EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000013458 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1085 bases
Position: chr4:4844423-4845507
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000024693	RNase_PH	PF01138.21	1.6e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000024939	-	840	-	ENSCINP00000024693	280 (aa)	-	F6V2B2

Gene Model

Click here to download ENSCING00000013458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000013458's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000013458	-	94	32.734	ENSG00000223496	EXOSC6	97	32.509	Homo_sapiens
ENSCING00000013458	-	85	30.924	ENSAPOG00000000255	exosc4	95	30.924	Acanthochromis_polyacanthus
ENSCING00000013458	-	96	40.221	ENSAPOG00000022329	exosc6	97	40.221	Acanthochromis_polyacanthus
ENSCING00000013458	-	84	30.833	ENSAMEG00000006093	EXOSC4	92	30.833	Ailuropoda_melanoleuca
ENSCING00000013458	-	85	30.522	ENSACIG00000017924	exosc4	95	30.522	Amphilophus_citrinellus
ENSCING00000013458	-	96	39.483	ENSACIG00000016636	exosc6	97	39.483	Amphilophus_citrinellus
ENSCING00000013458	-	85	30.924	ENSAOCG00000005105	exosc4	95	30.924	Amphiprion_ocellaris
ENSCING00000013458	-	96	40.221	ENSAOCG00000006951	exosc6	97	40.221	Amphiprion_ocellaris
ENSCING00000013458	-	96	39.852	ENSAPEG00000022951	exosc6	97	39.852	Amphiprion_percula
ENSCING00000013458	-	85	30.924	ENSAPEG00000003972	exosc4	95	30.924	Amphiprion_percula
ENSCING00000013458	-	85	30.924	ENSATEG00000007766	exosc4	95	30.924	Anabas_testudineus
ENSCING00000013458	-	96	38.745	ENSATEG00000014148	exosc6	97	39.483	Anabas_testudineus
ENSCING00000013458	-	94	30.147	ENSANAG00000009362	EXOSC6	97	30.935	Aotus_nancymaae
ENSCING00000013458	-	96	38.462	ENSACLG00000022304	exosc6	97	38.462	Astatotilapia_calliptera
ENSCING00000013458	-	85	31.474	ENSACLG00000020071	exosc4	95	31.474	Astatotilapia_calliptera
ENSCING00000013458	-	96	40.149	ENSAMXG00000026269	exosc6	97	40.149	Astyanax_mexicanus
ENSCING00000013458	-	85	31.727	ENSAMXG00000030867	exosc4	95	31.727	Astyanax_mexicanus
ENSCING00000013458	-	94	33.453	ENSBTAG00000053923	EXOSC6	97	32.862	Bos_taurus
ENSCING00000013458	-	62	30.857	WBGene00007201	exos-4.1	72	30.857	Caenorhabditis_elegans
ENSCING00000013458	-	87	30.000	ENSCJAG00000021458	EXOSC4	96	30.000	Callithrix_jacchus
ENSCING00000013458	-	94	32.014	ENSCJAG00000014559	EXOSC6	98	32.862	Callithrix_jacchus
ENSCING00000013458	-	94	32.374	ENSCAFG00020020974	EXOSC6	97	32.155	Canis_lupus_dingo
ENSCING00000013458	-	94	32.734	ENSCHIG00000007389	EXOSC6	97	32.155	Capra_hircus
ENSCING00000013458	-	87	30.000	ENSTSYG00000029697	EXOSC4	96	30.000	Carlito_syrichta
ENSCING00000013458	-	53	30.000	ENSTSYG00000014183	EXOSC5	59	30.000	Carlito_syrichta
ENSCING00000013458	-	96	31.502	ENSCPOG00000037814	-	98	31.502	Cavia_porcellus
ENSCING00000013458	-	68	36.364	ENSCLAG00000004121	EXOSC6	96	36.364	Chinchilla_lanigera
ENSCING00000013458	-	84	30.579	ENSCLAG00000014676	EXOSC4	93	30.579	Chinchilla_lanigera
ENSCING00000013458	-	84	33.468	ENSCPBG00000018860	EXOSC4	94	33.468	Chrysemys_picta_bellii
ENSCING00000013458	-	72	34.300	ENSCING00000009562	-	79	34.300	Ciona_intestinalis
ENSCING00000013458	-	96	75.185	ENSCSAVG00000002563	-	100	75.185	Ciona_savignyi
ENSCING00000013458	-	63	35.359	ENSCSAVG00000008006	-	72	35.359	Ciona_savignyi
ENSCING00000013458	-	94	33.813	ENSCGRG00001000899	Exosc6	97	33.216	Cricetulus_griseus_chok1gshd
ENSCING00000013458	-	96	37.269	ENSCSEG00000014277	exosc6	97	37.269	Cynoglossus_semilaevis
ENSCING00000013458	-	85	30.924	ENSCSEG00000010906	exosc4	95	30.924	Cynoglossus_semilaevis
ENSCING00000013458	-	64	40.000	ENSCVAG00000021030	exosc6	88	40.000	Cyprinodon_variegatus
ENSCING00000013458	-	85	30.522	ENSCVAG00000006625	exosc4	95	30.522	Cyprinodon_variegatus
ENSCING00000013458	-	64	40.000	ENSCVAG00000021002	EXOSC6	88	40.000	Cyprinodon_variegatus
ENSCING00000013458	-	96	41.636	ENSDARG00000036060	exosc6	97	41.636	Danio_rerio
ENSCING00000013458	-	85	32.530	ENSDARG00000103432	exosc4	97	32.530	Danio_rerio
ENSCING00000013458	-	84	30.579	ENSDNOG00000009800	EXOSC4	94	30.204	Dasypus_novemcinctus
ENSCING00000013458	-	94	32.734	ENSDNOG00000032035	EXOSC6	97	32.862	Dasypus_novemcinctus
ENSCING00000013458	-	69	30.244	FBgn0036916	Mtr3	61	30.846	Drosophila_melanogaster
ENSCING00000013458	-	94	33.094	ENSEASG00005013410	EXOSC6	97	33.569	Equus_asinus_asinus
ENSCING00000013458	-	84	30.579	ENSEASG00005010166	EXOSC4	93	30.579	Equus_asinus_asinus
ENSCING00000013458	-	84	30.579	ENSECAG00000013658	EXOSC4	93	30.579	Equus_caballus
ENSCING00000013458	-	94	32.734	ENSECAG00000039860	EXOSC6	97	33.216	Equus_caballus
ENSCING00000013458	-	85	32.271	ENSELUG00000021011	exosc4	95	32.271	Esox_lucius
ENSCING00000013458	-	96	40.441	ENSELUG00000015515	exosc6	97	40.441	Esox_lucius
ENSCING00000013458	-	94	31.655	ENSFCAG00000046021	EXOSC6	97	33.216	Felis_catus
ENSCING00000013458	-	84	32.794	ENSFDAG00000006708	EXOSC4	94	32.794	Fukomys_damarensis
ENSCING00000013458	-	85	30.924	ENSFHEG00000013533	exosc4	95	30.924	Fundulus_heteroclitus
ENSCING00000013458	-	96	40.221	ENSFHEG00000017490	exosc6	97	40.221	Fundulus_heteroclitus
ENSCING00000013458	-	96	41.852	ENSGMOG00000008151	exosc6	97	41.852	Gadus_morhua
ENSCING00000013458	-	85	31.325	ENSGMOG00000002113	exosc4	93	31.325	Gadus_morhua
ENSCING00000013458	-	82	44.397	ENSGAFG00000015179	exosc6	88	44.492	Gambusia_affinis
ENSCING00000013458	-	85	30.924	ENSGAFG00000021407	exosc4	95	30.924	Gambusia_affinis
ENSCING00000013458	-	96	38.745	ENSGACG00000002690	exosc6	97	38.745	Gasterosteus_aculeatus
ENSCING00000013458	-	85	30.120	ENSGACG00000017838	exosc4	92	30.120	Gasterosteus_aculeatus
ENSCING00000013458	-	85	31.474	ENSHBUG00000006605	exosc4	95	31.474	Haplochromis_burtoni
ENSCING00000013458	-	96	39.338	ENSHBUG00000011123	exosc6	97	39.338	Haplochromis_burtoni
ENSCING00000013458	-	94	33.094	ENSHGLG00000021313	EXOSC6	97	32.509	Heterocephalus_glaber_female
ENSCING00000013458	-	84	32.794	ENSHGLG00000016299	EXOSC4	94	32.794	Heterocephalus_glaber_female
ENSCING00000013458	-	84	32.794	ENSHGLG00100018786	EXOSC4	94	32.794	Heterocephalus_glaber_male
ENSCING00000013458	-	88	30.196	ENSHCOG00000018875	exosc4	93	30.196	Hippocampus_comes
ENSCING00000013458	-	96	39.114	ENSHCOG00000012112	exosc6	97	39.114	Hippocampus_comes
ENSCING00000013458	-	95	39.326	ENSIPUG00000004761	exosc6	97	40.293	Ictalurus_punctatus
ENSCING00000013458	-	85	31.727	ENSIPUG00000011922	Exosc4	95	31.727	Ictalurus_punctatus
ENSCING00000013458	-	94	33.813	ENSSTOG00000006849	EXOSC6	97	33.216	Ictidomys_tridecemlineatus
ENSCING00000013458	-	84	30.290	ENSSTOG00000002632	EXOSC4	92	30.290	Ictidomys_tridecemlineatus
ENSCING00000013458	-	96	38.971	ENSKMAG00000009821	exosc6	97	38.971	Kryptolebias_marmoratus
ENSCING00000013458	-	85	30.120	ENSLBEG00000012754	exosc4	95	30.120	Labrus_bergylta
ENSCING00000013458	-	94	37.594	ENSLBEG00000018680	exosc6	84	38.603	Labrus_bergylta
ENSCING00000013458	-	96	41.697	ENSLOCG00000017597	exosc6	97	41.697	Lepisosteus_oculatus
ENSCING00000013458	-	85	31.967	ENSLOCG00000008878	exosc4	95	31.967	Lepisosteus_oculatus
ENSCING00000013458	-	94	32.014	ENSMFAG00000035562	EXOSC6	97	32.982	Macaca_fascicularis
ENSCING00000013458	-	94	31.655	ENSMMUG00000048384	EXOSC6	97	32.632	Macaca_mulatta
ENSCING00000013458	-	85	30.924	ENSMAMG00000014749	exosc4	95	30.924	Mastacembelus_armatus
ENSCING00000013458	-	96	40.221	ENSMAMG00000016983	exosc6	97	40.221	Mastacembelus_armatus
ENSCING00000013458	-	96	38.828	ENSMZEG00005010720	exosc6	97	38.828	Maylandia_zebra
ENSCING00000013458	-	85	31.474	ENSMZEG00005025086	exosc4	95	31.474	Maylandia_zebra
ENSCING00000013458	-	94	33.094	ENSMAUG00000008040	Exosc6	97	32.509	Mesocricetus_auratus
ENSCING00000013458	-	94	33.094	ENSMICG00000027202	EXOSC6	97	32.509	Microcebus_murinus
ENSCING00000013458	-	94	32.734	ENSMOCG00000003020	Exosc6	97	32.155	Microtus_ochrogaster
ENSCING00000013458	-	89	34.000	ENSMMOG00000002581	exosc6	97	31.734	Mola_mola
ENSCING00000013458	-	79	32.159	ENSMODG00000010435	EXOSC4	99	32.159	Monodelphis_domestica
ENSCING00000013458	-	96	39.338	ENSMALG00000007871	exosc6	93	39.338	Monopterus_albus
ENSCING00000013458	-	85	30.522	ENSMALG00000020564	exosc4	95	30.522	Monopterus_albus
ENSCING00000013458	-	84	30.833	MGP_CAROLIEiJ_G0019919	Exosc4	92	30.833	Mus_caroli
ENSCING00000013458	-	84	30.833	ENSMUSG00000034259	Exosc4	79	44.444	Mus_musculus
ENSCING00000013458	-	94	33.569	ENSMUSG00000109941	Exosc6	97	32.986	Mus_musculus
ENSCING00000013458	-	84	30.833	MGP_SPRETEiJ_G0020822	Exosc4	92	30.833	Mus_spretus
ENSCING00000013458	-	84	30.417	ENSNGAG00000022428	Exosc4	92	30.417	Nannospalax_galili
ENSCING00000013458	-	85	31.474	ENSNBRG00000012326	exosc4	95	31.474	Neolamprologus_brichardi
ENSCING00000013458	-	96	38.745	ENSNBRG00000007400	exosc6	97	38.745	Neolamprologus_brichardi
ENSCING00000013458	-	87	30.000	ENSMEUG00000011002	EXOSC4	96	30.000	Notamacropus_eugenii
ENSCING00000013458	-	84	30.579	ENSODEG00000013951	EXOSC4	93	30.579	Octodon_degus
ENSCING00000013458	-	94	33.453	ENSODEG00000020448	EXOSC6	97	32.979	Octodon_degus
ENSCING00000013458	-	96	37.544	ENSONIG00000011184	exosc6	98	37.544	Oreochromis_niloticus
ENSCING00000013458	-	85	30.924	ENSONIG00000009617	exosc4	95	30.924	Oreochromis_niloticus
ENSCING00000013458	-	96	40.959	ENSORLG00000013325	exosc6	97	41.328	Oryzias_latipes
ENSCING00000013458	-	85	31.325	ENSORLG00000017295	exosc4	95	31.325	Oryzias_latipes
ENSCING00000013458	-	96	40.959	ENSORLG00020017597	exosc6	97	41.328	Oryzias_latipes_hni
ENSCING00000013458	-	85	31.325	ENSORLG00020009788	exosc4	95	31.325	Oryzias_latipes_hni
ENSCING00000013458	-	85	31.325	ENSORLG00015009754	exosc4	95	31.325	Oryzias_latipes_hsok
ENSCING00000013458	-	96	41.697	ENSORLG00015007795	exosc6	97	41.697	Oryzias_latipes_hsok
ENSCING00000013458	-	96	42.066	ENSOMEG00000014317	exosc6	98	42.066	Oryzias_melastigma
ENSCING00000013458	-	85	30.924	ENSOMEG00000005800	exosc4	95	30.924	Oryzias_melastigma
ENSCING00000013458	-	84	30.579	ENSOGAG00000007411	EXOSC4	93	30.579	Otolemur_garnettii
ENSCING00000013458	-	94	33.813	ENSOGAG00000034381	EXOSC6	97	33.216	Otolemur_garnettii
ENSCING00000013458	-	94	31.655	ENSPPRG00000021385	EXOSC6	97	33.216	Panthera_pardus
ENSCING00000013458	-	94	32.734	ENSPTRG00000008296	EXOSC6	97	32.509	Pan_troglodytes
ENSCING00000013458	-	94	31.655	ENSPANG00000003331	EXOSC6	97	32.632	Papio_anubis
ENSCING00000013458	-	85	33.200	ENSPKIG00000018362	exosc4	95	33.200	Paramormyrops_kingsleyae
ENSCING00000013458	-	96	42.066	ENSPKIG00000022020	exosc6	97	43.750	Paramormyrops_kingsleyae
ENSCING00000013458	-	71	44.878	ENSPMGG00000016974	exosc6	84	44.878	Periophthalmus_magnuspinnatus
ENSCING00000013458	-	85	30.677	ENSPMGG00000019307	exosc4	95	30.677	Periophthalmus_magnuspinnatus
ENSCING00000013458	-	89	32.075	ENSPMAG00000001175	exosc4	98	32.075	Petromyzon_marinus
ENSCING00000013458	-	96	31.560	ENSPCIG00000010685	EXOSC6	88	32.862	Phascolarctos_cinereus
ENSCING00000013458	-	88	30.040	ENSPCIG00000009102	EXOSC4	97	30.040	Phascolarctos_cinereus
ENSCING00000013458	-	94	33.579	ENSPCIG00000006274	-	78	32.862	Phascolarctos_cinereus
ENSCING00000013458	-	85	30.924	ENSPFOG00000015214	exosc4	95	30.924	Poecilia_formosa
ENSCING00000013458	-	96	40.221	ENSPFOG00000015869	exosc6	97	40.221	Poecilia_formosa
ENSCING00000013458	-	96	39.852	ENSPLAG00000014150	exosc6	97	39.852	Poecilia_latipinna
ENSCING00000013458	-	85	30.924	ENSPLAG00000018751	exosc4	95	30.924	Poecilia_latipinna
ENSCING00000013458	-	96	40.221	ENSPMEG00000019665	exosc6	97	40.221	Poecilia_mexicana
ENSCING00000013458	-	85	30.924	ENSPMEG00000023116	exosc4	95	30.924	Poecilia_mexicana
ENSCING00000013458	-	96	40.221	ENSPREG00000019548	exosc6	97	40.221	Poecilia_reticulata
ENSCING00000013458	-	85	31.325	ENSPREG00000009632	exosc4	95	31.325	Poecilia_reticulata
ENSCING00000013458	-	94	32.734	ENSPPYG00000007545	EXOSC6	97	32.509	Pongo_abelii
ENSCING00000013458	-	99	32.990	ENSPCAG00000012874	EXOSC6	99	32.990	Procavia_capensis
ENSCING00000013458	-	56	35.802	ENSPCOG00000020992	EXOSC4	93	30.579	Propithecus_coquereli
ENSCING00000013458	-	94	33.813	ENSPVAG00000000668	EXOSC6	97	33.216	Pteropus_vampyrus
ENSCING00000013458	-	96	39.338	ENSPNYG00000010784	exosc6	97	39.338	Pundamilia_nyererei
ENSCING00000013458	-	85	31.474	ENSPNYG00000014429	exosc4	95	31.474	Pundamilia_nyererei
ENSCING00000013458	-	96	39.405	ENSPNAG00000008453	exosc6	97	39.405	Pygocentrus_nattereri
ENSCING00000013458	-	94	32.374	ENSRNOG00000018582	Exosc6	97	32.862	Rattus_norvegicus
ENSCING00000013458	-	94	30.576	ENSRBIG00000003409	EXOSC6	97	30.690	Rhinopithecus_bieti
ENSCING00000013458	-	96	33.935	ENSSHAG00000004175	EXOSC6	97	33.935	Sarcophilus_harrisii
ENSCING00000013458	-	69	40.909	ENSSFOG00015011830	exosc6	83	40.909	Scleropages_formosus
ENSCING00000013458	-	85	31.048	ENSSFOG00015004133	exosc4	95	31.048	Scleropages_formosus
ENSCING00000013458	-	96	39.114	ENSSMAG00000014550	exosc6	97	39.114	Scophthalmus_maximus
ENSCING00000013458	-	86	31.373	ENSSMAG00000020020	exosc4	98	31.373	Scophthalmus_maximus
ENSCING00000013458	-	85	30.924	ENSSDUG00000018966	exosc4	95	30.924	Seriola_dumerili
ENSCING00000013458	-	95	39.777	ENSSDUG00000021109	exosc6	96	39.777	Seriola_dumerili
ENSCING00000013458	-	85	30.924	ENSSLDG00000008003	exosc4	95	30.924	Seriola_lalandi_dorsalis
ENSCING00000013458	-	99	39.427	ENSSLDG00000017776	exosc6	98	39.427	Seriola_lalandi_dorsalis
ENSCING00000013458	-	63	30.481	ENSSPUG00000009644	EXOSC4	83	30.481	Sphenodon_punctatus
ENSCING00000013458	-	96	40.441	ENSSPAG00000001379	exosc6	97	40.441	Stegastes_partitus
ENSCING00000013458	-	85	30.924	ENSSPAG00000016707	exosc4	88	30.924	Stegastes_partitus
ENSCING00000013458	-	94	34.173	ENSSSCG00000002719	EXOSC6	97	33.569	Sus_scrofa
ENSCING00000013458	-	96	39.852	ENSTRUG00000023811	exosc6	84	39.852	Takifugu_rubripes
ENSCING00000013458	-	85	30.242	ENSTRUG00000025054	exosc4	95	30.242	Takifugu_rubripes
ENSCING00000013458	-	96	39.852	ENSTNIG00000004018	exosc6	97	39.852	Tetraodon_nigroviridis
ENSCING00000013458	-	96	36.957	ENSXETG00000007667	exosc6	96	36.957	Xenopus_tropicalis
ENSCING00000013458	-	85	30.242	ENSXCOG00000015017	exosc4	95	30.242	Xiphophorus_couchianus
ENSCING00000013458	-	96	40.590	ENSXCOG00000013623	exosc6	97	40.590	Xiphophorus_couchianus
ENSCING00000013458	-	85	30.242	ENSXMAG00000016287	exosc4	95	30.242	Xiphophorus_maculatus
ENSCING00000013458	-	96	40.221	ENSXMAG00000006280	exosc6	97	40.221	Xiphophorus_maculatus