012827	-	97	51.246	ENSPANG00000018208	FARS2	62	51.246	Papio_anubis
ENSCING00000012827	-	97	53.191	ENSPKIG00000010545	fars2	61	53.191	Paramormyrops_kingsleyae
ENSCING00000012827	-	97	52.313	ENSPSIG00000007752	FARS2	61	52.313	Pelodiscus_sinensis
ENSCING00000012827	-	97	54.417	ENSPMGG00000011665	fars2	63	54.417	Periophthalmus_magnuspinnatus
ENSCING00000012827	-	76	52.727	ENSPEMG00000017477	-	100	52.727	Peromyscus_maniculatus_bairdii
ENSCING00000012827	-	97	52.128	ENSPMAG00000001580	fars2	67	52.128	Petromyzon_marinus
ENSCING00000012827	-	97	52.817	ENSPFOG00000017241	fars2	61	52.817	Poecilia_formosa
ENSCING00000012827	-	97	52.113	ENSPREG00000010118	fars2	62	52.113	Poecilia_reticulata
ENSCING00000012827	-	97	52.313	ENSPPYG00000016197	FARS2	62	52.313	Pongo_abelii
ENSCING00000012827	-	97	41.637	ENSPCAG00000002324	FARS2	62	41.637	Procavia_capensis
ENSCING00000012827	-	97	46.263	ENSPCOG00000015666	FARS2	57	46.263	Propithecus_coquereli
ENSCING00000012827	-	97	45.745	ENSPVAG00000015327	FARS2	62	45.745	Pteropus_vampyrus
ENSCING00000012827	-	82	50.000	ENSPNYG00000009469	fars2	52	50.000	Pundamilia_nyererei
ENSCING00000012827	-	97	53.546	ENSPNAG00000000440	fars2	61	53.546	Pygocentrus_nattereri
ENSCING00000012827	-	97	49.338	ENSRNOG00000016135	Fars2	64	49.338	Rattus_norvegicus
ENSCING00000012827	-	97	51.246	ENSRROG00000030357	FARS2	56	51.246	Rhinopithecus_roxellana
ENSCING00000012827	-	96	35.168	YPR047W	MSF1	68	35.168	Saccharomyces_cerevisiae
ENSCING00000012827	-	97	52.669	ENSSBOG00000025432	FARS2	62	52.669	Saimiri_boliviensis_boliviensis
ENSCING00000012827	-	97	53.901	ENSSFOG00015020636	fars2	61	53.901	Scleropages_formosus
ENSCING00000012827	-	97	52.083	ENSSMAG00000010353	fars2	63	52.083	Scophthalmus_maximus
ENSCING00000012827	-	97	51.034	ENSSDUG00000016357	fars2	62	51.034	Seriola_dumerili
ENSCING00000012827	-	81	45.382	ENSSLDG00000008683	fars2	57	45.382	Seriola_lalandi_dorsalis
ENSCING00000012827	-	64	54.891	ENSSARG00000001129	FARS2	54	54.891	Sorex_araneus
ENSCING00000012827	-	97	52.962	ENSSPAG00000001346	fars2	62	52.962	Stegastes_partitus
ENSCING00000012827	-	97	53.025	ENSSSCG00000038717	FARS2	93	53.025	Sus_scrofa
ENSCING00000012827	-	97	53.571	ENSTGUG00000002269	FARS2	69	53.571	Taeniopygia_guttata
ENSCING00000012827	-	97	50.699	ENSTRUG00000005887	fars2	78	50.699	Takifugu_rubripes
ENSCING00000012827	-	97	52.837	ENSTNIG00000005800	fars2	62	52.837	Tetraodon_nigroviridis
ENSCING00000012827	-	97	33.808	ENSTBEG00000001804	-	93	33.808	Tupaia_belangeri
ENSCING00000012827	-	97	53.025	ENSTTRG00000000063	FARS2	61	53.025	Tursiops_truncatus
ENSCING00000012827	-	97	53.025	ENSUMAG00000018618	FARS2	62	53.025	Ursus_maritimus
ENSCING00000012827	-	97	48.582	ENSVPAG00000010451	FARS2	63	48.582	Vicugna_pacos
ENSCING00000012827	-	97	53.737	ENSVVUG00000005409	FARS2	62	53.737	Vulpes_vulpes