EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000018970 (Gene tree)
Gene ID: 100180256
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 6955 bases
Position: chr4:2604658-2611612
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000003815	Met_10	PF02475.16	2.5e-59	1	1
ENSCINP00000024851	Met_10	PF02475.16	3.1e-59	1	1
ENSCINP00000033810	Met_10	PF02475.16	6.3e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000025097	-	2086	-	ENSCINP00000024851	466 (aa)	-	I6L7H7
ENSCINT00000003815	-	1287	-	ENSCINP00000003815	429 (aa)	-	I6L728
ENSCINT00000035041	-	801	-	ENSCINP00000033810	267 (aa)	-	H2XVX6

Gene Model

Click here to download ENSCING00000018970's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000018970's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000018970	-	99	43.311	ENSG00000126814	TRMT5	82	43.311	Homo_sapiens
ENSCING00000018970	-	94	45.833	ENSAPOG00000015490	trmt5	97	44.907	Acanthochromis_polyacanthus
ENSCING00000018970	-	95	46.667	ENSAMEG00000002979	TRMT5	79	45.433	Ailuropoda_melanoleuca
ENSCING00000018970	-	95	45.169	ENSACIG00000024216	trmt5	97	44.988	Amphilophus_citrinellus
ENSCING00000018970	-	96	45.823	ENSAOCG00000007757	trmt5	97	45.244	Amphiprion_ocellaris
ENSCING00000018970	-	96	46.283	ENSAPEG00000022718	trmt5	97	45.688	Amphiprion_percula
ENSCING00000018970	-	94	45.455	ENSATEG00000015576	trmt5	87	44.342	Anabas_testudineus
ENSCING00000018970	-	98	44.548	ENSAPLG00000008002	TRMT5	85	44.548	Anas_platyrhynchos
ENSCING00000018970	-	95	43.750	ENSACAG00000006533	TRMT5	83	41.190	Anolis_carolinensis
ENSCING00000018970	-	99	43.864	ENSANAG00000024875	TRMT5	76	43.864	Aotus_nancymaae
ENSCING00000018970	-	94	45.833	ENSACLG00000020216	trmt5	90	41.558	Astatotilapia_calliptera
ENSCING00000018970	-	97	44.444	ENSAMXG00000021299	trmt5	89	44.977	Astyanax_mexicanus
ENSCING00000018970	-	98	46.970	ENSBTAG00000011796	TRMT5	82	45.346	Bos_taurus
ENSCING00000018970	-	96	33.460	WBGene00194707	C53A5.17	99	31.622	Caenorhabditis_elegans
ENSCING00000018970	-	99	43.280	ENSCJAG00000019157	TRMT5	82	43.280	Callithrix_jacchus
ENSCING00000018970	-	99	43.508	ENSCAFG00000015647	TRMT5	85	43.508	Canis_familiaris
ENSCING00000018970	-	99	43.508	ENSCAFG00020008016	TRMT5	85	43.508	Canis_lupus_dingo
ENSCING00000018970	-	97	47.148	ENSCHIG00000018801	TRMT5	84	43.964	Capra_hircus
ENSCING00000018970	-	95	46.275	ENSTSYG00000001043	TRMT5	82	42.824	Carlito_syrichta
ENSCING00000018970	-	95	38.425	ENSCAPG00000014642	TRMT5	80	38.084	Cavia_aperea
ENSCING00000018970	-	95	47.656	ENSCPOG00000014396	TRMT5	80	45.585	Cavia_porcellus
ENSCING00000018970	-	99	43.311	ENSCCAG00000037835	TRMT5	82	43.311	Cebus_capucinus
ENSCING00000018970	-	99	43.379	ENSCATG00000045352	TRMT5	82	43.379	Cercocebus_atys
ENSCING00000018970	-	95	47.266	ENSCLAG00000013155	TRMT5	84	44.869	Chinchilla_lanigera
ENSCING00000018970	-	99	43.607	ENSCSAG00000014159	TRMT5	75	43.607	Chlorocebus_sabaeus
ENSCING00000018970	-	79	46.875	ENSCHOG00000008128	-	87	46.875	Choloepus_hoffmanni
ENSCING00000018970	-	96	44.788	ENSCPBG00000022359	TRMT5	89	40.127	Chrysemys_picta_bellii
ENSCING00000018970	-	96	77.344	ENSCSAVG00000000418	-	98	67.912	Ciona_savignyi
ENSCING00000018970	-	99	43.607	ENSCANG00000032648	TRMT5	82	43.607	Colobus_angolensis_palliatus
ENSCING00000018970	-	95	45.098	ENSCGRG00001018337	TRMT5	89	43.510	Cricetulus_griseus_chok1gshd
ENSCING00000018970	-	95	45.098	ENSCGRG00000010454	Trmt5	87	41.228	Cricetulus_griseus_crigri
ENSCING00000018970	-	94	45.669	ENSCSEG00000001533	trmt5	89	43.548	Cynoglossus_semilaevis
ENSCING00000018970	-	94	46.324	ENSCVAG00000007630	trmt5	97	45.370	Cyprinodon_variegatus
ENSCING00000018970	-	99	43.841	ENSDARG00000069278	trmt5	98	43.841	Danio_rerio
ENSCING00000018970	-	95	47.451	ENSDNOG00000019211	TRMT5	78	44.794	Dasypus_novemcinctus
ENSCING00000018970	-	97	45.594	ENSDORG00000015555	Trmt5	85	43.249	Dipodomys_ordii
ENSCING00000018970	-	96	42.588	FBgn0052281	CG32281	89	43.026	Drosophila_melanogaster
ENSCING00000018970	-	95	45.098	ENSETEG00000017163	TRMT5	64	46.246	Echinops_telfairi
ENSCING00000018970	-	76	41.892	ENSEBUG00000002145	trmt5	61	41.344	Eptatretus_burgeri
ENSCING00000018970	-	95	47.059	ENSEASG00005016123	TRMT5	80	44.630	Equus_asinus_asinus
ENSCING00000018970	-	95	47.059	ENSECAG00000000057	TRMT5	80	44.869	Equus_caballus
ENSCING00000018970	-	97	45.594	ENSELUG00000011314	trmt5	86	44.977	Esox_lucius
ENSCING00000018970	-	99	44.647	ENSFCAG00000006820	TRMT5	81	44.647	Felis_catus
ENSCING00000018970	-	95	46.275	ENSFALG00000003430	TRMT5	84	44.369	Ficedula_albicollis
ENSCING00000018970	-	95	46.275	ENSFDAG00000018556	TRMT5	80	44.365	Fukomys_damarensis
ENSCING00000018970	-	99	43.644	ENSFHEG00000008062	trmt5	94	43.644	Fundulus_heteroclitus
ENSCING00000018970	-	94	44.988	ENSGMOG00000010858	trmt5	98	43.981	Gadus_morhua
ENSCING00000018970	-	96	45.736	ENSGALG00000011904	TRMT5	91	43.284	Gallus_gallus
ENSCING00000018970	-	96	45.585	ENSGAFG00000004103	trmt5	88	45.266	Gambusia_affinis
ENSCING00000018970	-	93	46.287	ENSGACG00000008470	trmt5	92	53.704	Gasterosteus_aculeatus
ENSCING00000018970	-	97	43.529	ENSGAGG00000023507	TRMT5	90	41.880	Gopherus_agassizii
ENSCING00000018970	-	97	45.627	ENSGGOG00000006831	TRMT5	83	43.537	Gorilla_gorilla
ENSCING00000018970	-	96	45.585	ENSHBUG00000023000	trmt5	89	44.907	Haplochromis_burtoni
ENSCING00000018970	-	97	45.594	ENSHGLG00000013713	TRMT5	90	43.885	Heterocephalus_glaber_female
ENSCING00000018970	-	97	45.946	ENSHGLG00100002392	TRMT5	79	42.892	Heterocephalus_glaber_male
ENSCING00000018970	-	94	45.874	ENSHCOG00000012203	trmt5	97	45.874	Hippocampus_comes
ENSCING00000018970	-	96	47.876	ENSIPUG00000002612	trmt5	95	43.841	Ictalurus_punctatus
ENSCING00000018970	-	99	43.084	ENSSTOG00000011865	TRMT5	91	40.773	Ictidomys_tridecemlineatus
ENSCING00000018970	-	95	45.882	ENSJJAG00000009935	Trmt5	94	44.365	Jaculus_jaculus
ENSCING00000018970	-	96	45.215	ENSKMAG00000005992	trmt5	98	44.444	Kryptolebias_marmoratus
ENSCING00000018970	-	97	45.769	ENSLBEG00000023240	trmt5	99	44.749	Labrus_bergylta
ENSCING00000018970	-	94	43.701	ENSLACG00000018464	TRMT5	95	43.119	Latimeria_chalumnae
ENSCING00000018970	-	97	45.211	ENSLOCG00000010120	trmt5	98	44.595	Lepisosteus_oculatus
ENSCING00000018970	-	99	43.379	ENSLAFG00000003616	TRMT5	82	43.379	Loxodonta_africana
ENSCING00000018970	-	99	43.379	ENSMFAG00000002940	TRMT5	82	43.379	Macaca_fascicularis
ENSCING00000018970	-	99	40.183	ENSMMUG00000013611	TRMT5	82	40.183	Macaca_mulatta
ENSCING00000018970	-	99	43.379	ENSMNEG00000000131	TRMT5	82	43.379	Macaca_nemestrina
ENSCING00000018970	-	99	43.379	ENSMLEG00000043649	TRMT5	82	43.379	Mandrillus_leucophaeus
ENSCING00000018970	-	96	45.585	ENSMAMG00000001758	trmt5	87	44.676	Mastacembelus_armatus
ENSCING00000018970	-	96	45.107	ENSMZEG00005007457	trmt5	89	44.444	Maylandia_zebra
ENSCING00000018970	-	97	45.211	ENSMGAG00000013565	TRMT5	91	43.129	Meleagris_gallopavo
ENSCING00000018970	-	95	45.490	ENSMAUG00000016091	Trmt5	80	44.175	Mesocricetus_auratus
ENSCING00000018970	-	95	47.451	ENSMICG00000044351	TRMT5	80	45.324	Microcebus_murinus
ENSCING00000018970	-	95	45.098	ENSMOCG00000020904	Trmt5	86	41.741	Microtus_ochrogaster
ENSCING00000018970	-	97	45.385	ENSMMOG00000012159	trmt5	88	45.786	Mola_mola
ENSCING00000018970	-	95	45.703	ENSMODG00000008664	TRMT5	80	45.215	Monodelphis_domestica
ENSCING00000018970	-	95	45.312	ENSMALG00000009533	trmt5	87	44.342	Monopterus_albus
ENSCING00000018970	-	95	43.137	MGP_CAROLIEiJ_G0017843	Trmt5	85	41.781	Mus_caroli
ENSCING00000018970	-	95	43.922	ENSMUSG00000034442	Trmt5	80	44.175	Mus_musculus
ENSCING00000018970	-	95	45.312	MGP_PahariEiJ_G0029601	Trmt5	92	40.795	Mus_pahari
ENSCING00000018970	-	95	43.922	MGP_SPRETEiJ_G0018690	Trmt5	80	44.175	Mus_spretus
ENSCING00000018970	-	99	43.736	ENSMPUG00000006435	TRMT5	70	43.736	Mustela_putorius_furo
ENSCING00000018970	-	95	46.667	ENSMLUG00000002357	TRMT5	80	44.630	Myotis_lucifugus
ENSCING00000018970	-	95	45.098	ENSNGAG00000012691	Trmt5	81	43.932	Nannospalax_galili
ENSCING00000018970	-	96	45.585	ENSNBRG00000009536	trmt5	97	45.370	Neolamprologus_brichardi
ENSCING00000018970	-	99	42.825	ENSNLEG00000013805	TRMT5	82	42.825	Nomascus_leucogenys
ENSCING00000018970	-	69	38.907	ENSMEUG00000004767	-	97	38.907	Notamacropus_eugenii
ENSCING00000018970	-	95	46.094	ENSOPRG00000011719	TRMT5	69	47.238	Ochotona_princeps
ENSCING00000018970	-	95	46.484	ENSODEG00000013922	TRMT5	85	44.391	Octodon_degus
ENSCING00000018970	-	94	46.324	ENSONIG00000020115	trmt5	80	45.370	Oreochromis_niloticus
ENSCING00000018970	-	95	46.667	ENSOCUG00000014281	TRMT5	79	46.117	Oryctolagus_cuniculus
ENSCING00000018970	-	97	43.678	ENSORLG00000015734	trmt5	94	43.261	Oryzias_latipes
ENSCING00000018970	-	97	43.678	ENSORLG00020009860	trmt5	90	44.292	Oryzias_latipes_hni
ENSCING00000018970	-	96	44.844	ENSORLG00015008653	trmt5	99	44.749	Oryzias_latipes_hsok
ENSCING00000018970	-	97	45.594	ENSOMEG00000006629	trmt5	90	45.309	Oryzias_melastigma
ENSCING00000018970	-	95	46.275	ENSOGAG00000016088	TRMT5	80	44.656	Otolemur_garnettii
ENSCING00000018970	-	97	47.148	ENSOARG00000021132	TRMT5	83	44.419	Ovis_aries
ENSCING00000018970	-	97	45.627	ENSPPAG00000035176	TRMT5	83	43.537	Pan_paniscus
ENSCING00000018970	-	99	44.647	ENSPPRG00000013336	TRMT5	82	44.647	Panthera_pardus
ENSCING00000018970	-	95	47.059	ENSPTIG00000006744	TRMT5	81	45.707	Panthera_tigris_altaica
ENSCING00000018970	-	97	45.627	ENSPTRG00000006415	TRMT5	83	43.537	Pan_troglodytes
ENSCING00000018970	-	99	43.151	ENSPANG00000016605	TRMT5	82	43.151	Papio_anubis
ENSCING00000018970	-	96	47.368	ENSPKIG00000018196	trmt5	92	46.226	Paramormyrops_kingsleyae
ENSCING00000018970	-	95	44.141	ENSPSIG00000014128	TRMT5	83	42.308	Pelodiscus_sinensis
ENSCING00000018970	-	99	45.035	ENSPMGG00000003882	trmt5	88	43.683	Periophthalmus_magnuspinnatus
ENSCING00000018970	-	95	45.098	ENSPEMG00000022664	Trmt5	80	44.903	Peromyscus_maniculatus_bairdii
ENSCING00000018970	-	95	46.484	ENSPCIG00000020458	TRMT5	82	44.064	Phascolarctos_cinereus
ENSCING00000018970	-	94	47.433	ENSPFOG00000008680	trmt5	97	46.420	Poecilia_formosa
ENSCING00000018970	-	94	47.433	ENSPLAG00000014197	trmt5	93	44.719	Poecilia_latipinna
ENSCING00000018970	-	99	44.068	ENSPMEG00000014848	trmt5	96	44.068	Poecilia_mexicana
ENSCING00000018970	-	94	46.959	ENSPREG00000015503	trmt5	99	45.476	Poecilia_reticulata
ENSCING00000018970	-	99	42.825	ENSPPYG00000005877	TRMT5	82	42.825	Pongo_abelii
ENSCING00000018970	-	59	48.289	ENSPCAG00000006616	-	54	48.289	Procavia_capensis
ENSCING00000018970	-	95	47.059	ENSPCOG00000017447	TRMT5	79	44.976	Propithecus_coquereli
ENSCING00000018970	-	58	48.649	ENSPVAG00000015311	TRMT5	50	48.649	Pteropus_vampyrus
ENSCING00000018970	-	96	45.585	ENSPNYG00000022005	trmt5	97	44.907	Pundamilia_nyererei
ENSCING00000018970	-	96	47.490	ENSPNAG00000022427	trmt5	89	46.364	Pygocentrus_nattereri
ENSCING00000018970	-	95	45.312	ENSRNOG00000007785	Trmt5	95	43.280	Rattus_norvegicus
ENSCING00000018970	-	99	43.379	ENSRBIG00000033903	TRMT5	82	43.379	Rhinopithecus_bieti
ENSCING00000018970	-	99	43.379	ENSRROG00000035334	TRMT5	82	43.379	Rhinopithecus_roxellana
ENSCING00000018970	-	70	37.640	YHR070W	-	71	37.640	Saccharomyces_cerevisiae
ENSCING00000018970	-	99	43.736	ENSSBOG00000027786	TRMT5	84	44.391	Saimiri_boliviensis_boliviensis
ENSCING00000018970	-	95	47.674	ENSSHAG00000003232	TRMT5	91	43.038	Sarcophilus_harrisii
ENSCING00000018970	-	96	46.154	ENSSFOG00015013093	trmt5	97	46.789	Scleropages_formosus
ENSCING00000018970	-	97	44.656	ENSSMAG00000001616	trmt5	88	44.342	Scophthalmus_maximus
ENSCING00000018970	-	94	46.098	ENSSDUG00000019541	trmt5	86	45.139	Seriola_dumerili
ENSCING00000018970	-	94	46.229	ENSSLDG00000001680	trmt5	97	45.266	Seriola_lalandi_dorsalis
ENSCING00000018970	-	99	43.379	ENSSARG00000012431	TRMT5	82	43.379	Sorex_araneus
ENSCING00000018970	-	95	43.922	ENSSPUG00000010098	TRMT5	86	42.955	Sphenodon_punctatus
ENSCING00000018970	-	94	45.966	ENSSPAG00000012940	trmt5	90	45.266	Stegastes_partitus
ENSCING00000018970	-	99	44.191	ENSSSCG00000024529	TRMT5	87	43.111	Sus_scrofa
ENSCING00000018970	-	97	46.154	ENSTGUG00000012988	TRMT5	90	44.519	Taeniopygia_guttata
ENSCING00000018970	-	97	44.231	ENSTRUG00000010888	trmt5	91	43.665	Takifugu_rubripes
ENSCING00000018970	-	97	43.846	ENSTNIG00000017342	trmt5	94	43.972	Tetraodon_nigroviridis
ENSCING00000018970	-	99	43.151	ENSTBEG00000005659	TRMT5	83	43.151	Tupaia_belangeri
ENSCING00000018970	-	95	46.667	ENSTTRG00000013839	TRMT5	80	44.391	Tursiops_truncatus
ENSCING00000018970	-	95	46.667	ENSUAMG00000023288	TRMT5	81	45.433	Ursus_americanus
ENSCING00000018970	-	95	46.275	ENSUMAG00000013736	TRMT5	92	45.232	Ursus_maritimus
ENSCING00000018970	-	99	43.508	ENSVPAG00000002392	TRMT5	82	43.508	Vicugna_pacos
ENSCING00000018970	-	99	43.280	ENSVVUG00000029464	TRMT5	85	43.280	Vulpes_vulpes
ENSCING00000018970	-	97	44.487	ENSXETG00000014455	trmt5	86	43.991	Xenopus_tropicalis
ENSCING00000018970	-	99	44.231	ENSXCOG00000008547	trmt5	91	46.963	Xiphophorus_couchianus
ENSCING00000018970	-	98	46.118	ENSXMAG00000013474	trmt5	92	47.196	Xiphophorus_maculatus