EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000016218 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1948 bases
Position: chrHT000070.1:220472-222419
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000028219	ResIII	PF04851.15	2.9e-10	1	1
ENSCINP00000028219	DEAD	PF00270.29	9.5e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000028465	-	1425	-	ENSCINP00000028219	475 (aa)	-	F6ZRR5

Gene Model

Click here to download ENSCING00000016218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000016218's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000016218	-	100	50.522	ENSG00000278053	DDX52	86	51.515	Homo_sapiens
ENSCING00000016218	-	98	51.496	ENSAPOG00000008759	ddx52	64	51.496	Acanthochromis_polyacanthus
ENSCING00000016218	-	100	50.522	ENSAMEG00000013159	DDX52	77	50.522	Ailuropoda_melanoleuca
ENSCING00000016218	-	90	52.326	ENSACIG00000002843	ddx52	74	52.326	Amphilophus_citrinellus
ENSCING00000016218	-	99	50.737	ENSAOCG00000000356	-	65	50.737	Amphiprion_ocellaris
ENSCING00000016218	-	99	50.737	ENSAOCG00000007983	ddx52	71	50.333	Amphiprion_ocellaris
ENSCING00000016218	-	99	50.737	ENSAPEG00000023456	ddx52	65	50.737	Amphiprion_percula
ENSCING00000016218	-	96	51.868	ENSATEG00000021525	ddx52	64	51.868	Anabas_testudineus
ENSCING00000016218	-	99	51.782	ENSACAG00000006395	DDX52	88	51.782	Anolis_carolinensis
ENSCING00000016218	-	100	51.357	ENSANAG00000028587	DDX52	77	51.357	Aotus_nancymaae
ENSCING00000016218	-	96	50.769	ENSACLG00000021447	ddx52	69	50.769	Astatotilapia_calliptera
ENSCING00000016218	-	94	52.242	ENSAMXG00000024377	ddx52	70	51.868	Astyanax_mexicanus
ENSCING00000016218	-	99	50.844	ENSBTAG00000010313	DDX52	77	50.844	Bos_taurus
ENSCING00000016218	-	93	41.447	WBGene00011032	R05D11.4	75	40.812	Caenorhabditis_elegans
ENSCING00000016218	-	100	50.939	ENSCJAG00000015190	DDX52	77	50.939	Callithrix_jacchus
ENSCING00000016218	-	100	50.313	ENSCAFG00000013554	-	77	50.313	Canis_familiaris
ENSCING00000016218	-	100	50.522	ENSCAFG00000018145	-	77	50.522	Canis_familiaris
ENSCING00000016218	-	96	51.535	ENSCAFG00020003753	DDX52	74	51.535	Canis_lupus_dingo
ENSCING00000016218	-	99	51.055	ENSCHIG00000006275	DDX52	76	51.641	Capra_hircus
ENSCING00000016218	-	100	50.522	ENSTSYG00000002996	DDX52	77	50.522	Carlito_syrichta
ENSCING00000016218	-	99	39.066	ENSCAPG00000010436	DDX52	83	39.066	Cavia_aperea
ENSCING00000016218	-	99	50.106	ENSCPOG00000001232	DDX52	76	50.106	Cavia_porcellus
ENSCING00000016218	-	100	51.775	ENSCCAG00000023213	DDX52	77	51.775	Cebus_capucinus
ENSCING00000016218	-	100	50.731	ENSCATG00000041437	DDX52	77	50.731	Cercocebus_atys
ENSCING00000016218	-	100	49.370	ENSCLAG00000016292	DDX52	77	49.370	Chinchilla_lanigera
ENSCING00000016218	-	100	50.731	ENSCSAG00000006122	DDX52	77	50.731	Chlorocebus_sabaeus
ENSCING00000016218	-	96	51.860	ENSCPBG00000009806	DDX52	72	51.477	Chrysemys_picta_bellii
ENSCING00000016218	-	85	70.545	ENSCSAVG00000003835	-	100	69.451	Ciona_savignyi
ENSCING00000016218	-	100	51.148	ENSCANG00000035140	DDX52	77	51.148	Colobus_angolensis_palliatus
ENSCING00000016218	-	100	50.524	ENSCGRG00001020695	Ddx52	77	50.524	Cricetulus_griseus_chok1gshd
ENSCING00000016218	-	100	50.314	ENSCGRG00000008830	Ddx52	77	50.314	Cricetulus_griseus_crigri
ENSCING00000016218	-	97	51.188	ENSCSEG00000010008	ddx52	65	51.316	Cynoglossus_semilaevis
ENSCING00000016218	-	95	51.778	ENSCVAG00000005302	ddx52	74	51.316	Cyprinodon_variegatus
ENSCING00000016218	-	95	50.885	ENSDARG00000100505	ddx52	75	49.790	Danio_rerio
ENSCING00000016218	-	97	51.078	ENSDNOG00000047454	DDX52	74	51.078	Dasypus_novemcinctus
ENSCING00000016218	-	100	50.943	ENSDORG00000004276	Ddx52	77	50.943	Dipodomys_ordii
ENSCING00000016218	-	93	48.090	FBgn0036754	CG5589	72	48.090	Drosophila_melanogaster
ENSCING00000016218	-	96	47.137	ENSETEG00000016042	DDX52	78	46.122	Echinops_telfairi
ENSCING00000016218	-	85	37.192	ENSEBUG00000010838	-	92	37.838	Eptatretus_burgeri
ENSCING00000016218	-	99	50.106	ENSEASG00005011275	DDX52	70	50.106	Equus_asinus_asinus
ENSCING00000016218	-	100	50.104	ENSECAG00000012286	DDX52	77	50.104	Equus_caballus
ENSCING00000016218	-	90	53.953	ENSELUG00000018002	ddx52	73	53.953	Esox_lucius
ENSCING00000016218	-	100	50.313	ENSFCAG00000010573	DDX52	77	50.313	Felis_catus
ENSCING00000016218	-	97	52.381	ENSFALG00000005155	DDX52	76	51.782	Ficedula_albicollis
ENSCING00000016218	-	100	51.139	ENSFDAG00000008340	-	78	51.139	Fukomys_damarensis
ENSCING00000016218	-	100	46.377	ENSFDAG00000011133	-	77	46.377	Fukomys_damarensis
ENSCING00000016218	-	98	51.068	ENSFHEG00000017239	ddx52	68	51.068	Fundulus_heteroclitus
ENSCING00000016218	-	96	51.416	ENSGMOG00000014879	ddx52	79	51.416	Gadus_morhua
ENSCING00000016218	-	97	51.844	ENSGALG00000005489	DDX52	76	50.731	Gallus_gallus
ENSCING00000016218	-	100	50.314	ENSGAFG00000000702	ddx52	72	50.314	Gambusia_affinis
ENSCING00000016218	-	98	48.387	ENSGACG00000020624	ddx52	92	49.011	Gasterosteus_aculeatus
ENSCING00000016218	-	99	50.638	ENSGAGG00000007234	DDX52	71	50.638	Gopherus_agassizii
ENSCING00000016218	-	100	50.731	ENSGGOG00000028224	DDX52	77	50.731	Gorilla_gorilla
ENSCING00000016218	-	100	49.580	ENSHBUG00000015638	ddx52	64	50.769	Haplochromis_burtoni
ENSCING00000016218	-	89	42.180	ENSHGLG00000019205	-	73	42.180	Heterocephalus_glaber_female
ENSCING00000016218	-	96	51.310	ENSHGLG00000006235	-	74	51.310	Heterocephalus_glaber_female
ENSCING00000016218	-	89	42.180	ENSHGLG00100018699	-	74	42.180	Heterocephalus_glaber_male
ENSCING00000016218	-	96	52.423	ENSHGLG00100013765	-	82	52.423	Heterocephalus_glaber_male
ENSCING00000016218	-	99	50.947	ENSHCOG00000007966	ddx52	83	50.947	Hippocampus_comes
ENSCING00000016218	-	95	51.885	ENSIPUG00000008623	ddx52	71	51.885	Ictalurus_punctatus
ENSCING00000016218	-	60	48.592	ENSSTOG00000002550	DDX52	83	48.592	Ictidomys_tridecemlineatus
ENSCING00000016218	-	99	50.740	ENSJJAG00000021877	Ddx52	76	50.740	Jaculus_jaculus
ENSCING00000016218	-	98	51.496	ENSKMAG00000022270	ddx52	98	52.278	Kryptolebias_marmoratus
ENSCING00000016218	-	96	51.974	ENSLBEG00000015403	ddx52	65	51.974	Labrus_bergylta
ENSCING00000016218	-	94	51.562	ENSLACG00000012514	DDX52	72	51.188	Latimeria_chalumnae
ENSCING00000016218	-	69	54.945	ENSLOCG00000005928	ddx52	70	52.083	Lepisosteus_oculatus
ENSCING00000016218	-	87	51.691	ENSLAFG00000002635	DDX52	100	51.843	Loxodonta_africana
ENSCING00000016218	-	100	50.731	ENSMFAG00000000640	DDX52	77	50.731	Macaca_fascicularis
ENSCING00000016218	-	100	50.731	ENSMMUG00000002980	DDX52	77	50.731	Macaca_mulatta
ENSCING00000016218	-	100	50.522	ENSMNEG00000043658	DDX52	77	50.522	Macaca_nemestrina
ENSCING00000016218	-	100	50.731	ENSMLEG00000017518	DDX52	77	50.731	Mandrillus_leucophaeus
ENSCING00000016218	-	96	51.974	ENSMAMG00000019719	ddx52	65	51.974	Mastacembelus_armatus
ENSCING00000016218	-	96	50.769	ENSMZEG00005019044	ddx52	64	50.769	Maylandia_zebra
ENSCING00000016218	-	97	51.410	ENSMGAG00000008091	DDX52	80	50.737	Meleagris_gallopavo
ENSCING00000016218	-	100	50.105	ENSMAUG00000021084	Ddx52	78	50.105	Mesocricetus_auratus
ENSCING00000016218	-	96	45.614	ENSMICG00000004290	-	74	45.614	Microcebus_murinus
ENSCING00000016218	-	100	50.105	ENSMOCG00000009654	Ddx52	77	50.105	Microtus_ochrogaster
ENSCING00000016218	-	99	50.106	ENSMMOG00000018825	ddx52	74	50.106	Mola_mola
ENSCING00000016218	-	97	51.844	ENSMODG00000002493	DDX52	73	51.844	Monodelphis_domestica
ENSCING00000016218	-	95	52.212	ENSMALG00000007621	ddx52	75	51.627	Monopterus_albus
ENSCING00000016218	-	100	50.734	MGP_CAROLIEiJ_G0016888	Ddx52	77	50.734	Mus_caroli
ENSCING00000016218	-	100	50.524	ENSMUSG00000020677	Ddx52	77	50.524	Mus_musculus
ENSCING00000016218	-	100	50.734	MGP_PahariEiJ_G0018018	Ddx52	77	50.734	Mus_pahari
ENSCING00000016218	-	100	50.734	MGP_SPRETEiJ_G0017733	Ddx52	77	50.734	Mus_spretus
ENSCING00000016218	-	100	50.522	ENSMPUG00000015007	DDX52	77	50.522	Mustela_putorius_furo
ENSCING00000016218	-	100	51.148	ENSMLUG00000007167	-	77	51.775	Myotis_lucifugus
ENSCING00000016218	-	97	52.061	ENSMLUG00000024480	-	90	52.061	Myotis_lucifugus
ENSCING00000016218	-	100	50.734	ENSNGAG00000020686	Ddx52	77	50.734	Nannospalax_galili
ENSCING00000016218	-	96	50.549	ENSNBRG00000007750	ddx52	81	49.684	Neolamprologus_brichardi
ENSCING00000016218	-	100	50.731	ENSNLEG00000002826	DDX52	77	50.731	Nomascus_leucogenys
ENSCING00000016218	-	82	52.941	ENSMEUG00000011234	DDX52	94	52.941	Notamacropus_eugenii
ENSCING00000016218	-	97	43.534	ENSOPRG00000003899	DDX52	75	44.828	Ochotona_princeps
ENSCING00000016218	-	97	50.976	ENSODEG00000012814	-	76	50.976	Octodon_degus
ENSCING00000016218	-	99	49.257	ENSODEG00000002857	-	83	49.257	Octodon_degus
ENSCING00000016218	-	96	50.769	ENSONIG00000004869	ddx52	70	50.769	Oreochromis_niloticus
ENSCING00000016218	-	97	50.972	ENSOANG00000007133	DDX52	74	50.972	Ornithorhynchus_anatinus
ENSCING00000016218	-	99	50.106	ENSOCUG00000014532	DDX52	76	50.106	Oryctolagus_cuniculus
ENSCING00000016218	-	95	50.667	ENSORLG00000005241	ddx52	70	50.108	Oryzias_latipes
ENSCING00000016218	-	95	50.444	ENSORLG00015015546	ddx52	66	50.108	Oryzias_latipes_hsok
ENSCING00000016218	-	98	49.785	ENSOMEG00000017602	ddx52	68	49.785	Oryzias_melastigma
ENSCING00000016218	-	98	49.571	ENSOGAG00000000868	DDX52	76	49.571	Otolemur_garnettii
ENSCING00000016218	-	99	51.055	ENSOARG00000002998	DDX52	76	51.055	Ovis_aries
ENSCING00000016218	-	100	50.731	ENSPPAG00000028453	DDX52	78	50.731	Pan_paniscus
ENSCING00000016218	-	100	50.313	ENSPPRG00000009742	DDX52	79	50.313	Panthera_pardus
ENSCING00000016218	-	100	50.104	ENSPTIG00000013697	DDX52	79	50.104	Panthera_tigris_altaica
ENSCING00000016218	-	100	50.731	ENSPTRG00000009058	DDX52	77	50.731	Pan_troglodytes
ENSCING00000016218	-	100	50.313	ENSPANG00000022101	DDX52	77	50.313	Papio_anubis
ENSCING00000016218	-	95	51.778	ENSPKIG00000013058	ddx52	74	51.570	Paramormyrops_kingsleyae
ENSCING00000016218	-	95	51.542	ENSPSIG00000010226	DDX52	77	50.731	Pelodiscus_sinensis
ENSCING00000016218	-	95	53.097	ENSPMGG00000005458	ddx52	86	53.097	Periophthalmus_magnuspinnatus
ENSCING00000016218	-	98	50.427	ENSPEMG00000003263	Ddx52	76	50.427	Peromyscus_maniculatus_bairdii
ENSCING00000016218	-	100	50.313	ENSPCIG00000017730	DDX52	66	51.422	Phascolarctos_cinereus
ENSCING00000016218	-	95	51.556	ENSPFOG00000018378	ddx52	70	50.314	Poecilia_formosa
ENSCING00000016218	-	95	51.556	ENSPLAG00000008368	ddx52	70	50.314	Poecilia_latipinna
ENSCING00000016218	-	95	51.556	ENSPMEG00000002359	ddx52	70	50.314	Poecilia_mexicana
ENSCING00000016218	-	95	51.556	ENSPREG00000016874	ddx52	70	50.314	Poecilia_reticulata
ENSCING00000016218	-	100	50.731	ENSPPYG00000008221	DDX52	77	50.731	Pongo_abelii
ENSCING00000016218	-	89	49.412	ENSPCAG00000005814	DDX52	68	49.412	Procavia_capensis
ENSCING00000016218	-	100	51.566	ENSPVAG00000010462	DDX52	77	51.566	Pteropus_vampyrus
ENSCING00000016218	-	96	50.989	ENSPNYG00000020730	ddx52	78	50.989	Pundamilia_nyererei
ENSCING00000016218	-	95	52.434	ENSPNAG00000014707	ddx52	72	51.386	Pygocentrus_nattereri
ENSCING00000016218	-	100	50.524	ENSRNOG00000002612	Ddx52	77	50.524	Rattus_norvegicus
ENSCING00000016218	-	95	51.989	ENSRBIG00000032462	DDX52	75	51.989	Rhinopithecus_bieti
ENSCING00000016218	-	95	51.989	ENSRROG00000034760	DDX52	75	51.989	Rhinopithecus_roxellana
ENSCING00000016218	-	97	41.775	YGL171W	-	79	41.775	Saccharomyces_cerevisiae
ENSCING00000016218	-	100	50.939	ENSSBOG00000035787	DDX52	77	50.939	Saimiri_boliviensis_boliviensis
ENSCING00000016218	-	97	51.410	ENSSHAG00000013962	DDX52	70	52.222	Sarcophilus_harrisii
ENSCING00000016218	-	98	52.778	ENSSFOG00015005055	ddx52	79	52.700	Scleropages_formosus
ENSCING00000016218	-	95	51.778	ENSSMAG00000009788	ddx52	67	50.531	Scophthalmus_maximus
ENSCING00000016218	-	95	51.778	ENSSDUG00000004022	ddx52	67	51.198	Seriola_dumerili
ENSCING00000016218	-	95	52.000	ENSSLDG00000016999	ddx52	77	51.198	Seriola_lalandi_dorsalis
ENSCING00000016218	-	68	62.590	ENSSARG00000000371	-	52	62.590	Sorex_araneus
ENSCING00000016218	-	94	51.007	ENSSPUG00000000720	DDX52	72	49.372	Sphenodon_punctatus
ENSCING00000016218	-	95	51.111	ENSSPAG00000014211	ddx52	63	50.429	Stegastes_partitus
ENSCING00000016218	-	99	49.894	ENSSSCG00000021275	DDX52	76	49.894	Sus_scrofa
ENSCING00000016218	-	97	51.739	ENSTGUG00000008303	-	76	51.739	Taeniopygia_guttata
ENSCING00000016218	-	99	51.277	ENSTRUG00000017071	ddx52	65	51.277	Takifugu_rubripes
ENSCING00000016218	-	98	51.496	ENSTNIG00000009990	ddx52	77	51.261	Tetraodon_nigroviridis
ENSCING00000016218	-	99	50.531	ENSTTRG00000008917	DDX52	76	50.531	Tursiops_truncatus
ENSCING00000016218	-	99	50.743	ENSVPAG00000001979	DDX52	76	50.743	Vicugna_pacos
ENSCING00000016218	-	100	50.104	ENSVVUG00000020209	DDX52	86	50.976	Vulpes_vulpes
ENSCING00000016218	-	96	51.747	ENSXETG00000025903	ddx52	75	51.747	Xenopus_tropicalis
ENSCING00000016218	-	95	51.556	ENSXMAG00000010805	ddx52	68	51.068	Xiphophorus_maculatus