EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000019152 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm6
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 892 bases
Position: chr1:7016330-7017221
Accession: 100181225
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000032539	LSM	PF01423.22	2.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036525	-	535	-	ENSCINP00000032539	82 (aa)	XP_002120650	H2XSA5

Gene Model

Click here to download ENSCING00000019152's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000019152's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000019152	-	93	96.053	ENSG00000164167	LSM6	95	96.053	Homo_sapiens
ENSCING00000019152	-	93	94.737	ENSAPOG00000019832	lsm6	95	94.737	Acanthochromis_polyacanthus
ENSCING00000019152	-	93	96.053	ENSAMEG00000016671	LSM6	95	96.053	Ailuropoda_melanoleuca
ENSCING00000019152	-	93	94.737	ENSACIG00000016711	lsm6	95	94.737	Amphilophus_citrinellus
ENSCING00000019152	-	93	94.737	ENSAPEG00000023992	lsm6	95	94.737	Amphiprion_percula
ENSCING00000019152	-	93	94.737	ENSATEG00000012610	lsm6	95	94.737	Anabas_testudineus
ENSCING00000019152	-	93	96.053	ENSAPLG00000012594	LSM6	97	96.053	Anas_platyrhynchos
ENSCING00000019152	-	93	96.053	ENSACAG00000004004	LSM6	95	96.053	Anolis_carolinensis
ENSCING00000019152	-	93	81.579	ENSANAG00000021839	-	95	81.579	Aotus_nancymaae
ENSCING00000019152	-	93	96.053	ENSANAG00000030568	-	95	96.053	Aotus_nancymaae
ENSCING00000019152	-	93	94.737	ENSACLG00000025621	lsm6	95	94.737	Astatotilapia_calliptera
ENSCING00000019152	-	93	94.737	ENSAMXG00000038738	lsm6	95	94.737	Astyanax_mexicanus
ENSCING00000019152	-	93	96.053	ENSBTAG00000014060	LSM6	95	96.053	Bos_taurus
ENSCING00000019152	-	91	90.667	ENSBTAG00000052085	-	94	90.667	Bos_taurus
ENSCING00000019152	-	94	81.818	WBGene00003080	lsm-6	100	81.818	Caenorhabditis_elegans
ENSCING00000019152	-	93	96.053	ENSCJAG00000002482	LSM6	95	96.053	Callithrix_jacchus
ENSCING00000019152	-	93	96.053	ENSCAFG00000007738	LSM6	95	96.053	Canis_familiaris
ENSCING00000019152	-	93	96.053	ENSCAFG00020025902	LSM6	95	96.053	Canis_lupus_dingo
ENSCING00000019152	-	93	96.053	ENSCHIG00000010334	-	95	96.053	Capra_hircus
ENSCING00000019152	-	83	97.059	ENSCHIG00000012864	-	96	97.059	Capra_hircus
ENSCING00000019152	-	93	80.263	ENSCHIG00000024198	-	89	80.263	Capra_hircus
ENSCING00000019152	-	78	90.625	ENSTSYG00000012759	-	84	90.625	Carlito_syrichta
ENSCING00000019152	-	93	96.053	ENSTSYG00000026972	LSM6	95	96.053	Carlito_syrichta
ENSCING00000019152	-	76	95.161	ENSCAPG00000011179	-	95	95.161	Cavia_aperea
ENSCING00000019152	-	93	96.053	ENSCAPG00000008104	LSM6	95	96.053	Cavia_aperea
ENSCING00000019152	-	93	96.053	ENSCPOG00000032655	LSM6	95	96.053	Cavia_porcellus
ENSCING00000019152	-	93	96.053	ENSCCAG00000020665	-	95	96.053	Cebus_capucinus
ENSCING00000019152	-	93	96.053	ENSCCAG00000036437	LSM6	95	96.053	Cebus_capucinus
ENSCING00000019152	-	93	96.053	ENSCATG00000002770	-	95	96.053	Cercocebus_atys
ENSCING00000019152	-	91	72.000	ENSCATG00000038799	-	93	72.000	Cercocebus_atys
ENSCING00000019152	-	93	96.053	ENSCLAG00000005495	LSM6	95	96.053	Chinchilla_lanigera
ENSCING00000019152	-	85	78.873	ENSCLAG00000005685	-	100	78.873	Chinchilla_lanigera
ENSCING00000019152	-	93	96.053	ENSCSAG00000003421	LSM6	95	96.053	Chlorocebus_sabaeus
ENSCING00000019152	-	93	73.684	ENSCHOG00000003420	LSM6	94	73.684	Choloepus_hoffmanni
ENSCING00000019152	-	93	96.053	ENSCPBG00000027472	LSM6	80	96.053	Chrysemys_picta_bellii
ENSCING00000019152	-	100	97.561	ENSCSAVG00000002065	-	100	97.561	Ciona_savignyi
ENSCING00000019152	-	93	96.053	ENSCANG00000041263	-	95	96.053	Colobus_angolensis_palliatus
ENSCING00000019152	-	93	96.053	ENSCANG00000006849	-	95	96.053	Colobus_angolensis_palliatus
ENSCING00000019152	-	93	67.105	ENSCANG00000035214	-	94	67.105	Colobus_angolensis_palliatus
ENSCING00000019152	-	93	96.053	ENSCGRG00001017142	Lsm6	95	96.053	Cricetulus_griseus_chok1gshd
ENSCING00000019152	-	93	96.053	ENSCGRG00000008320	Lsm6	95	96.053	Cricetulus_griseus_crigri
ENSCING00000019152	-	93	94.737	ENSCSEG00000000423	lsm6	95	94.737	Cynoglossus_semilaevis
ENSCING00000019152	-	93	94.737	ENSCVAG00000001592	lsm6	95	94.737	Cyprinodon_variegatus
ENSCING00000019152	-	93	94.737	ENSDARG00000036995	lsm6	95	94.737	Danio_rerio
ENSCING00000019152	-	93	94.737	ENSDNOG00000044848	-	95	94.737	Dasypus_novemcinctus
ENSCING00000019152	-	80	98.485	ENSDNOG00000040186	-	71	98.485	Dasypus_novemcinctus
ENSCING00000019152	-	93	96.053	ENSDORG00000000933	Lsm6	95	96.053	Dipodomys_ordii
ENSCING00000019152	-	95	84.615	FBgn0034564	CG9344	99	84.615	Drosophila_melanogaster
ENSCING00000019152	-	57	95.745	ENSETEG00000013098	LSM6	98	95.745	Echinops_telfairi
ENSCING00000019152	-	93	96.053	ENSEBUG00000017073	lsm6	95	96.053	Eptatretus_burgeri
ENSCING00000019152	-	80	98.485	ENSEASG00005001533	LSM6	69	98.485	Equus_asinus_asinus
ENSCING00000019152	-	93	96.053	ENSECAG00000021036	LSM6	95	96.053	Equus_caballus
ENSCING00000019152	-	93	67.105	ENSEEUG00000002101	LSM6	96	67.105	Erinaceus_europaeus
ENSCING00000019152	-	93	94.737	ENSELUG00000014301	LSM6	95	94.737	Esox_lucius
ENSCING00000019152	-	93	96.053	ENSFCAG00000003047	LSM6	95	96.053	Felis_catus
ENSCING00000019152	-	93	96.053	ENSFALG00000005509	LSM6	87	96.053	Ficedula_albicollis
ENSCING00000019152	-	93	96.053	ENSFDAG00000020913	-	95	96.053	Fukomys_damarensis
ENSCING00000019152	-	93	84.211	ENSFDAG00000019073	-	95	84.211	Fukomys_damarensis
ENSCING00000019152	-	93	94.737	ENSFHEG00000007948	lsm6	95	94.737	Fundulus_heteroclitus
ENSCING00000019152	-	93	94.737	ENSGMOG00000015550	lsm6	95	94.737	Gadus_morhua
ENSCING00000019152	-	93	96.053	ENSGALG00000009985	LSM6	95	96.053	Gallus_gallus
ENSCING00000019152	-	93	94.737	ENSGAFG00000017763	lsm6	95	94.737	Gambusia_affinis
ENSCING00000019152	-	94	93.506	ENSGACG00000017223	lsm6	96	93.506	Gasterosteus_aculeatus
ENSCING00000019152	-	93	96.053	ENSGAGG00000020980	LSM6	95	96.053	Gopherus_agassizii
ENSCING00000019152	-	93	96.053	ENSGGOG00000001310	LSM6	95	96.053	Gorilla_gorilla
ENSCING00000019152	-	93	94.737	ENSHBUG00000008618	lsm6	95	94.737	Haplochromis_burtoni
ENSCING00000019152	-	93	96.053	ENSHGLG00000000205	LSM6	95	96.053	Heterocephalus_glaber_female
ENSCING00000019152	-	93	96.053	ENSHGLG00100014341	LSM6	95	96.053	Heterocephalus_glaber_male
ENSCING00000019152	-	93	94.737	ENSHCOG00000005591	lsm6	95	94.737	Hippocampus_comes
ENSCING00000019152	-	93	94.737	ENSIPUG00000004508	lsm6	95	94.737	Ictalurus_punctatus
ENSCING00000019152	-	93	96.053	ENSSTOG00000002678	LSM6	95	96.053	Ictidomys_tridecemlineatus
ENSCING00000019152	-	93	96.053	ENSJJAG00000013845	-	95	96.053	Jaculus_jaculus
ENSCING00000019152	-	95	74.359	ENSJJAG00000016942	-	99	74.359	Jaculus_jaculus
ENSCING00000019152	-	93	88.158	ENSJJAG00000011211	-	95	88.158	Jaculus_jaculus
ENSCING00000019152	-	93	94.737	ENSKMAG00000004105	lsm6	95	94.737	Kryptolebias_marmoratus
ENSCING00000019152	-	93	94.737	ENSLBEG00000018441	lsm6	95	94.737	Labrus_bergylta
ENSCING00000019152	-	93	96.053	ENSLACG00000006937	LSM6	95	96.053	Latimeria_chalumnae
ENSCING00000019152	-	93	93.421	ENSLOCG00000017683	-	95	93.421	Lepisosteus_oculatus
ENSCING00000019152	-	93	94.737	ENSLOCG00000008852	lsm6	95	94.737	Lepisosteus_oculatus
ENSCING00000019152	-	93	96.053	ENSLAFG00000001952	LSM6	95	96.053	Loxodonta_africana
ENSCING00000019152	-	93	96.053	ENSMFAG00000033073	LSM6	95	96.053	Macaca_fascicularis
ENSCING00000019152	-	93	72.368	ENSMNEG00000040412	-	94	72.368	Macaca_nemestrina
ENSCING00000019152	-	93	96.053	ENSMNEG00000034820	-	95	96.053	Macaca_nemestrina
ENSCING00000019152	-	93	96.053	ENSMLEG00000035153	LSM6	95	96.053	Mandrillus_leucophaeus
ENSCING00000019152	-	93	94.737	ENSMAMG00000014029	lsm6	95	94.737	Mastacembelus_armatus
ENSCING00000019152	-	93	94.737	ENSMZEG00005009146	lsm6	95	94.737	Maylandia_zebra
ENSCING00000019152	-	93	96.053	ENSMGAG00000003802	LSM6	95	96.053	Meleagris_gallopavo
ENSCING00000019152	-	93	96.053	ENSMAUG00000014938	Lsm6	95	96.053	Mesocricetus_auratus
ENSCING00000019152	-	91	88.000	ENSMICG00000047411	-	88	88.000	Microcebus_murinus
ENSCING00000019152	-	93	96.053	ENSMICG00000042599	LSM6	95	96.053	Microcebus_murinus
ENSCING00000019152	-	93	96.053	ENSMOCG00000020049	Lsm6	95	96.053	Microtus_ochrogaster
ENSCING00000019152	-	93	94.737	ENSMMOG00000005470	lsm6	95	94.737	Mola_mola
ENSCING00000019152	-	93	88.158	ENSMMOG00000007379	-	95	88.158	Mola_mola
ENSCING00000019152	-	93	96.053	ENSMODG00000000526	LSM6	95	96.053	Monodelphis_domestica
ENSCING00000019152	-	93	94.737	ENSMALG00000002419	lsm6	95	94.737	Monopterus_albus
ENSCING00000019152	-	93	96.053	MGP_CAROLIEiJ_G0031245	Lsm6	95	96.053	Mus_caroli
ENSCING00000019152	-	93	96.053	ENSMUSG00000031683	Lsm6	95	96.053	Mus_musculus
ENSCING00000019152	-	93	96.053	MGP_PahariEiJ_G0022851	Lsm6	95	96.053	Mus_pahari
ENSCING00000019152	-	93	96.053	MGP_SPRETEiJ_G0032365	Lsm6	95	96.053	Mus_spretus
ENSCING00000019152	-	93	96.053	ENSMPUG00000006936	LSM6	88	96.053	Mustela_putorius_furo
ENSCING00000019152	-	93	96.053	ENSMLUG00000026355	LSM6	95	96.053	Myotis_lucifugus
ENSCING00000019152	-	93	96.053	ENSNGAG00000019116	Lsm6	95	96.053	Nannospalax_galili
ENSCING00000019152	-	93	94.737	ENSNBRG00000004887	lsm6	95	94.737	Neolamprologus_brichardi
ENSCING00000019152	-	93	96.053	ENSNLEG00000005584	LSM6	95	96.053	Nomascus_leucogenys
ENSCING00000019152	-	93	96.053	ENSOPRG00000011199	LSM6	95	96.053	Ochotona_princeps
ENSCING00000019152	-	90	85.135	ENSODEG00000018684	-	96	85.135	Octodon_degus
ENSCING00000019152	-	93	94.737	ENSODEG00000002307	-	95	94.737	Octodon_degus
ENSCING00000019152	-	93	94.737	ENSODEG00000019419	-	95	94.737	Octodon_degus
ENSCING00000019152	-	93	93.421	ENSODEG00000020420	-	95	93.421	Octodon_degus
ENSCING00000019152	-	93	94.737	ENSONIG00000010005	lsm6	95	94.737	Oreochromis_niloticus
ENSCING00000019152	-	93	72.368	ENSOANG00000006895	-	97	72.368	Ornithorhynchus_anatinus
ENSCING00000019152	-	93	72.368	ENSOANG00000006894	-	97	72.368	Ornithorhynchus_anatinus
ENSCING00000019152	-	93	94.737	ENSORLG00000024158	lsm6	95	94.737	Oryzias_latipes
ENSCING00000019152	-	93	94.737	ENSORLG00020017383	lsm6	95	94.737	Oryzias_latipes_hni
ENSCING00000019152	-	93	94.737	ENSORLG00015016903	lsm6	95	94.737	Oryzias_latipes_hsok
ENSCING00000019152	-	93	94.737	ENSOMEG00000000074	lsm6	95	94.737	Oryzias_melastigma
ENSCING00000019152	-	93	96.053	ENSOGAG00000026665	-	95	96.053	Otolemur_garnettii
ENSCING00000019152	-	93	96.053	ENSOGAG00000033153	-	95	96.053	Otolemur_garnettii
ENSCING00000019152	-	93	92.105	ENSOARG00000011641	-	88	92.105	Ovis_aries
ENSCING00000019152	-	80	98.485	ENSOARG00000008509	-	85	98.485	Ovis_aries
ENSCING00000019152	-	93	96.053	ENSPPAG00000037929	LSM6	95	96.053	Pan_paniscus
ENSCING00000019152	-	93	96.053	ENSPPRG00000012806	LSM6	95	96.053	Panthera_pardus
ENSCING00000019152	-	93	96.053	ENSPTIG00000019769	LSM6	95	96.053	Panthera_tigris_altaica
ENSCING00000019152	-	93	96.053	ENSPTRG00000016488	LSM6	95	96.053	Pan_troglodytes
ENSCING00000019152	-	93	96.053	ENSPANG00000006552	LSM6	95	96.053	Papio_anubis
ENSCING00000019152	-	93	94.737	ENSPKIG00000016176	lsm6	95	94.737	Paramormyrops_kingsleyae
ENSCING00000019152	-	93	96.053	ENSPSIG00000016942	LSM6	95	96.053	Pelodiscus_sinensis
ENSCING00000019152	-	93	94.737	ENSPMGG00000018004	lsm6	95	94.737	Periophthalmus_magnuspinnatus
ENSCING00000019152	-	93	96.053	ENSPEMG00000012410	Lsm6	95	96.053	Peromyscus_maniculatus_bairdii
ENSCING00000019152	-	93	96.053	ENSPMAG00000006949	lsm6	95	96.053	Petromyzon_marinus
ENSCING00000019152	-	93	96.053	ENSPCIG00000023469	LSM6	77	98.485	Phascolarctos_cinereus
ENSCING00000019152	-	93	94.737	ENSPFOG00000008881	lsm6	95	94.737	Poecilia_formosa
ENSCING00000019152	-	93	94.737	ENSPLAG00000003202	lsm6	95	94.737	Poecilia_latipinna
ENSCING00000019152	-	93	94.737	ENSPMEG00000004000	lsm6	95	94.737	Poecilia_mexicana
ENSCING00000019152	-	93	94.737	ENSPREG00000023235	lsm6	95	94.737	Poecilia_reticulata
ENSCING00000019152	-	93	96.053	ENSPPYG00000015105	LSM6	95	96.053	Pongo_abelii
ENSCING00000019152	-	93	96.053	ENSPCOG00000013899	LSM6	95	96.053	Propithecus_coquereli
ENSCING00000019152	-	93	94.737	ENSPNYG00000012614	lsm6	95	94.737	Pundamilia_nyererei
ENSCING00000019152	-	93	94.737	ENSPNAG00000018779	lsm6	95	94.737	Pygocentrus_nattereri
ENSCING00000019152	-	93	96.053	ENSRNOG00000030374	Lsm6	95	96.053	Rattus_norvegicus
ENSCING00000019152	-	93	96.053	ENSRNOG00000049370	LOC100360750	95	96.053	Rattus_norvegicus
ENSCING00000019152	-	93	96.053	ENSRBIG00000027878	LSM6	95	96.053	Rhinopithecus_bieti
ENSCING00000019152	-	93	96.053	ENSRROG00000024868	LSM6	95	96.053	Rhinopithecus_roxellana
ENSCING00000019152	-	85	44.595	YDR378C	-	86	48.649	Saccharomyces_cerevisiae
ENSCING00000019152	-	91	69.333	ENSSBOG00000028103	-	93	69.333	Saimiri_boliviensis_boliviensis
ENSCING00000019152	-	93	96.053	ENSSBOG00000021229	-	95	96.053	Saimiri_boliviensis_boliviensis
ENSCING00000019152	-	93	94.737	ENSSFOG00015016480	lsm6	95	94.737	Scleropages_formosus
ENSCING00000019152	-	93	94.737	ENSSMAG00000004550	lsm6	95	94.737	Scophthalmus_maximus
ENSCING00000019152	-	80	95.455	ENSSLDG00000004136	-	57	95.455	Seriola_lalandi_dorsalis
ENSCING00000019152	-	93	94.737	ENSSLDG00000020533	lsm6	79	94.737	Seriola_lalandi_dorsalis
ENSCING00000019152	-	57	95.745	ENSSARG00000000689	LSM6	98	95.745	Sorex_araneus
ENSCING00000019152	-	93	96.053	ENSSPUG00000008657	LSM6	95	96.053	Sphenodon_punctatus
ENSCING00000019152	-	93	94.737	ENSSPAG00000003246	lsm6	95	94.737	Stegastes_partitus
ENSCING00000019152	-	93	96.053	ENSSSCG00000035973	LSM6	95	96.053	Sus_scrofa
ENSCING00000019152	-	93	96.053	ENSTGUG00000002663	LSM6	95	96.053	Taeniopygia_guttata
ENSCING00000019152	-	93	94.737	ENSTRUG00000023398	lsm6	95	94.737	Takifugu_rubripes
ENSCING00000019152	-	93	94.737	ENSTNIG00000017725	lsm6	95	94.737	Tetraodon_nigroviridis
ENSCING00000019152	-	93	96.053	ENSTTRG00000004609	LSM6	95	96.053	Tursiops_truncatus
ENSCING00000019152	-	91	89.333	ENSUAMG00000014213	LSM6	61	89.333	Ursus_americanus
ENSCING00000019152	-	91	89.333	ENSUMAG00000015727	LSM6	61	89.333	Ursus_maritimus
ENSCING00000019152	-	93	96.053	ENSVPAG00000006922	LSM6	95	96.053	Vicugna_pacos
ENSCING00000019152	-	93	96.053	ENSVVUG00000009254	LSM6	65	96.053	Vulpes_vulpes
ENSCING00000019152	-	93	96.053	ENSXETG00000023683	lsm6	95	96.053	Xenopus_tropicalis
ENSCING00000019152	-	93	94.737	ENSXMAG00000009606	lsm6	95	94.737	Xiphophorus_maculatus