EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000014848 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: protein CMSS1-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 42063 bases
Position: chr6:850443-892505
Accession: 100183920
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000026674	CMS1	PF14617.6	5.7e-31	1	1
ENSCINP00000032210	CMS1	PF14617.6	9.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000037299	-	806	-	ENSCINP00000032210	227 (aa)	-	H2XRC6
ENSCINT00000026920	-	963	XM_018812254	ENSCINP00000026674	187 (aa)	XP_018667799	F7BG92

Gene Model

Click here to download ENSCING00000014848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000014848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000014848	-	100	41.176	ENSG00000184220	CMSS1	95	37.273	Homo_sapiens
ENSCING00000014848	-	96	44.444	ENSAPOG00000010604	cmss1	78	42.857	Acanthochromis_polyacanthus
ENSCING00000014848	-	100	40.957	ENSAMEG00000004092	CMSS1	76	39.801	Ailuropoda_melanoleuca
ENSCING00000014848	-	90	40.437	ENSACIG00000021854	cmss1	74	40.437	Amphilophus_citrinellus
ENSCING00000014848	-	96	43.333	ENSAOCG00000013361	cmss1	67	41.837	Amphiprion_ocellaris
ENSCING00000014848	-	96	43.333	ENSAPEG00000005829	cmss1	67	41.837	Amphiprion_percula
ENSCING00000014848	-	99	42.781	ENSATEG00000008209	cmss1	71	42.347	Anabas_testudineus
ENSCING00000014848	-	99	42.246	ENSAPLG00000010542	CMSS1	98	39.035	Anas_platyrhynchos
ENSCING00000014848	-	99	43.316	ENSACAG00000011065	CMSS1	72	42.211	Anolis_carolinensis
ENSCING00000014848	-	100	41.711	ENSANAG00000023565	CMSS1	71	41.361	Aotus_nancymaae
ENSCING00000014848	-	99	44.920	ENSACLG00000027294	cmss1	65	44.737	Astatotilapia_calliptera
ENSCING00000014848	-	99	40.107	ENSAMXG00000002046	cmss1	64	40.314	Astyanax_mexicanus
ENSCING00000014848	-	100	41.711	ENSBTAG00000013663	CMSS1	71	40.500	Bos_taurus
ENSCING00000014848	-	100	41.176	ENSCJAG00000000610	CMSS1	71	40.838	Callithrix_jacchus
ENSCING00000014848	-	99	41.176	ENSCAFG00000009230	CMSS1	71	40.201	Canis_familiaris
ENSCING00000014848	-	100	38.503	ENSCAFG00020024156	-	62	38.191	Canis_lupus_dingo
ENSCING00000014848	-	99	41.176	ENSCAFG00020009464	-	72	40.201	Canis_lupus_dingo
ENSCING00000014848	-	99	42.246	ENSCHIG00000013003	CMSS1	70	41.837	Capra_hircus
ENSCING00000014848	-	99	40.642	ENSTSYG00000009266	CMSS1	76	39.698	Carlito_syrichta
ENSCING00000014848	-	100	38.542	ENSCAPG00000013584	CMSS1	88	38.071	Cavia_aperea
ENSCING00000014848	-	100	42.781	ENSCPOG00000014680	CMSS1	70	41.500	Cavia_porcellus
ENSCING00000014848	-	100	41.176	ENSCCAG00000034685	CMSS1	71	40.838	Cebus_capucinus
ENSCING00000014848	-	100	41.711	ENSCATG00000031980	CMSS1	72	41.327	Cercocebus_atys
ENSCING00000014848	-	100	41.711	ENSCLAG00000011241	CMSS1	84	40.500	Chinchilla_lanigera
ENSCING00000014848	-	100	41.711	ENSCSAG00000006024	CMSS1	77	41.327	Chlorocebus_sabaeus
ENSCING00000014848	-	75	32.857	ENSCHOG00000012098	CMSS1	50	32.857	Choloepus_hoffmanni
ENSCING00000014848	-	68	84.252	ENSCSAVG00000002309	-	100	84.252	Ciona_savignyi
ENSCING00000014848	-	100	41.711	ENSCANG00000031337	CMSS1	72	41.327	Colobus_angolensis_palliatus
ENSCING00000014848	-	99	43.316	ENSCGRG00001014305	Cmss1	71	42.211	Cricetulus_griseus_chok1gshd
ENSCING00000014848	-	99	43.316	ENSCGRG00000006722	Cmss1	77	42.211	Cricetulus_griseus_crigri
ENSCING00000014848	-	99	44.920	ENSCSEG00000004958	cmss1	64	44.737	Cynoglossus_semilaevis
ENSCING00000014848	-	99	44.920	ENSCVAG00000005039	cmss1	77	41.704	Cyprinodon_variegatus
ENSCING00000014848	-	100	39.037	ENSDARG00000112579	cmss1	65	39.791	Danio_rerio
ENSCING00000014848	-	100	41.711	ENSDNOG00000040418	CMSS1	71	40.500	Dasypus_novemcinctus
ENSCING00000014848	-	100	41.711	ENSDORG00000010461	Cmss1	67	41.361	Dipodomys_ordii
ENSCING00000014848	-	70	41.221	ENSEBUG00000002156	-	95	41.221	Eptatretus_burgeri
ENSCING00000014848	-	100	39.037	ENSEASG00005010966	CMSS1	89	38.000	Equus_asinus_asinus
ENSCING00000014848	-	100	40.107	ENSECAG00000015662	CMSS1	86	39.000	Equus_caballus
ENSCING00000014848	-	96	43.889	ENSELUG00000019459	cmss1	75	38.865	Esox_lucius
ENSCING00000014848	-	100	41.711	ENSFCAG00000044577	CMSS1	70	40.500	Felis_catus
ENSCING00000014848	-	99	41.711	ENSFALG00000005816	CMSS1	94	38.938	Ficedula_albicollis
ENSCING00000014848	-	100	41.711	ENSFDAG00000012577	CMSS1	86	40.500	Fukomys_damarensis
ENSCING00000014848	-	99	44.385	ENSFHEG00000012008	cmss1	79	43.878	Fundulus_heteroclitus
ENSCING00000014848	-	96	43.333	ENSGMOG00000016729	cmss1	69	40.000	Gadus_morhua
ENSCING00000014848	-	99	41.711	ENSGALG00000015267	CMSS1	75	40.909	Gallus_gallus
ENSCING00000014848	-	99	43.850	ENSGAFG00000021217	cmss1	73	43.367	Gambusia_affinis
ENSCING00000014848	-	99	44.385	ENSGACG00000002798	cmss1	67	44.211	Gasterosteus_aculeatus
ENSCING00000014848	-	99	44.385	ENSGAGG00000019861	CMSS1	87	41.150	Gopherus_agassizii
ENSCING00000014848	-	100	41.711	ENSGGOG00000014125	CMSS1	72	41.327	Gorilla_gorilla
ENSCING00000014848	-	99	44.920	ENSHBUG00000008431	cmss1	66	44.737	Haplochromis_burtoni
ENSCING00000014848	-	100	40.642	ENSHGLG00000019481	CMSS1	80	39.500	Heterocephalus_glaber_female
ENSCING00000014848	-	100	40.642	ENSHGLG00100010314	CMSS1	78	39.500	Heterocephalus_glaber_male
ENSCING00000014848	-	99	46.524	ENSHCOG00000003222	cmss1	67	45.050	Hippocampus_comes
ENSCING00000014848	-	99	40.642	ENSIPUG00000011591	cmss1	65	40.838	Ictalurus_punctatus
ENSCING00000014848	-	100	40.642	ENSSTOG00000019366	CMSS1	70	39.500	Ictidomys_tridecemlineatus
ENSCING00000014848	-	99	42.246	ENSJJAG00000014894	Cmss1	88	41.206	Jaculus_jaculus
ENSCING00000014848	-	90	39.362	ENSKMAG00000002390	cmss1	80	39.362	Kryptolebias_marmoratus
ENSCING00000014848	-	76	45.070	ENSLBEG00000006298	cmss1	59	45.070	Labrus_bergylta
ENSCING00000014848	-	99	44.385	ENSLACG00000009293	CMSS1	82	43.979	Latimeria_chalumnae
ENSCING00000014848	-	93	40.230	ENSLOCG00000009391	cmss1	60	40.230	Lepisosteus_oculatus
ENSCING00000014848	-	100	43.850	ENSLAFG00000017509	CMSS1	86	42.500	Loxodonta_africana
ENSCING00000014848	-	100	41.176	ENSMFAG00000045006	CMSS1	72	40.816	Macaca_fascicularis
ENSCING00000014848	-	100	40.642	ENSMMUG00000002939	CMSS1	80	39.785	Macaca_mulatta
ENSCING00000014848	-	100	41.176	ENSMNEG00000031315	CMSS1	72	40.816	Macaca_nemestrina
ENSCING00000014848	-	100	41.711	ENSMLEG00000033660	CMSS1	72	41.327	Mandrillus_leucophaeus
ENSCING00000014848	-	99	44.385	ENSMAMG00000017176	cmss1	67	44.388	Mastacembelus_armatus
ENSCING00000014848	-	99	44.920	ENSMZEG00005021886	cmss1	65	44.737	Maylandia_zebra
ENSCING00000014848	-	99	41.711	ENSMGAG00000014360	CMSS1	86	40.909	Meleagris_gallopavo
ENSCING00000014848	-	100	41.711	ENSMICG00000048977	CMSS1	75	40.500	Microcebus_murinus
ENSCING00000014848	-	99	42.246	ENSMOCG00000021937	Cmss1	72	41.206	Microtus_ochrogaster
ENSCING00000014848	-	96	44.444	ENSMMOG00000019794	cmss1	80	43.367	Mola_mola
ENSCING00000014848	-	94	44.886	ENSMODG00000002275	CMSS1	66	44.886	Monodelphis_domestica
ENSCING00000014848	-	99	42.781	ENSMALG00000004250	cmss1	66	42.857	Monopterus_albus
ENSCING00000014848	-	100	42.781	MGP_CAROLIEiJ_G0020824	Cmss1	82	39.474	Mus_caroli
ENSCING00000014848	-	100	42.781	ENSMUSG00000022748	Cmss1	82	39.474	Mus_musculus
ENSCING00000014848	-	100	43.316	MGP_PahariEiJ_G0016524	Cmss1	71	42.000	Mus_pahari
ENSCING00000014848	-	100	42.781	MGP_SPRETEiJ_G0021724	Cmss1	71	41.709	Mus_spretus
ENSCING00000014848	-	99	40.323	ENSMPUG00000011324	CMSS1	75	39.196	Mustela_putorius_furo
ENSCING00000014848	-	100	39.153	ENSMLUG00000001131	CMSS1	75	38.119	Myotis_lucifugus
ENSCING00000014848	-	100	41.711	ENSNGAG00000020316	Cmss1	71	41.206	Nannospalax_galili
ENSCING00000014848	-	99	44.385	ENSNBRG00000003095	cmss1	65	44.211	Neolamprologus_brichardi
ENSCING00000014848	-	100	41.711	ENSNLEG00000034172	CMSS1	72	41.327	Nomascus_leucogenys
ENSCING00000014848	-	94	34.659	ENSMEUG00000014505	CMSS1	84	33.679	Notamacropus_eugenii
ENSCING00000014848	-	99	41.711	ENSOPRG00000002986	CMSS1	71	40.704	Ochotona_princeps
ENSCING00000014848	-	90	40.476	ENSODEG00000001853	-	60	40.476	Octodon_degus
ENSCING00000014848	-	96	43.017	ENSODEG00000005226	-	70	40.500	Octodon_degus
ENSCING00000014848	-	96	41.341	ENSODEG00000003558	-	65	41.341	Octodon_degus
ENSCING00000014848	-	96	35.196	ENSODEG00000009446	-	76	33.668	Octodon_degus
ENSCING00000014848	-	99	45.455	ENSONIG00000006678	cmss1	72	45.263	Oreochromis_niloticus
ENSCING00000014848	-	99	44.385	ENSOANG00000007529	CMSS1	85	43.216	Ornithorhynchus_anatinus
ENSCING00000014848	-	100	41.176	ENSOCUG00000025366	CMSS1	71	40.000	Oryctolagus_cuniculus
ENSCING00000014848	-	99	47.059	ENSORLG00000020340	cmss1	68	46.939	Oryzias_latipes
ENSCING00000014848	-	99	40.000	ENSORLG00020012235	cmss1	81	40.201	Oryzias_latipes_hni
ENSCING00000014848	-	99	40.642	ENSORLG00015015551	cmss1	72	40.816	Oryzias_latipes_hsok
ENSCING00000014848	-	99	45.989	ENSOMEG00000012555	cmss1	65	46.073	Oryzias_melastigma
ENSCING00000014848	-	100	43.316	ENSOGAG00000002045	CMSS1	86	42.000	Otolemur_garnettii
ENSCING00000014848	-	100	42.021	ENSOARG00000017899	CMSS1	68	41.500	Ovis_aries
ENSCING00000014848	-	100	41.711	ENSPPAG00000038515	CMSS1	69	41.327	Pan_paniscus
ENSCING00000014848	-	100	41.711	ENSPPRG00000016767	CMSS1	80	39.565	Panthera_pardus
ENSCING00000014848	-	100	41.711	ENSPTIG00000018274	CMSS1	80	39.565	Panthera_tigris_altaica
ENSCING00000014848	-	100	41.711	ENSPTRG00000015157	CMSS1	77	41.327	Pan_troglodytes
ENSCING00000014848	-	100	41.711	ENSPANG00000019980	CMSS1	75	41.327	Papio_anubis
ENSCING00000014848	-	99	40.642	ENSPKIG00000012609	cmss1	68	40.642	Paramormyrops_kingsleyae
ENSCING00000014848	-	99	44.385	ENSPSIG00000003849	CMSS1	97	41.150	Pelodiscus_sinensis
ENSCING00000014848	-	99	45.745	ENSPMGG00000010286	cmss1	83	45.178	Periophthalmus_magnuspinnatus
ENSCING00000014848	-	99	43.316	ENSPEMG00000016384	Cmss1	70	42.714	Peromyscus_maniculatus_bairdii
ENSCING00000014848	-	99	42.781	ENSPMAG00000001146	cmss1	98	41.584	Petromyzon_marinus
ENSCING00000014848	-	94	44.886	ENSPCIG00000015656	CMSS1	72	43.005	Phascolarctos_cinereus
ENSCING00000014848	-	99	45.455	ENSPFOG00000016849	cmss1	65	45.455	Poecilia_formosa
ENSCING00000014848	-	99	45.455	ENSPLAG00000008323	cmss1	65	45.455	Poecilia_latipinna
ENSCING00000014848	-	99	45.455	ENSPMEG00000021020	cmss1	67	44.898	Poecilia_mexicana
ENSCING00000014848	-	99	45.455	ENSPREG00000007618	cmss1	63	45.455	Poecilia_reticulata
ENSCING00000014848	-	100	41.176	ENSPPYG00000013606	CMSS1	69	40.816	Pongo_abelii
ENSCING00000014848	-	100	42.246	ENSPCOG00000020035	CMSS1	75	41.000	Propithecus_coquereli
ENSCING00000014848	-	99	33.155	ENSPVAG00000017031	CMSS1	80	32.609	Pteropus_vampyrus
ENSCING00000014848	-	85	44.375	ENSPNYG00000013428	cmss1	59	44.172	Pundamilia_nyererei
ENSCING00000014848	-	99	41.711	ENSPNAG00000007912	cmss1	64	41.361	Pygocentrus_nattereri
ENSCING00000014848	-	99	43.316	ENSRNOG00000027888	Cmss1	77	42.211	Rattus_norvegicus
ENSCING00000014848	-	100	42.246	ENSRBIG00000037931	CMSS1	72	41.837	Rhinopithecus_bieti
ENSCING00000014848	-	100	42.246	ENSRROG00000042910	CMSS1	72	41.837	Rhinopithecus_roxellana
ENSCING00000014848	-	100	41.711	ENSSBOG00000030980	CMSS1	71	41.361	Saimiri_boliviensis_boliviensis
ENSCING00000014848	-	93	44.253	ENSSHAG00000009321	CMSS1	75	42.487	Sarcophilus_harrisii
ENSCING00000014848	-	100	40.000	ENSSFOG00015001509	cmss1	79	40.000	Scleropages_formosus
ENSCING00000014848	-	99	44.385	ENSSMAG00000001653	cmss1	65	44.211	Scophthalmus_maximus
ENSCING00000014848	-	99	42.781	ENSSDUG00000007719	cmss1	67	42.857	Seriola_dumerili
ENSCING00000014848	-	99	43.316	ENSSLDG00000012300	cmss1	65	42.857	Seriola_lalandi_dorsalis
ENSCING00000014848	-	100	32.086	ENSSARG00000003584	CMSS1	70	31.500	Sorex_araneus
ENSCING00000014848	-	99	43.316	ENSSPUG00000003865	CMSS1	82	43.316	Sphenodon_punctatus
ENSCING00000014848	-	96	43.333	ENSSPAG00000019182	cmss1	60	41.837	Stegastes_partitus
ENSCING00000014848	-	100	40.642	ENSSSCG00000011970	CMSS1	70	39.500	Sus_scrofa
ENSCING00000014848	-	99	41.176	ENSTGUG00000013635	CMSS1	82	41.053	Taeniopygia_guttata
ENSCING00000014848	-	99	43.850	ENSTRUG00000015265	cmss1	68	43.878	Takifugu_rubripes
ENSCING00000014848	-	99	35.829	ENSTNIG00000002880	cmss1	72	35.644	Tetraodon_nigroviridis
ENSCING00000014848	-	99	40.860	ENSTTRG00000001562	CMSS1	68	39.487	Tursiops_truncatus
ENSCING00000014848	-	100	40.642	ENSUAMG00000024209	CMSS1	87	39.500	Ursus_americanus
ENSCING00000014848	-	100	41.176	ENSUMAG00000001983	CMSS1	76	40.704	Ursus_maritimus
ENSCING00000014848	-	87	44.444	ENSVPAG00000000263	CMSS1	57	44.444	Vicugna_pacos
ENSCING00000014848	-	100	40.642	ENSVVUG00000021647	-	80	40.201	Vulpes_vulpes
ENSCING00000014848	-	99	41.176	ENSVVUG00000007776	-	78	40.201	Vulpes_vulpes
ENSCING00000014848	-	96	45.000	ENSXETG00000011858	cmss1	70	42.640	Xenopus_tropicalis
ENSCING00000014848	-	99	45.455	ENSXCOG00000018724	cmss1	66	44.898	Xiphophorus_couchianus
ENSCING00000014848	-	99	45.455	ENSXMAG00000011243	cmss1	72	44.388	Xiphophorus_maculatus