EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000018894 (Gene tree)
Gene ID: 100181775
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha%2C somatic form
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 3555 bases
Position: chrHT000059.1:115137-118691
Accession: 100181775
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000034892	GTP_EFTU	PF00009.27	4e-54	1	1
ENSCINP00000034892	GTP_EFTU_D2	PF03144.25	7.4e-15	1	1
ENSCINP00000034892	GTP_EFTU_D3	PF03143.17	2.1e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036833	-	1880	XM_002126779	ENSCINP00000034892	467 (aa)	XP_002126815	H2XZ08

Gene Model

Click here to download ENSCING00000018894's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000018894's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000018894	-	97	78.414	ENSAPOG00000004714	-	98	78.414	Acanthochromis_polyacanthus
ENSCING00000018894	-	89	80.048	ENSACIG00000001219	-	97	80.296	Amphilophus_citrinellus
ENSCING00000018894	-	87	79.064	ENSAOCG00000022002	-	98	79.064	Amphiprion_ocellaris
ENSCING00000018894	-	99	79.957	ENSAOCG00000022039	-	98	79.956	Amphiprion_ocellaris
ENSCING00000018894	-	99	79.741	ENSAPEG00000016361	-	98	79.736	Amphiprion_percula
ENSCING00000018894	-	97	81.498	ENSATEG00000003244	-	95	81.498	Anabas_testudineus
ENSCING00000018894	-	99	81.250	ENSACLG00000022560	-	98	81.498	Astatotilapia_calliptera
ENSCING00000018894	-	99	79.095	WBGene00001169	eef-1A.2	98	79.075	Caenorhabditis_elegans
ENSCING00000018894	-	99	79.095	WBGene00001168	eef-1A.1	98	79.075	Caenorhabditis_elegans
ENSCING00000018894	-	97	83.114	ENSCING00000005126	-	98	83.114	Ciona_intestinalis
ENSCING00000018894	-	99	79.443	ENSCING00000007703	-	97	79.431	Ciona_intestinalis
ENSCING00000018894	-	99	82.900	ENSCING00000021478	-	98	83.444	Ciona_intestinalis
ENSCING00000018894	-	98	77.462	ENSCSAVG00000001085	-	90	77.434	Ciona_savignyi
ENSCING00000018894	-	97	81.678	ENSCSAVG00000009663	-	97	81.236	Ciona_savignyi
ENSCING00000018894	-	99	83.478	ENSCSAVG00000006357	-	96	92.000	Ciona_savignyi
ENSCING00000018894	-	96	79.341	ENSCSAVG00000003196	-	97	79.341	Ciona_savignyi
ENSCING00000018894	-	97	80.176	ENSCSEG00000008011	-	98	80.176	Cynoglossus_semilaevis
ENSCING00000018894	-	89	79.759	ENSCSEG00000007992	-	97	79.557	Cynoglossus_semilaevis
ENSCING00000018894	-	89	79.567	ENSCSEG00000007972	-	98	79.557	Cynoglossus_semilaevis
ENSCING00000018894	-	97	80.617	ENSCVAG00000019356	-	98	80.617	Cyprinodon_variegatus
ENSCING00000018894	-	99	78.879	FBgn0284245	eEF1alpha1	98	79.075	Drosophila_melanogaster
ENSCING00000018894	-	97	78.634	FBgn0000557	eEF1alpha2	98	78.634	Drosophila_melanogaster
ENSCING00000018894	-	99	77.970	ENSEBUG00000015814	-	97	78.747	Eptatretus_burgeri
ENSCING00000018894	-	99	81.034	ENSFHEG00000015054	-	98	81.057	Fundulus_heteroclitus
ENSCING00000018894	-	97	80.617	ENSGAFG00000014646	-	98	80.617	Gambusia_affinis
ENSCING00000018894	-	99	81.034	ENSGACG00000002143	-	98	81.278	Gasterosteus_aculeatus
ENSCING00000018894	-	97	81.498	ENSGACG00000002182	-	98	81.498	Gasterosteus_aculeatus
ENSCING00000018894	-	55	78.039	ENSHBUG00000017166	-	91	78.367	Haplochromis_burtoni
ENSCING00000018894	-	97	81.057	ENSHCOG00000008468	-	98	81.057	Hippocampus_comes
ENSCING00000018894	-	99	80.994	ENSHCOG00000008489	-	98	80.837	Hippocampus_comes
ENSCING00000018894	-	97	79.956	ENSLBEG00000002759	-	98	79.956	Labrus_bergylta
ENSCING00000018894	-	99	80.130	ENSLBEG00000002955	-	98	80.176	Labrus_bergylta
ENSCING00000018894	-	97	81.498	ENSMAMG00000007715	-	98	81.498	Mastacembelus_armatus
ENSCING00000018894	-	99	73.491	ENSMMOG00000018160	-	93	84.783	Mola_mola
ENSCING00000018894	-	97	80.617	ENSMMOG00000001165	-	94	89.773	Mola_mola
ENSCING00000018894	-	99	78.834	ENSMMOG00000001106	-	98	78.855	Mola_mola
ENSCING00000018894	-	99	70.753	ENSNBRG00000017346	-	97	70.769	Neolamprologus_brichardi
ENSCING00000018894	-	76	77.684	ENSONIG00000017760	-	98	77.684	Oreochromis_niloticus
ENSCING00000018894	-	97	80.617	ENSORLG00000007614	eef1a	98	80.617	Oryzias_latipes
ENSCING00000018894	-	99	81.681	ENSORLG00015002397	-	98	81.718	Oryzias_latipes_hsok
ENSCING00000018894	-	97	80.837	ENSOMEG00000018226	-	98	80.837	Oryzias_melastigma
ENSCING00000018894	-	97	80.837	ENSPMGG00000023911	-	94	91.954	Periophthalmus_magnuspinnatus
ENSCING00000018894	-	93	50.575	ENSPMGG00000022427	-	96	61.250	Periophthalmus_magnuspinnatus
ENSCING00000018894	-	97	80.617	ENSPFOG00000003924	-	97	80.617	Poecilia_formosa
ENSCING00000018894	-	97	80.617	ENSPLAG00000004316	-	98	80.617	Poecilia_latipinna
ENSCING00000018894	-	97	80.617	ENSPMEG00000001010	-	98	80.617	Poecilia_mexicana
ENSCING00000018894	-	99	81.466	ENSPREG00000008243	-	98	81.498	Poecilia_reticulata
ENSCING00000018894	-	99	81.250	ENSPNYG00000007263	-	98	81.498	Pundamilia_nyererei
ENSCING00000018894	-	96	77.605	YPR080W	TEF1	98	77.293	Saccharomyces_cerevisiae
ENSCING00000018894	-	96	77.605	YBR118W	TEF2	98	77.293	Saccharomyces_cerevisiae
ENSCING00000018894	-	53	76.113	ENSSMAG00000016277	-	94	79.330	Scophthalmus_maximus
ENSCING00000018894	-	97	71.849	ENSSMAG00000018469	-	98	71.849	Scophthalmus_maximus
ENSCING00000018894	-	97	79.736	ENSSDUG00000008198	-	98	79.736	Seriola_dumerili
ENSCING00000018894	-	97	79.075	ENSSPAG00000001710	-	98	79.075	Stegastes_partitus
ENSCING00000018894	-	99	80.994	ENSTRUG00000005066	-	98	81.057	Takifugu_rubripes
ENSCING00000018894	-	97	81.278	ENSTRUG00000005727	ef-1a	98	81.278	Takifugu_rubripes
ENSCING00000018894	-	97	81.057	ENSTNIG00000002619	-	98	81.057	Tetraodon_nigroviridis
ENSCING00000018894	-	96	80.313	ENSTNIG00000002617	-	93	80.313	Tetraodon_nigroviridis
ENSCING00000018894	-	97	80.617	ENSXCOG00000001542	-	94	91.954	Xiphophorus_couchianus