EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000019565 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1131 bases
Position: chr11:4130763-4131893
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000032808	RTC	PF01137.21	3.8e-57	1	1
ENSCINP00000032808	RTC_insert	PF05189.13	5.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036855	-	1131	-	ENSCINP00000032808	376 (aa)	-	H2XT24

Gene Model

Click here to download ENSCING00000019565's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000019565's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000019565	-	98	58.919	ENSG00000120158	RCL1	99	58.525	Homo_sapiens
ENSCING00000019565	-	99	57.067	ENSAPOG00000015666	rcl1	100	57.067	Acanthochromis_polyacanthus
ENSCING00000019565	-	98	59.189	ENSAMEG00000002631	RCL1	98	59.189	Ailuropoda_melanoleuca
ENSCING00000019565	-	98	59.459	ENSACIG00000021195	rcl1	99	59.459	Amphilophus_citrinellus
ENSCING00000019565	-	99	57.600	ENSAOCG00000002223	rcl1	100	57.600	Amphiprion_ocellaris
ENSCING00000019565	-	99	57.867	ENSAPEG00000006905	rcl1	100	57.867	Amphiprion_percula
ENSCING00000019565	-	98	59.189	ENSATEG00000020026	rcl1	99	59.189	Anabas_testudineus
ENSCING00000019565	-	88	58.434	ENSAPLG00000006031	RCL1	100	58.434	Anas_platyrhynchos
ENSCING00000019565	-	98	58.108	ENSACAG00000003640	RCL1	98	58.108	Anolis_carolinensis
ENSCING00000019565	-	98	59.189	ENSANAG00000037372	RCL1	98	59.189	Aotus_nancymaae
ENSCING00000019565	-	98	60.000	ENSACLG00000021724	rcl1	99	60.000	Astatotilapia_calliptera
ENSCING00000019565	-	99	58.177	ENSAMXG00000033394	rcl1	100	58.177	Astyanax_mexicanus
ENSCING00000019565	-	98	42.895	WBGene00022852	ZK1127.5	98	42.895	Caenorhabditis_elegans
ENSCING00000019565	-	98	58.649	ENSCJAG00000011202	RCL1	98	58.649	Callithrix_jacchus
ENSCING00000019565	-	98	58.919	ENSCAFG00000002091	RCL1	98	58.919	Canis_familiaris
ENSCING00000019565	-	98	59.189	ENSCAFG00020000638	RCL1	77	59.189	Canis_lupus_dingo
ENSCING00000019565	-	98	57.838	ENSCHIG00000012407	RCL1	98	57.838	Capra_hircus
ENSCING00000019565	-	88	58.006	ENSTSYG00000009592	RCL1	97	59.459	Carlito_syrichta
ENSCING00000019565	-	66	49.383	ENSCAPG00000013575	RCL1	100	49.383	Cavia_aperea
ENSCING00000019565	-	98	58.919	ENSCPOG00000015354	RCL1	98	58.919	Cavia_porcellus
ENSCING00000019565	-	98	59.189	ENSCCAG00000033505	RCL1	98	59.189	Cebus_capucinus
ENSCING00000019565	-	98	58.919	ENSCATG00000034721	RCL1	98	58.919	Cercocebus_atys
ENSCING00000019565	-	98	59.730	ENSCLAG00000007445	RCL1	98	59.730	Chinchilla_lanigera
ENSCING00000019565	-	98	58.919	ENSCSAG00000008811	RCL1	98	58.919	Chlorocebus_sabaeus
ENSCING00000019565	-	84	49.051	ENSCHOG00000007216	RCL1	98	49.051	Choloepus_hoffmanni
ENSCING00000019565	-	98	58.649	ENSCPBG00000025481	RCL1	94	56.928	Chrysemys_picta_bellii
ENSCING00000019565	-	98	58.919	ENSCANG00000027099	RCL1	98	58.919	Colobus_angolensis_palliatus
ENSCING00000019565	-	98	59.189	ENSCGRG00001013748	Rcl1	98	59.189	Cricetulus_griseus_chok1gshd
ENSCING00000019565	-	88	57.831	ENSCGRG00000005843	Rcl1	99	57.831	Cricetulus_griseus_crigri
ENSCING00000019565	-	98	59.189	ENSCSEG00000000712	rcl1	97	59.189	Cynoglossus_semilaevis
ENSCING00000019565	-	98	59.459	ENSCVAG00000011536	rcl1	99	59.459	Cyprinodon_variegatus
ENSCING00000019565	-	98	56.486	ENSDARG00000038312	rcl1	100	56.486	Danio_rerio
ENSCING00000019565	-	71	57.463	ENSDNOG00000019911	RCL1	99	59.447	Dasypus_novemcinctus
ENSCING00000019565	-	98	59.189	ENSDORG00000015645	Rcl1	98	59.189	Dipodomys_ordii
ENSCING00000019565	-	98	51.467	FBgn0020909	Rtc1	98	51.467	Drosophila_melanogaster
ENSCING00000019565	-	66	48.594	ENSETEG00000014087	-	75	48.594	Echinops_telfairi
ENSCING00000019565	-	99	47.861	ENSEBUG00000016621	-	99	47.861	Eptatretus_burgeri
ENSCING00000019565	-	98	58.649	ENSEASG00005010653	RCL1	98	58.649	Equus_asinus_asinus
ENSCING00000019565	-	98	58.378	ENSECAG00000015973	RCL1	98	58.378	Equus_caballus
ENSCING00000019565	-	98	51.081	ENSEEUG00000009801	RCL1	98	51.081	Erinaceus_europaeus
ENSCING00000019565	-	99	56.684	ENSELUG00000007353	rcl1	100	56.684	Esox_lucius
ENSCING00000019565	-	98	58.919	ENSFCAG00000014557	RCL1	98	58.919	Felis_catus
ENSCING00000019565	-	97	55.041	ENSFALG00000010553	RCL1	96	55.041	Ficedula_albicollis
ENSCING00000019565	-	88	57.402	ENSFDAG00000004209	RCL1	100	57.402	Fukomys_damarensis
ENSCING00000019565	-	99	60.000	ENSFHEG00000011228	rcl1	99	60.541	Fundulus_heteroclitus
ENSCING00000019565	-	98	62.432	ENSGMOG00000004677	rcl1	99	62.432	Gadus_morhua
ENSCING00000019565	-	98	59.730	ENSGALG00000015024	RCL1	98	59.730	Gallus_gallus
ENSCING00000019565	-	98	58.919	ENSGAFG00000007257	rcl1	99	58.919	Gambusia_affinis
ENSCING00000019565	-	99	58.400	ENSGACG00000017474	rcl1	100	58.400	Gasterosteus_aculeatus
ENSCING00000019565	-	98	58.760	ENSGAGG00000003689	RCL1	98	58.760	Gopherus_agassizii
ENSCING00000019565	-	98	58.649	ENSGGOG00000015041	RCL1	98	58.649	Gorilla_gorilla
ENSCING00000019565	-	98	60.000	ENSHBUG00000001393	rcl1	99	60.000	Haplochromis_burtoni
ENSCING00000019565	-	98	58.919	ENSHGLG00000016452	RCL1	98	58.919	Heterocephalus_glaber_female
ENSCING00000019565	-	98	50.678	ENSHGLG00000005368	-	98	50.678	Heterocephalus_glaber_female
ENSCING00000019565	-	98	54.054	ENSHGLG00100008718	-	98	54.054	Heterocephalus_glaber_male
ENSCING00000019565	-	98	51.762	ENSHGLG00100018010	-	98	51.762	Heterocephalus_glaber_male
ENSCING00000019565	-	99	58.933	ENSHCOG00000020170	rcl1	100	58.933	Hippocampus_comes
ENSCING00000019565	-	99	58.445	ENSIPUG00000018054	RCL1	100	58.445	Ictalurus_punctatus
ENSCING00000019565	-	98	59.730	ENSSTOG00000000023	RCL1	98	59.730	Ictidomys_tridecemlineatus
ENSCING00000019565	-	54	39.901	ENSJJAG00000000764	-	97	39.901	Jaculus_jaculus
ENSCING00000019565	-	98	52.973	ENSJJAG00000015632	-	98	52.973	Jaculus_jaculus
ENSCING00000019565	-	98	59.459	ENSJJAG00000022803	-	98	59.459	Jaculus_jaculus
ENSCING00000019565	-	98	59.189	ENSKMAG00000011946	rcl1	99	59.189	Kryptolebias_marmoratus
ENSCING00000019565	-	98	56.757	ENSLBEG00000003957	rcl1	99	56.757	Labrus_bergylta
ENSCING00000019565	-	85	58.385	ENSLACG00000004594	RCL1	100	58.385	Latimeria_chalumnae
ENSCING00000019565	-	99	58.667	ENSLOCG00000010148	rcl1	98	58.667	Lepisosteus_oculatus
ENSCING00000019565	-	98	58.919	ENSLAFG00000017495	RCL1	98	58.919	Loxodonta_africana
ENSCING00000019565	-	98	58.919	ENSMFAG00000037906	RCL1	98	58.919	Macaca_fascicularis
ENSCING00000019565	-	98	58.919	ENSMNEG00000012288	RCL1	98	58.919	Macaca_nemestrina
ENSCING00000019565	-	98	58.919	ENSMLEG00000043088	RCL1	98	58.919	Mandrillus_leucophaeus
ENSCING00000019565	-	98	61.351	ENSMAMG00000008311	rcl1	99	61.351	Mastacembelus_armatus
ENSCING00000019565	-	98	60.000	ENSMZEG00005017292	rcl1	99	60.000	Maylandia_zebra
ENSCING00000019565	-	58	57.919	ENSMGAG00000002245	RCL1	99	57.919	Meleagris_gallopavo
ENSCING00000019565	-	58	58.986	ENSMAUG00000008922	Rcl1	99	58.986	Mesocricetus_auratus
ENSCING00000019565	-	98	59.459	ENSMICG00000015562	RCL1	98	59.459	Microcebus_murinus
ENSCING00000019565	-	98	58.919	ENSMOCG00000012145	Rcl1	98	58.919	Microtus_ochrogaster
ENSCING00000019565	-	98	58.491	ENSMMOG00000021264	rcl1	99	58.491	Mola_mola
ENSCING00000019565	-	89	59.644	ENSMODG00000015377	RCL1	90	59.644	Monodelphis_domestica
ENSCING00000019565	-	98	58.919	ENSMALG00000018618	rcl1	99	58.919	Monopterus_albus
ENSCING00000019565	-	98	58.919	MGP_CAROLIEiJ_G0022853	Rcl1	98	58.919	Mus_caroli
ENSCING00000019565	-	98	58.649	ENSMUSG00000024785	Rcl1	98	58.649	Mus_musculus
ENSCING00000019565	-	98	58.919	MGP_PahariEiJ_G0014346	Rcl1	100	58.621	Mus_pahari
ENSCING00000019565	-	98	58.649	MGP_SPRETEiJ_G0023771	Rcl1	100	58.621	Mus_spretus
ENSCING00000019565	-	98	59.189	ENSMPUG00000004998	RCL1	98	59.189	Mustela_putorius_furo
ENSCING00000019565	-	98	58.919	ENSMLUG00000009654	RCL1	98	58.919	Myotis_lucifugus
ENSCING00000019565	-	98	58.649	ENSNGAG00000015327	Rcl1	98	58.649	Nannospalax_galili
ENSCING00000019565	-	92	56.647	ENSNBRG00000019854	rcl1	96	55.125	Neolamprologus_brichardi
ENSCING00000019565	-	98	56.486	ENSNLEG00000008891	RCL1	98	56.486	Nomascus_leucogenys
ENSCING00000019565	-	98	55.676	ENSMEUG00000007653	RCL1	98	55.676	Notamacropus_eugenii
ENSCING00000019565	-	98	59.459	ENSOPRG00000010965	RCL1	98	59.459	Ochotona_princeps
ENSCING00000019565	-	88	48.943	ENSODEG00000004151	RCL1	96	48.943	Octodon_degus
ENSCING00000019565	-	98	59.459	ENSONIG00000003871	rcl1	99	59.459	Oreochromis_niloticus
ENSCING00000019565	-	66	57.143	ENSOANG00000013193	-	98	57.143	Ornithorhynchus_anatinus
ENSCING00000019565	-	98	59.459	ENSOCUG00000008161	RCL1	98	59.459	Oryctolagus_cuniculus
ENSCING00000019565	-	98	57.838	ENSORLG00000010443	rcl1	99	57.838	Oryzias_latipes
ENSCING00000019565	-	98	58.378	ENSORLG00020012211	rcl1	99	58.378	Oryzias_latipes_hni
ENSCING00000019565	-	98	58.108	ENSORLG00015001122	rcl1	99	58.108	Oryzias_latipes_hsok
ENSCING00000019565	-	100	59.151	ENSOMEG00000022976	rcl1	88	59.151	Oryzias_melastigma
ENSCING00000019565	-	98	58.649	ENSOGAG00000007480	RCL1	98	58.649	Otolemur_garnettii
ENSCING00000019565	-	98	58.108	ENSOARG00000013463	RCL1	98	58.108	Ovis_aries
ENSCING00000019565	-	98	58.649	ENSPPAG00000037958	RCL1	98	58.649	Pan_paniscus
ENSCING00000019565	-	98	58.649	ENSPPRG00000022645	RCL1	98	58.649	Panthera_pardus
ENSCING00000019565	-	88	57.576	ENSPTIG00000019031	RCL1	99	58.986	Panthera_tigris_altaica
ENSCING00000019565	-	98	58.649	ENSPTRG00000020743	RCL1	98	58.649	Pan_troglodytes
ENSCING00000019565	-	98	58.919	ENSPANG00000025151	RCL1	98	58.919	Papio_anubis
ENSCING00000019565	-	99	59.200	ENSPKIG00000021022	rcl1	100	59.200	Paramormyrops_kingsleyae
ENSCING00000019565	-	88	57.229	ENSPSIG00000012302	RCL1	100	57.229	Pelodiscus_sinensis
ENSCING00000019565	-	99	57.600	ENSPMGG00000024007	rcl1	100	57.600	Periophthalmus_magnuspinnatus
ENSCING00000019565	-	98	58.919	ENSPEMG00000023275	Rcl1	98	58.919	Peromyscus_maniculatus_bairdii
ENSCING00000019565	-	98	59.189	ENSPCIG00000000188	RCL1	98	59.189	Phascolarctos_cinereus
ENSCING00000019565	-	98	58.919	ENSPFOG00000019682	rcl1	98	58.919	Poecilia_formosa
ENSCING00000019565	-	98	59.189	ENSPLAG00000022354	rcl1	99	59.189	Poecilia_latipinna
ENSCING00000019565	-	98	58.919	ENSPMEG00000008131	rcl1	99	58.919	Poecilia_mexicana
ENSCING00000019565	-	98	58.649	ENSPREG00000008032	rcl1	99	58.649	Poecilia_reticulata
ENSCING00000019565	-	98	58.649	ENSPPYG00000019244	RCL1	98	58.649	Pongo_abelii
ENSCING00000019565	-	98	54.595	ENSPCAG00000001440	RCL1	98	54.595	Procavia_capensis
ENSCING00000019565	-	98	58.919	ENSPCOG00000009611	RCL1	98	58.919	Propithecus_coquereli
ENSCING00000019565	-	98	59.189	ENSPVAG00000015752	RCL1	98	59.189	Pteropus_vampyrus
ENSCING00000019565	-	98	60.000	ENSPNYG00000012910	rcl1	99	60.000	Pundamilia_nyererei
ENSCING00000019565	-	99	58.602	ENSPNAG00000028307	rcl1	91	58.602	Pygocentrus_nattereri
ENSCING00000019565	-	98	59.189	ENSRNOG00000015491	Rcl1	98	59.189	Rattus_norvegicus
ENSCING00000019565	-	98	58.649	ENSRBIG00000035818	RCL1	98	58.649	Rhinopithecus_bieti
ENSCING00000019565	-	98	58.919	ENSRROG00000029781	RCL1	98	58.919	Rhinopithecus_roxellana
ENSCING00000019565	-	97	37.127	YOL010W	-	97	37.127	Saccharomyces_cerevisiae
ENSCING00000019565	-	98	58.919	ENSSBOG00000026369	RCL1	98	58.919	Saimiri_boliviensis_boliviensis
ENSCING00000019565	-	89	56.587	ENSSHAG00000014086	RCL1	100	56.587	Sarcophilus_harrisii
ENSCING00000019565	-	99	56.533	ENSSFOG00015023020	rcl1	100	56.533	Scleropages_formosus
ENSCING00000019565	-	99	58.933	ENSSMAG00000019751	rcl1	86	58.933	Scophthalmus_maximus
ENSCING00000019565	-	99	58.667	ENSSDUG00000006349	rcl1	100	58.667	Seriola_dumerili
ENSCING00000019565	-	99	58.400	ENSSLDG00000022076	rcl1	100	58.400	Seriola_lalandi_dorsalis
ENSCING00000019565	-	98	58.378	ENSSARG00000009260	RCL1	98	58.378	Sorex_araneus
ENSCING00000019565	-	98	58.649	ENSSPUG00000016330	RCL1	98	58.649	Sphenodon_punctatus
ENSCING00000019565	-	99	58.133	ENSSPAG00000018038	rcl1	100	58.133	Stegastes_partitus
ENSCING00000019565	-	98	59.189	ENSSSCG00000005217	RCL1	81	59.189	Sus_scrofa
ENSCING00000019565	-	98	58.602	ENSTGUG00000005138	RCL1	98	58.602	Taeniopygia_guttata
ENSCING00000019565	-	98	58.649	ENSTRUG00000010493	rcl1	99	58.649	Takifugu_rubripes
ENSCING00000019565	-	98	58.108	ENSTNIG00000013214	rcl1	98	58.108	Tetraodon_nigroviridis
ENSCING00000019565	-	98	55.135	ENSTBEG00000016339	RCL1	98	55.135	Tupaia_belangeri
ENSCING00000019565	-	98	58.919	ENSTTRG00000016525	RCL1	98	58.919	Tursiops_truncatus
ENSCING00000019565	-	98	59.189	ENSUAMG00000005598	RCL1	98	60.252	Ursus_americanus
ENSCING00000019565	-	88	57.100	ENSUMAG00000017890	RCL1	97	57.100	Ursus_maritimus
ENSCING00000019565	-	88	57.402	ENSVPAG00000009188	RCL1	100	57.402	Vicugna_pacos
ENSCING00000019565	-	88	57.831	ENSVVUG00000007304	RCL1	89	57.831	Vulpes_vulpes
ENSCING00000019565	-	98	54.987	ENSXETG00000000592	rcl1	98	54.987	Xenopus_tropicalis
ENSCING00000019565	-	98	59.189	ENSXCOG00000004922	rcl1	99	59.189	Xiphophorus_couchianus
ENSCING00000019565	-	98	59.189	ENSXMAG00000022366	RCL1	99	59.189	Xiphophorus_maculatus