EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000013568 (Gene tree)
Gene ID: 100175132
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1947 bases
Position: chr4:2472636-2474582
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000024858	RRM_1	PF00076.22	2.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000025104	-	1183	-	ENSCINP00000024858	260 (aa)	-	F6YBL5

Gene Model

Click here to download ENSCING00000013568's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03013	RNA transport	KEGG
cin03015	mRNA surveillance pathway	KEGG
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000013568's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000013568	-	99	45.693	ENSAPOG00000000183	-	70	50.000	Acanthochromis_polyacanthus
ENSCING00000013568	-	98	45.588	ENSACIG00000006351	alyref	97	47.826	Amphilophus_citrinellus
ENSCING00000013568	-	99	38.732	ENSACIG00000020351	-	99	41.727	Amphilophus_citrinellus
ENSCING00000013568	-	99	44.876	ENSAOCG00000014012	alyref	99	47.810	Amphiprion_ocellaris
ENSCING00000013568	-	99	45.211	ENSAOCG00000019305	-	98	43.629	Amphiprion_ocellaris
ENSCING00000013568	-	99	46.360	ENSAPEG00000013527	-	98	43.243	Amphiprion_percula
ENSCING00000013568	-	99	44.876	ENSAPEG00000014603	alyref	99	47.810	Amphiprion_percula
ENSCING00000013568	-	99	42.907	ENSATEG00000004307	alyref	99	46.263	Anabas_testudineus
ENSCING00000013568	-	98	45.283	ENSATEG00000000382	-	98	44.074	Anabas_testudineus
ENSCING00000013568	-	98	42.222	ENSACLG00000010184	-	68	47.027	Astatotilapia_calliptera
ENSCING00000013568	-	99	46.014	ENSACLG00000008432	alyref	99	47.253	Astatotilapia_calliptera
ENSCING00000013568	-	99	46.528	ENSAMXG00000007359	alyref	99	50.890	Astyanax_mexicanus
ENSCING00000013568	-	100	74.809	ENSCSAVG00000003324	-	100	70.611	Ciona_savignyi
ENSCING00000013568	-	99	45.035	ENSCSEG00000017800	alyref	99	44.649	Cynoglossus_semilaevis
ENSCING00000013568	-	99	45.520	ENSCVAG00000014869	alyref	99	46.763	Cyprinodon_variegatus
ENSCING00000013568	-	99	42.085	ENSCVAG00000007789	-	98	40.075	Cyprinodon_variegatus
ENSCING00000013568	-	99	43.345	ENSDARG00000077732	alyref	99	45.139	Danio_rerio
ENSCING00000013568	-	99	41.935	FBgn0010774	Ref1	99	40.217	Drosophila_melanogaster
ENSCING00000013568	-	68	52.128	ENSEBUG00000008253	alyref	66	49.730	Eptatretus_burgeri
ENSCING00000013568	-	72	40.838	ENSEBUG00000006305	alyref	77	44.271	Eptatretus_burgeri
ENSCING00000013568	-	99	47.653	ENSELUG00000008849	-	99	47.887	Esox_lucius
ENSCING00000013568	-	99	46.127	ENSELUG00000017178	alyref	99	49.097	Esox_lucius
ENSCING00000013568	-	56	58.940	ENSFALG00000011923	-	94	54.375	Ficedula_albicollis
ENSCING00000013568	-	99	42.471	ENSFHEG00000004698	-	98	40.299	Fundulus_heteroclitus
ENSCING00000013568	-	99	47.482	ENSFHEG00000019426	alyref	99	49.818	Fundulus_heteroclitus
ENSCING00000013568	-	99	46.043	ENSGMOG00000009882	alyref	99	45.745	Gadus_morhua
ENSCING00000013568	-	70	48.223	ENSGMOG00000013122	-	61	53.906	Gadus_morhua
ENSCING00000013568	-	99	42.412	ENSGAFG00000007573	-	98	38.433	Gambusia_affinis
ENSCING00000013568	-	99	44.170	ENSGAFG00000006014	alyref	99	45.848	Gambusia_affinis
ENSCING00000013568	-	99	46.014	ENSHBUG00000020196	alyref	99	47.253	Haplochromis_burtoni
ENSCING00000013568	-	98	42.647	ENSHBUG00000001454	-	68	48.925	Haplochromis_burtoni
ENSCING00000013568	-	98	42.424	ENSHCOG00000012825	-	64	44.751	Hippocampus_comes
ENSCING00000013568	-	98	46.290	ENSIPUG00000009469	alyref	99	44.286	Ictalurus_punctatus
ENSCING00000013568	-	77	45.226	ENSSTOG00000016570	-	90	49.198	Ictidomys_tridecemlineatus
ENSCING00000013568	-	99	46.718	ENSKMAG00000006462	-	72	50.270	Kryptolebias_marmoratus
ENSCING00000013568	-	99	45.936	ENSKMAG00000008912	alyref	99	47.826	Kryptolebias_marmoratus
ENSCING00000013568	-	99	41.176	ENSLBEG00000005387	-	68	46.632	Labrus_bergylta
ENSCING00000013568	-	98	49.213	ENSLBEG00000023118	alyref	90	46.479	Labrus_bergylta
ENSCING00000013568	-	99	41.455	ENSLBEG00000012930	-	99	39.552	Labrus_bergylta
ENSCING00000013568	-	58	53.988	ENSLOCG00000013879	alyref	65	56.051	Lepisosteus_oculatus
ENSCING00000013568	-	99	40.659	ENSMAMG00000005464	-	69	44.503	Mastacembelus_armatus
ENSCING00000013568	-	99	46.290	ENSMAMG00000003034	alyref	99	48.736	Mastacembelus_armatus
ENSCING00000013568	-	99	46.014	ENSMZEG00005008639	alyref	99	47.253	Maylandia_zebra
ENSCING00000013568	-	98	42.222	ENSMZEG00005012096	-	68	47.027	Maylandia_zebra
ENSCING00000013568	-	98	46.545	ENSMMOG00000012458	alyref	96	46.014	Mola_mola
ENSCING00000013568	-	99	39.245	ENSMMOG00000007032	-	71	44.565	Mola_mola
ENSCING00000013568	-	99	42.857	ENSMALG00000006054	-	98	42.066	Monopterus_albus
ENSCING00000013568	-	99	43.728	ENSMLUG00000006521	-	99	42.806	Myotis_lucifugus
ENSCING00000013568	-	98	42.373	ENSMLUG00000022467	-	98	40.138	Myotis_lucifugus
ENSCING00000013568	-	79	46.083	ENSMLUG00000028605	-	66	46.231	Myotis_lucifugus
ENSCING00000013568	-	98	40.702	ENSMLUG00000022178	-	98	43.369	Myotis_lucifugus
ENSCING00000013568	-	99	43.214	ENSMLUG00000014372	-	99	42.857	Myotis_lucifugus
ENSCING00000013568	-	98	43.158	ENSMLUG00000030671	-	66	44.560	Myotis_lucifugus
ENSCING00000013568	-	99	47.292	ENSMLUG00000004098	-	99	42.857	Myotis_lucifugus
ENSCING00000013568	-	98	43.478	ENSMLUG00000009247	-	70	46.569	Myotis_lucifugus
ENSCING00000013568	-	99	47.584	ENSNGAG00000022014	-	99	48.689	Nannospalax_galili
ENSCING00000013568	-	99	42.909	ENSNBRG00000017460	-	99	43.609	Neolamprologus_brichardi
ENSCING00000013568	-	99	47.122	ENSNBRG00000001747	alyref	99	48.014	Neolamprologus_brichardi
ENSCING00000013568	-	98	42.857	ENSONIG00000003296	-	68	50.000	Oreochromis_niloticus
ENSCING00000013568	-	99	44.983	ENSONIG00000019434	alyref	99	47.500	Oreochromis_niloticus
ENSCING00000013568	-	70	45.055	ENSORLG00000001620	-	51	43.407	Oryzias_latipes
ENSCING00000013568	-	99	45.070	ENSORLG00020011942	alyref	99	46.545	Oryzias_latipes_hni
ENSCING00000013568	-	99	40.590	ENSORLG00020015673	-	98	38.433	Oryzias_latipes_hni
ENSCING00000013568	-	99	45.390	ENSORLG00015022664	alyref	99	46.715	Oryzias_latipes_hsok
ENSCING00000013568	-	99	40.293	ENSORLG00015015143	-	98	39.179	Oryzias_latipes_hsok
ENSCING00000013568	-	99	45.520	ENSOMEG00000019176	alyref	99	47.101	Oryzias_melastigma
ENSCING00000013568	-	99	41.667	ENSOMEG00000007158	-	70	42.553	Oryzias_melastigma
ENSCING00000013568	-	87	44.872	ENSPPAG00000036403	-	67	50.777	Pan_paniscus
ENSCING00000013568	-	99	48.188	ENSPKIG00000007070	alyref	99	46.454	Paramormyrops_kingsleyae
ENSCING00000013568	-	98	46.468	ENSPKIG00000006233	-	56	50.254	Paramormyrops_kingsleyae
ENSCING00000013568	-	68	44.199	ENSPMGG00000012994	-	93	42.778	Periophthalmus_magnuspinnatus
ENSCING00000013568	-	98	43.820	ENSPMGG00000016600	alyref	90	43.728	Periophthalmus_magnuspinnatus
ENSCING00000013568	-	99	43.985	ENSPEMG00000016628	-	99	44.528	Peromyscus_maniculatus_bairdii
ENSCING00000013568	-	99	43.972	ENSPFOG00000022825	alyref	98	45.161	Poecilia_formosa
ENSCING00000013568	-	99	42.146	ENSPFOG00000017094	-	98	40.672	Poecilia_formosa
ENSCING00000013568	-	99	44.128	ENSPLAG00000006948	alyref	99	44.964	Poecilia_latipinna
ENSCING00000013568	-	99	42.146	ENSPLAG00000014380	-	98	40.672	Poecilia_latipinna
ENSCING00000013568	-	99	42.146	ENSPMEG00000023039	-	98	40.672	Poecilia_mexicana
ENSCING00000013568	-	99	43.972	ENSPMEG00000003547	alyref	99	45.161	Poecilia_mexicana
ENSCING00000013568	-	99	44.128	ENSPREG00000015795	alyref	99	44.245	Poecilia_reticulata
ENSCING00000013568	-	99	43.295	ENSPREG00000003649	-	99	39.636	Poecilia_reticulata
ENSCING00000013568	-	98	41.636	ENSPNYG00000002879	-	68	44.865	Pundamilia_nyererei
ENSCING00000013568	-	99	46.014	ENSPNYG00000017498	alyref	99	47.253	Pundamilia_nyererei
ENSCING00000013568	-	97	45.956	ENSPNAG00000002531	alyref	99	46.763	Pygocentrus_nattereri
ENSCING00000013568	-	87	47.863	ENSSBOG00000030924	-	81	52.105	Saimiri_boliviensis_boliviensis
ENSCING00000013568	-	99	39.777	ENSSHAG00000012866	-	99	39.245	Sarcophilus_harrisii
ENSCING00000013568	-	99	39.437	ENSSHAG00000000609	-	99	36.727	Sarcophilus_harrisii
ENSCING00000013568	-	78	47.596	ENSSFOG00015003923	alyref	68	48.936	Scleropages_formosus
ENSCING00000013568	-	72	48.020	ENSSFOG00015003678	alyref	82	47.668	Scleropages_formosus
ENSCING00000013568	-	99	43.796	ENSSMAG00000011169	-	98	44.403	Scophthalmus_maximus
ENSCING00000013568	-	99	44.912	ENSSMAG00000009283	alyref	99	45.936	Scophthalmus_maximus
ENSCING00000013568	-	99	45.583	ENSSDUG00000016158	alyref	99	48.175	Seriola_dumerili
ENSCING00000013568	-	99	47.101	ENSSLDG00000017803	alyref	99	48.175	Seriola_lalandi_dorsalis
ENSCING00000013568	-	99	45.489	ENSSPAG00000017028	-	67	48.913	Stegastes_partitus
ENSCING00000013568	-	99	41.489	ENSTRUG00000003051	-	99	41.045	Takifugu_rubripes
ENSCING00000013568	-	99	43.071	ENSTNIG00000014136	-	99	37.692	Tetraodon_nigroviridis
ENSCING00000013568	-	99	44.643	ENSTNIG00000011595	alyref	66	49.468	Tetraodon_nigroviridis
ENSCING00000013568	-	72	49.485	ENSVVUG00000000272	-	80	52.062	Vulpes_vulpes
ENSCING00000013568	-	98	44.245	ENSXCOG00000018047	alyref	72	52.792	Xiphophorus_couchianus
ENSCING00000013568	-	99	42.857	ENSXMAG00000018086	-	99	40.449	Xiphophorus_maculatus
ENSCING00000013568	-	98	44.245	ENSXMAG00000012218	alyref	72	52.792	Xiphophorus_maculatus