EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000013536 (Gene tree)
Gene ID: 100185388
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 396 bases
Position: chr4:3237211-3237606
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000024810	LSM	PF01423.22	5.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000025056	-	396	-	ENSCINP00000024810	132 (aa)	-	F6YVQ1

Gene Model

Click here to download ENSCING00000013536's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000013536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000013536	-	99	67.424	ENSG00000175324	LSM1	89	82.051	Homo_sapiens
ENSCING00000013536	-	100	62.879	ENSAPOG00000010833	lsm1	99	63.636	Acanthochromis_polyacanthus
ENSCING00000013536	-	99	67.424	ENSAMEG00000011141	LSM1	99	67.424	Ailuropoda_melanoleuca
ENSCING00000013536	-	62	75.610	ENSACIG00000019593	lsm1	68	75.610	Amphilophus_citrinellus
ENSCING00000013536	-	100	62.879	ENSAOCG00000017096	lsm1	99	63.636	Amphiprion_ocellaris
ENSCING00000013536	-	100	62.879	ENSAOCG00000017997	-	99	63.636	Amphiprion_ocellaris
ENSCING00000013536	-	100	62.879	ENSAPEG00000011669	lsm1	99	63.636	Amphiprion_percula
ENSCING00000013536	-	100	62.121	ENSATEG00000022266	lsm1	99	62.879	Anabas_testudineus
ENSCING00000013536	-	99	67.424	ENSANAG00000027785	LSM1	89	82.051	Aotus_nancymaae
ENSCING00000013536	-	100	62.121	ENSACLG00000011400	lsm1	99	62.879	Astatotilapia_calliptera
ENSCING00000013536	-	100	68.421	ENSAMXG00000005441	lsm1	100	68.421	Astyanax_mexicanus
ENSCING00000013536	-	92	71.311	ENSBTAG00000001612	LSM1	92	71.311	Bos_taurus
ENSCING00000013536	-	81	47.414	WBGene00003076	lsm-1	61	57.895	Caenorhabditis_elegans
ENSCING00000013536	-	92	71.311	ENSCJAG00000048015	LSM1	89	82.051	Callithrix_jacchus
ENSCING00000013536	-	99	67.424	ENSCAFG00000006113	LSM1	99	67.424	Canis_familiaris
ENSCING00000013536	-	99	67.424	ENSCAFG00020001822	LSM1	99	67.424	Canis_lupus_dingo
ENSCING00000013536	-	99	67.424	ENSCHIG00000013194	LSM1	99	67.424	Capra_hircus
ENSCING00000013536	-	99	67.424	ENSTSYG00000010394	LSM1	89	82.051	Carlito_syrichta
ENSCING00000013536	-	99	67.424	ENSCPOG00000032671	LSM1	99	67.424	Cavia_porcellus
ENSCING00000013536	-	99	67.424	ENSCCAG00000037171	LSM1	89	82.051	Cebus_capucinus
ENSCING00000013536	-	99	67.424	ENSCATG00000020377	LSM1	89	82.051	Cercocebus_atys
ENSCING00000013536	-	99	65.909	ENSCLAG00000001137	LSM1	99	65.909	Chinchilla_lanigera
ENSCING00000013536	-	99	67.424	ENSCSAG00000015485	LSM1	99	67.424	Chlorocebus_sabaeus
ENSCING00000013536	-	100	67.424	ENSCHOG00000006030	LSM1	98	67.424	Choloepus_hoffmanni
ENSCING00000013536	-	95	61.905	ENSCPBG00000006569	LSM1	85	61.905	Chrysemys_picta_bellii
ENSCING00000013536	-	99	67.424	ENSCANG00000019173	LSM1	89	82.051	Colobus_angolensis_palliatus
ENSCING00000013536	-	81	59.821	ENSCGRG00001002259	-	84	63.918	Cricetulus_griseus_chok1gshd
ENSCING00000013536	-	99	66.667	ENSCGRG00001024560	-	99	66.667	Cricetulus_griseus_chok1gshd
ENSCING00000013536	-	99	66.667	ENSCGRG00000006554	-	99	66.667	Cricetulus_griseus_crigri
ENSCING00000013536	-	81	59.821	ENSCGRG00000013603	-	84	63.918	Cricetulus_griseus_crigri
ENSCING00000013536	-	100	62.879	ENSCSEG00000010570	lsm1	90	62.879	Cynoglossus_semilaevis
ENSCING00000013536	-	100	62.121	ENSCSEG00000008319	lsm1	90	62.121	Cynoglossus_semilaevis
ENSCING00000013536	-	100	62.121	ENSCVAG00000003871	lsm1	99	62.879	Cyprinodon_variegatus
ENSCING00000013536	-	100	67.669	ENSDARG00000043177	lsm1	100	67.669	Danio_rerio
ENSCING00000013536	-	99	66.667	ENSDNOG00000032911	-	99	66.667	Dasypus_novemcinctus
ENSCING00000013536	-	99	67.424	ENSDNOG00000046387	-	99	67.424	Dasypus_novemcinctus
ENSCING00000013536	-	90	52.101	ENSDNOG00000046620	-	83	55.556	Dasypus_novemcinctus
ENSCING00000013536	-	100	62.406	ENSDNOG00000030989	-	100	62.406	Dasypus_novemcinctus
ENSCING00000013536	-	99	67.424	ENSDORG00000028172	Lsm1	99	67.424	Dipodomys_ordii
ENSCING00000013536	-	92	63.115	FBgn0261067	LSm1	89	63.115	Drosophila_melanogaster
ENSCING00000013536	-	99	66.667	ENSEASG00005016677	LSM1	99	66.667	Equus_asinus_asinus
ENSCING00000013536	-	99	66.667	ENSECAG00000010461	LSM1	99	66.667	Equus_caballus
ENSCING00000013536	-	73	71.875	ENSEEUG00000015181	LSM1	97	71.875	Erinaceus_europaeus
ENSCING00000013536	-	99	65.152	ENSELUG00000023374	lsm1	99	65.152	Esox_lucius
ENSCING00000013536	-	100	62.879	ENSELUG00000002322	lsm1	99	63.636	Esox_lucius
ENSCING00000013536	-	99	67.424	ENSFCAG00000039335	LSM1	89	82.051	Felis_catus
ENSCING00000013536	-	89	64.957	ENSFALG00000006723	LSM1	99	64.957	Ficedula_albicollis
ENSCING00000013536	-	99	67.424	ENSFDAG00000007658	LSM1	99	67.424	Fukomys_damarensis
ENSCING00000013536	-	100	62.121	ENSFHEG00000009556	lsm1	99	62.879	Fundulus_heteroclitus
ENSCING00000013536	-	100	61.364	ENSGMOG00000016651	lsm1	97	62.121	Gadus_morhua
ENSCING00000013536	-	99	67.424	ENSGALG00000003245	LSM1	99	67.424	Gallus_gallus
ENSCING00000013536	-	100	62.121	ENSGAFG00000011355	lsm1	99	62.879	Gambusia_affinis
ENSCING00000013536	-	100	62.121	ENSGACG00000011763	lsm1	96	62.121	Gasterosteus_aculeatus
ENSCING00000013536	-	99	68.939	ENSGAGG00000024065	LSM1	99	68.939	Gopherus_agassizii
ENSCING00000013536	-	99	67.424	ENSGGOG00000022658	LSM1	89	82.051	Gorilla_gorilla
ENSCING00000013536	-	100	62.121	ENSHBUG00000010897	lsm1	99	62.879	Haplochromis_burtoni
ENSCING00000013536	-	99	67.424	ENSHGLG00000005711	LSM1	99	67.424	Heterocephalus_glaber_female
ENSCING00000013536	-	92	57.025	ENSHGLG00000017574	-	75	61.616	Heterocephalus_glaber_female
ENSCING00000013536	-	92	57.025	ENSHGLG00100012152	-	75	61.616	Heterocephalus_glaber_male
ENSCING00000013536	-	99	67.424	ENSHGLG00100017660	LSM1	99	67.424	Heterocephalus_glaber_male
ENSCING00000013536	-	100	62.879	ENSHCOG00000017233	lsm1	99	63.636	Hippocampus_comes
ENSCING00000013536	-	100	67.669	ENSIPUG00000002312	LSM1	100	67.669	Ictalurus_punctatus
ENSCING00000013536	-	58	84.416	ENSSTOG00000026870	LSM1	94	84.416	Ictidomys_tridecemlineatus
ENSCING00000013536	-	99	67.424	ENSJJAG00000014605	-	99	67.424	Jaculus_jaculus
ENSCING00000013536	-	100	62.121	ENSKMAG00000003016	lsm1	99	62.879	Kryptolebias_marmoratus
ENSCING00000013536	-	100	62.121	ENSLBEG00000022352	lsm1	99	62.879	Labrus_bergylta
ENSCING00000013536	-	89	63.866	ENSLACG00000010947	LSM1	97	64.957	Latimeria_chalumnae
ENSCING00000013536	-	99	67.424	ENSLOCG00000015149	lsm1	99	67.424	Lepisosteus_oculatus
ENSCING00000013536	-	99	67.424	ENSLAFG00000003534	LSM1	99	67.424	Loxodonta_africana
ENSCING00000013536	-	99	67.424	ENSMFAG00000032661	LSM1	89	82.051	Macaca_fascicularis
ENSCING00000013536	-	99	67.424	ENSMLEG00000034535	LSM1	89	82.051	Mandrillus_leucophaeus
ENSCING00000013536	-	100	62.121	ENSMAMG00000007464	lsm1	99	62.879	Mastacembelus_armatus
ENSCING00000013536	-	100	62.121	ENSMZEG00005010321	lsm1	99	62.879	Maylandia_zebra
ENSCING00000013536	-	93	70.732	ENSMGAG00000002125	LSM1	92	70.732	Meleagris_gallopavo
ENSCING00000013536	-	99	67.424	ENSMICG00000030726	LSM1	89	82.051	Microcebus_murinus
ENSCING00000013536	-	99	66.667	ENSMOCG00000022817	Lsm1	99	66.667	Microtus_ochrogaster
ENSCING00000013536	-	100	62.879	ENSMMOG00000015466	lsm1	99	63.636	Mola_mola
ENSCING00000013536	-	99	69.697	ENSMODG00000010732	-	99	69.697	Monodelphis_domestica
ENSCING00000013536	-	58	79.221	ENSMALG00000001478	lsm1	82	79.221	Monopterus_albus
ENSCING00000013536	-	99	65.909	MGP_CAROLIEiJ_G0030930	Lsm1	99	65.909	Mus_caroli
ENSCING00000013536	-	99	65.909	ENSMUSG00000037296	Lsm1	91	82.051	Mus_musculus
ENSCING00000013536	-	99	65.909	MGP_PahariEiJ_G0021400	Lsm1	99	65.909	Mus_pahari
ENSCING00000013536	-	99	65.909	MGP_SPRETEiJ_G0032049	Lsm1	99	65.909	Mus_spretus
ENSCING00000013536	-	99	68.182	ENSMPUG00000009883	LSM1	99	68.182	Mustela_putorius_furo
ENSCING00000013536	-	99	67.424	ENSMLUG00000003734	LSM1	99	67.424	Myotis_lucifugus
ENSCING00000013536	-	99	67.424	ENSNGAG00000003753	Lsm1	99	67.424	Nannospalax_galili
ENSCING00000013536	-	62	75.610	ENSNBRG00000017370	lsm1	71	75.610	Neolamprologus_brichardi
ENSCING00000013536	-	99	67.424	ENSNLEG00000029390	LSM1	89	82.051	Nomascus_leucogenys
ENSCING00000013536	-	99	69.697	ENSMEUG00000014077	LSM1	99	69.697	Notamacropus_eugenii
ENSCING00000013536	-	82	66.972	ENSOPRG00000000333	LSM1	93	66.972	Ochotona_princeps
ENSCING00000013536	-	99	67.424	ENSODEG00000004834	LSM1	99	67.424	Octodon_degus
ENSCING00000013536	-	100	62.121	ENSONIG00000010782	lsm1	99	62.879	Oreochromis_niloticus
ENSCING00000013536	-	99	69.697	ENSOANG00000003256	LSM1	99	69.697	Ornithorhynchus_anatinus
ENSCING00000013536	-	99	67.424	ENSOCUG00000015399	LSM1	99	67.424	Oryctolagus_cuniculus
ENSCING00000013536	-	100	62.879	ENSORLG00000030288	lsm1	99	63.636	Oryzias_latipes
ENSCING00000013536	-	100	63.910	ENSORLG00020006213	-	86	63.910	Oryzias_latipes_hni
ENSCING00000013536	-	100	62.879	ENSORLG00020003941	lsm1	99	63.636	Oryzias_latipes_hni
ENSCING00000013536	-	100	62.879	ENSORLG00015018350	lsm1	99	63.636	Oryzias_latipes_hsok
ENSCING00000013536	-	100	62.879	ENSOMEG00000012454	lsm1	98	62.879	Oryzias_melastigma
ENSCING00000013536	-	99	67.424	ENSOGAG00000015161	LSM1	99	67.424	Otolemur_garnettii
ENSCING00000013536	-	99	67.424	ENSOARG00000001317	LSM1	99	67.424	Ovis_aries
ENSCING00000013536	-	99	67.424	ENSPPAG00000032279	LSM1	89	82.051	Pan_paniscus
ENSCING00000013536	-	99	67.424	ENSPPRG00000014172	-	89	82.051	Panthera_pardus
ENSCING00000013536	-	99	67.424	ENSPTIG00000010289	LSM1	89	82.051	Panthera_tigris_altaica
ENSCING00000013536	-	99	67.424	ENSPTRG00000020169	LSM1	89	82.051	Pan_troglodytes
ENSCING00000013536	-	99	67.424	ENSPANG00000008814	LSM1	89	82.051	Papio_anubis
ENSCING00000013536	-	99	68.182	ENSPKIG00000001839	lsm1	99	68.182	Paramormyrops_kingsleyae
ENSCING00000013536	-	99	68.182	ENSPKIG00000019409	LSM1	99	68.182	Paramormyrops_kingsleyae
ENSCING00000013536	-	97	62.791	ENSPSIG00000012563	LSM1	98	62.791	Pelodiscus_sinensis
ENSCING00000013536	-	58	79.221	ENSPMGG00000022999	lsm1	73	79.221	Periophthalmus_magnuspinnatus
ENSCING00000013536	-	84	64.286	ENSPMAG00000002671	lsm1	99	64.286	Petromyzon_marinus
ENSCING00000013536	-	99	70.455	ENSPCIG00000008880	LSM1	99	70.455	Phascolarctos_cinereus
ENSCING00000013536	-	100	62.121	ENSPFOG00000016029	lsm1	99	62.879	Poecilia_formosa
ENSCING00000013536	-	100	62.121	ENSPLAG00000007879	lsm1	99	62.879	Poecilia_latipinna
ENSCING00000013536	-	100	62.121	ENSPMEG00000023550	lsm1	99	62.879	Poecilia_mexicana
ENSCING00000013536	-	100	62.121	ENSPREG00000009574	lsm1	99	62.879	Poecilia_reticulata
ENSCING00000013536	-	99	67.424	ENSPPYG00000018521	LSM1	99	67.424	Pongo_abelii
ENSCING00000013536	-	99	67.424	ENSPCOG00000020901	-	89	82.051	Propithecus_coquereli
ENSCING00000013536	-	99	67.424	ENSPVAG00000006016	LSM1	99	67.424	Pteropus_vampyrus
ENSCING00000013536	-	100	62.121	ENSPNYG00000018067	lsm1	99	62.879	Pundamilia_nyererei
ENSCING00000013536	-	100	67.669	ENSPNAG00000013707	lsm1	100	67.669	Pygocentrus_nattereri
ENSCING00000013536	-	99	66.667	ENSRNOG00000015375	Lsm1	99	66.667	Rattus_norvegicus
ENSCING00000013536	-	99	67.424	ENSRBIG00000027449	LSM1	89	82.051	Rhinopithecus_bieti
ENSCING00000013536	-	99	67.424	ENSRROG00000036074	LSM1	89	82.051	Rhinopithecus_roxellana
ENSCING00000013536	-	99	69.697	ENSSHAG00000017260	LSM1	99	69.697	Sarcophilus_harrisii
ENSCING00000013536	-	99	68.182	ENSSFOG00015019528	lsm1	99	68.182	Scleropages_formosus
ENSCING00000013536	-	100	62.121	ENSSMAG00000004930	lsm1	99	62.879	Scophthalmus_maximus
ENSCING00000013536	-	100	62.879	ENSSDUG00000021823	lsm1	98	62.879	Seriola_dumerili
ENSCING00000013536	-	100	62.879	ENSSLDG00000012154	lsm1	98	62.879	Seriola_lalandi_dorsalis
ENSCING00000013536	-	99	68.939	ENSSPUG00000014878	LSM1	99	68.939	Sphenodon_punctatus
ENSCING00000013536	-	100	62.121	ENSSPAG00000020548	lsm1	99	62.879	Stegastes_partitus
ENSCING00000013536	-	99	66.667	ENSSSCG00000039058	LSM1	99	66.667	Sus_scrofa
ENSCING00000013536	-	100	68.939	ENSTGUG00000004793	LSM1	98	68.939	Taeniopygia_guttata
ENSCING00000013536	-	100	62.879	ENSTRUG00000025239	lsm1	99	63.636	Takifugu_rubripes
ENSCING00000013536	-	99	63.636	ENSTNIG00000004055	lsm1	99	63.636	Tetraodon_nigroviridis
ENSCING00000013536	-	87	62.931	ENSTBEG00000015884	LSM1	99	62.931	Tupaia_belangeri
ENSCING00000013536	-	99	67.424	ENSTTRG00000004482	LSM1	99	67.424	Tursiops_truncatus
ENSCING00000013536	-	99	67.424	ENSUAMG00000004103	LSM1	99	67.424	Ursus_americanus
ENSCING00000013536	-	99	67.424	ENSUMAG00000009132	LSM1	99	67.424	Ursus_maritimus
ENSCING00000013536	-	58	83.117	ENSVPAG00000011593	LSM1	100	83.117	Vicugna_pacos
ENSCING00000013536	-	61	58.750	ENSVVUG00000014880	-	85	58.750	Vulpes_vulpes
ENSCING00000013536	-	99	67.424	ENSVVUG00000020191	LSM1	99	67.424	Vulpes_vulpes
ENSCING00000013536	-	99	66.912	ENSXETG00000009004	lsm1	99	66.912	Xenopus_tropicalis
ENSCING00000013536	-	100	62.879	ENSXCOG00000015631	lsm1	98	62.879	Xiphophorus_couchianus
ENSCING00000013536	-	100	62.879	ENSXMAG00000026637	lsm1	98	62.879	Xiphophorus_maculatus