EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCING00000020625 (Gene tree)
Gene ID
100180713
Gene Symbol
-
Alias
-
Full Name
U6 snRNA-associated Sm-like protein LSm5
Gene Type
protein_coding
Species
Ciona_intestinalis
Status
putative
Strand
Minus strand
Length
1377 bases
Position
chr12:4200420-4201796
Accession
100180713
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCINP00000035357LSMPF01423.222.1e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCINT00000036997-799XM_002126859ENSCINP0000003535789 (aa)XP_002126895H2Y0C3
Gene Model
Click here to download ENSCING00000020625's gene model file
Pathways
Pathway IDPathway NameSource
cin03018RNA degradationKEGG
cin03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000020625's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCING00000020625-9988.764ENSG00000106355LSM510090.323Homo_sapiens
ENSCING00000020625-8983.544ENSAPOG00000011743LSM510087.097Acanthochromis_polyacanthus
ENSCING00000020625-9984.091ENSAPOG00000020779LSM59784.091Acanthochromis_polyacanthus
ENSCING00000020625-9988.764ENSAMEG00000006700LSM59888.764Ailuropoda_melanoleuca
ENSCING00000020625-9852.874ENSACIG00000019185lsm59852.874Amphilophus_citrinellus
ENSCING00000020625-9984.091ENSAOCG00000001636lsm59784.091Amphiprion_ocellaris
ENSCING00000020625-9984.091ENSAPEG00000008151lsm59784.091Amphiprion_percula
ENSCING00000020625-7087.097ENSAPEG00000008201lsm510087.097Amphiprion_percula
ENSCING00000020625-8787.013ENSATEG00000020470lsm59253.488Anabas_testudineus
ENSCING00000020625-8390.541ENSAPLG00000008171LSM510090.541Anas_platyrhynchos
ENSCING00000020625-6090.741ENSACAG00000009530LSM59090.741Anolis_carolinensis
ENSCING00000020625-9986.517ENSANAG00000024192-9386.517Aotus_nancymaae
ENSCING00000020625-9968.539ENSANAG00000037758-9768.539Aotus_nancymaae
ENSCING00000020625-9989.888ENSANAG00000034409-9889.888Aotus_nancymaae
ENSCING00000020625-9886.207ENSACLG00000012891lsm59986.207Astatotilapia_calliptera
ENSCING00000020625-9774.157ENSAMXG00000035543lsm59574.157Astyanax_mexicanus
ENSCING00000020625-9988.764ENSBTAG00000002332LSM59888.764Bos_taurus
ENSCING00000020625-9973.864WBGene00003079lsm-59773.864Caenorhabditis_elegans
ENSCING00000020625-9776.744ENSCJAG00000005678-9676.744Callithrix_jacchus
ENSCING00000020625-9988.764ENSCJAG00000047379LSM57882.000Callithrix_jacchus
ENSCING00000020625-9987.640ENSCAFG00000019261-9887.640Canis_familiaris
ENSCING00000020625-5383.333ENSCAFG00000030781-5683.333Canis_familiaris
ENSCING00000020625-9988.764ENSCAFG00020004946LSM59888.764Canis_lupus_dingo
ENSCING00000020625-7967.143ENSCHIG00000021428-9165.476Capra_hircus
ENSCING00000020625-9988.764ENSCHIG00000024539LSM59888.764Capra_hircus
ENSCING00000020625-9986.517ENSCHIG00000004079-9886.517Capra_hircus
ENSCING00000020625-9968.539ENSTSYG00000036637-9768.539Carlito_syrichta
ENSCING00000020625-9971.910ENSTSYG00000026530-8971.910Carlito_syrichta
ENSCING00000020625-9988.764ENSTSYG00000006449-9888.764Carlito_syrichta
ENSCING00000020625-9978.652ENSTSYG00000028728-9878.652Carlito_syrichta
ENSCING00000020625-8481.333ENSCAPG00000006980LSM510081.333Cavia_aperea
ENSCING00000020625-9988.764ENSCPOG00000036386LSM59888.764Cavia_porcellus
ENSCING00000020625-9970.787ENSCCAG00000032792-9770.787Cebus_capucinus
ENSCING00000020625-9988.764ENSCCAG00000037808-9888.764Cebus_capucinus
ENSCING00000020625-9986.517ENSCCAG00000032123-9886.517Cebus_capucinus
ENSCING00000020625-9263.415ENSCCAG00000037334-8863.415Cebus_capucinus
ENSCING00000020625-9987.640ENSCCAG00000000821-9887.640Cebus_capucinus
ENSCING00000020625-9980.899ENSCATG00000014790-9388.889Cercocebus_atys
ENSCING00000020625-9988.764ENSCATG00000040218LSM510090.323Cercocebus_atys
ENSCING00000020625-9775.581ENSCLAG00000005062-8575.581Chinchilla_lanigera
ENSCING00000020625-9988.764ENSCLAG00000000202LSM59888.764Chinchilla_lanigera
ENSCING00000020625-8187.671ENSCHOG00000005335LSM59687.671Choloepus_hoffmanni
ENSCING00000020625-9988.764ENSCPBG00000013685LSM59888.764Chrysemys_picta_bellii
ENSCING00000020625-9798.837ENSCSAVG00000001439-9898.837Ciona_savignyi
ENSCING00000020625-9988.764ENSCANG00000039909LSM510090.323Colobus_angolensis_palliatus
ENSCING00000020625-9988.764ENSCGRG00001015461Lsm59888.764Cricetulus_griseus_chok1gshd
ENSCING00000020625-8489.333ENSCGRG00000007677Lsm510089.333Cricetulus_griseus_crigri
ENSCING00000020625-5182.222ENSCSEG00000015286lsm57682.222Cynoglossus_semilaevis
ENSCING00000020625-9787.209ENSCVAG00000004262lsm59587.209Cyprinodon_variegatus
ENSCING00000020625-9787.209ENSDARG00000071573lsm510087.097Danio_rerio
ENSCING00000020625-9478.824ENSDNOG00000049495-9378.824Dasypus_novemcinctus
ENSCING00000020625-9988.764ENSDNOG00000034958LSM59888.764Dasypus_novemcinctus
ENSCING00000020625-9988.764ENSDORG00000009422Lsm59888.764Dipodomys_ordii
ENSCING00000020625-9182.716FBgn0035675CG66108982.716Drosophila_melanogaster
ENSCING00000020625-8371.622ENSETEG00000016074-9871.622Echinops_telfairi
ENSCING00000020625-9867.816ENSETEG00000001469-9567.816Echinops_telfairi
ENSCING00000020625-8158.333ENSETEG00000000777-9259.524Echinops_telfairi
ENSCING00000020625-9971.591ENSETEG00000010651-9771.591Echinops_telfairi
ENSCING00000020625-9988.764ENSETEG00000018068LSM59888.764Echinops_telfairi
ENSCING00000020625-9786.047ENSEBUG00000008540lsm59586.047Eptatretus_burgeri
ENSCING00000020625-9988.764ENSEASG00005003500LSM59888.764Equus_asinus_asinus
ENSCING00000020625-9977.528ENSECAG00000018445LSM59877.528Equus_caballus
ENSCING00000020625-6586.207ENSEEUG00000004102LSM59786.207Erinaceus_europaeus
ENSCING00000020625-9787.209ENSELUG00000007792lsm59587.209Esox_lucius
ENSCING00000020625-9988.764ENSFCAG00000000230LSM59888.764Felis_catus
ENSCING00000020625-8589.474ENSFALG00000001892LSM59289.474Ficedula_albicollis
ENSCING00000020625-9988.764ENSFDAG00000008767LSM59888.764Fukomys_damarensis
ENSCING00000020625-9259.756ENSFDAG00000008685-9759.756Fukomys_damarensis
ENSCING00000020625-10068.889ENSFHEG00000004011lsm59868.889Fundulus_heteroclitus
ENSCING00000020625-9688.235ENSGMOG00000018235lsm59488.235Gadus_morhua
ENSCING00000020625-9988.764ENSGALG00000041625LSM59888.764Gallus_gallus
ENSCING00000020625-7087.097ENSGAFG00000016824lsm510087.097Gambusia_affinis
ENSCING00000020625-9786.047ENSGACG00000005528lsm59586.047Gasterosteus_aculeatus
ENSCING00000020625-9988.764ENSGAGG00000015593LSM59888.764Gopherus_agassizii
ENSCING00000020625-9988.764ENSGGOG00000043469LSM59888.764Gorilla_gorilla
ENSCING00000020625-9886.207ENSHBUG00000013773lsm59986.207Haplochromis_burtoni
ENSCING00000020625-9988.764ENSHGLG00000011765LSM59888.764Heterocephalus_glaber_female
ENSCING00000020625-9985.393ENSHGLG00100015610LSM59885.393Heterocephalus_glaber_male
ENSCING00000020625-9753.488ENSHCOG00000008288lsm59253.488Hippocampus_comes
ENSCING00000020625-9787.209ENSIPUG00000021095LSM59587.209Ictalurus_punctatus
ENSCING00000020625-9988.764ENSSTOG00000012662LSM59888.764Ictidomys_tridecemlineatus
ENSCING00000020625-9475.581ENSSTOG00000033886-9775.581Ictidomys_tridecemlineatus
ENSCING00000020625-9964.045ENSJJAG00000016144-9064.045Jaculus_jaculus
ENSCING00000020625-9788.372ENSJJAG00000012145-9588.372Jaculus_jaculus
ENSCING00000020625-8383.784ENSJJAG00000004475-9483.784Jaculus_jaculus
ENSCING00000020625-9984.091ENSKMAG00000021861lsm59784.091Kryptolebias_marmoratus
ENSCING00000020625-9780.233ENSLBEG00000009235LSM56680.233Labrus_bergylta
ENSCING00000020625-6174.074ENSLBEG00000017379lsm58974.074Labrus_bergylta
ENSCING00000020625-9986.517ENSLACG00000022448LSM59886.517Latimeria_chalumnae
ENSCING00000020625-9986.364ENSLOCG00000012903lsm59786.364Lepisosteus_oculatus
ENSCING00000020625-9988.764ENSLAFG00000029579LSM59888.764Loxodonta_africana
ENSCING00000020625-9767.442ENSLAFG00000027938-9467.442Loxodonta_africana
ENSCING00000020625-9786.047ENSMFAG00000030152-9586.047Macaca_fascicularis
ENSCING00000020625-9988.764ENSMFAG00000038508LSM59888.764Macaca_fascicularis
ENSCING00000020625-5287.234ENSMFAG00000031187-8087.234Macaca_fascicularis
ENSCING00000020625-9786.047ENSMMUG00000030131-9586.047Macaca_mulatta
ENSCING00000020625-9982.022ENSMMUG00000039822-9982.022Macaca_mulatta
ENSCING00000020625-5582.000ENSMMUG00000045129-7882.000Macaca_mulatta
ENSCING00000020625-9988.764ENSMNEG00000015331LSM510090.323Macaca_nemestrina
ENSCING00000020625-9786.047ENSMNEG00000037935-9586.047Macaca_nemestrina
ENSCING00000020625-9980.899ENSMLEG00000034037-10080.899Mandrillus_leucophaeus
ENSCING00000020625-9988.764ENSMLEG00000024945LSM59888.764Mandrillus_leucophaeus
ENSCING00000020625-9981.818ENSMAMG00000012869lsm59781.818Mastacembelus_armatus
ENSCING00000020625-9886.207ENSMZEG00005019554lsm59986.207Maylandia_zebra
ENSCING00000020625-9988.764ENSMGAG00000012117LSM59888.764Meleagris_gallopavo
ENSCING00000020625-9988.764ENSMAUG00000012222Lsm59888.764Mesocricetus_auratus
ENSCING00000020625-9987.640ENSMAUG00000008132-9887.640Mesocricetus_auratus
ENSCING00000020625-9988.764ENSMICG00000005353LSM59888.764Microcebus_murinus
ENSCING00000020625-9968.539ENSMICG00000033928-9568.539Microcebus_murinus
ENSCING00000020625-9988.764ENSMOCG00000012018Lsm59888.764Microtus_ochrogaster
ENSCING00000020625-8586.842ENSMMOG00000004026lsm58786.842Mola_mola
ENSCING00000020625-7090.323ENSMODG00000013274-10090.323Monodelphis_domestica
ENSCING00000020625-7082.258ENSMALG00000010343lsm510082.258Monopterus_albus
ENSCING00000020625-9988.764MGP_CAROLIEiJ_G0028421Lsm59888.764Mus_caroli
ENSCING00000020625-9988.764ENSMUSG00000091625Lsm59888.764Mus_musculus
ENSCING00000020625-9988.764MGP_PahariEiJ_G0022171Lsm59888.764Mus_pahari
ENSCING00000020625-9988.764MGP_SPRETEiJ_G0029423Lsm59888.764Mus_spretus
ENSCING00000020625-9988.764ENSMLUG00000017028LSM59888.764Myotis_lucifugus
ENSCING00000020625-9778.409ENSNGAG00000017707-9478.409Nannospalax_galili
ENSCING00000020625-9988.764ENSNGAG00000024142Lsm59888.764Nannospalax_galili
ENSCING00000020625-9969.663ENSNGAG00000022569-9569.663Nannospalax_galili
ENSCING00000020625-5182.222ENSNBRG00000009964LSM59682.222Neolamprologus_brichardi
ENSCING00000020625-6487.719ENSNBRG00000011386lsm57687.719Neolamprologus_brichardi
ENSCING00000020625-9988.764ENSNLEG00000015268LSM59888.764Nomascus_leucogenys
ENSCING00000020625-8489.333ENSOPRG00000002443LSM510089.333Ochotona_princeps
ENSCING00000020625-9988.764ENSODEG00000019072-9888.764Octodon_degus
ENSCING00000020625-9988.764ENSODEG00000008258-9888.764Octodon_degus
ENSCING00000020625-8461.333ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSCING00000020625-9988.764ENSOCUG00000029043LSM59888.764Oryctolagus_cuniculus
ENSCING00000020625-9784.884ENSORLG00000027725lsm55584.884Oryzias_latipes
ENSCING00000020625-9480.952ENSORLG00020003019lsm58382.500Oryzias_latipes_hni
ENSCING00000020625-9982.955ENSORLG00015003338lsm59782.955Oryzias_latipes_hsok
ENSCING00000020625-9982.955ENSOMEG00000001078lsm59782.955Oryzias_melastigma
ENSCING00000020625-9988.764ENSOGAG00000013892LSM59888.764Otolemur_garnettii
ENSCING00000020625-9988.764ENSOARG00000006944LSM59888.764Ovis_aries
ENSCING00000020625-9988.764ENSPPAG00000003697-9888.764Pan_paniscus
ENSCING00000020625-9988.764ENSPPRG00000002550LSM59888.764Panthera_pardus
ENSCING00000020625-9988.764ENSPTIG00000015604LSM59888.764Panthera_tigris_altaica
ENSCING00000020625-9973.034ENSPTRG00000049488-9877.528Pan_troglodytes
ENSCING00000020625-9988.764ENSPTRG00000019057LSM59888.764Pan_troglodytes
ENSCING00000020625-9988.764ENSPANG00000032179-9888.764Papio_anubis
ENSCING00000020625-9784.884ENSPANG00000033477-9584.884Papio_anubis
ENSCING00000020625-9982.022ENSPANG00000032538-9982.022Papio_anubis
ENSCING00000020625-9985.227ENSPKIG00000011910lsm59785.227Paramormyrops_kingsleyae
ENSCING00000020625-8390.541ENSPSIG00000014796LSM510090.541Pelodiscus_sinensis
ENSCING00000020625-7087.097ENSPMGG00000011699lsm510087.097Periophthalmus_magnuspinnatus
ENSCING00000020625-10065.556ENSPEMG00000022375-9965.556Peromyscus_maniculatus_bairdii
ENSCING00000020625-9787.209ENSPFOG00000001433lsm59587.209Poecilia_formosa
ENSCING00000020625-9787.209ENSPLAG00000009665lsm59587.209Poecilia_latipinna
ENSCING00000020625-9787.209ENSPMEG00000022265lsm59587.209Poecilia_mexicana
ENSCING00000020625-7087.097ENSPREG00000022452lsm510087.097Poecilia_reticulata
ENSCING00000020625-9985.393ENSPPYG00000017661LSM59885.393Pongo_abelii
ENSCING00000020625-8888.608ENSPCAG00000013740LSM59888.608Procavia_capensis
ENSCING00000020625-9988.764ENSPVAG00000009786LSM59888.764Pteropus_vampyrus
ENSCING00000020625-9886.207ENSPNYG00000022236lsm59986.207Pundamilia_nyererei
ENSCING00000020625-9787.209ENSPNAG00000001887lsm59587.209Pygocentrus_nattereri
ENSCING00000020625-9785.057ENSRNOG00000027305AABR07065089.19585.057Rattus_norvegicus
ENSCING00000020625-9988.764ENSRNOG00000042126Lsm59888.764Rattus_norvegicus
ENSCING00000020625-9987.640ENSRBIG00000024431-9887.640Rhinopithecus_bieti
ENSCING00000020625-9988.764ENSRBIG00000030340-9888.764Rhinopithecus_bieti
ENSCING00000020625-9988.764ENSRBIG00000027803-10090.323Rhinopithecus_bieti
ENSCING00000020625-9988.764ENSRBIG00000030714-9888.764Rhinopithecus_bieti
ENSCING00000020625-9988.764ENSRROG00000023884-9888.764Rhinopithecus_roxellana
ENSCING00000020625-9988.764ENSRROG00000042782-10090.323Rhinopithecus_roxellana
ENSCING00000020625-9988.764ENSRROG00000004655-9888.764Rhinopithecus_roxellana
ENSCING00000020625-8746.341YER146W-8846.341Saccharomyces_cerevisiae
ENSCING00000020625-9987.640ENSSBOG00000019124-9887.640Saimiri_boliviensis_boliviensis
ENSCING00000020625-9988.764ENSSBOG00000012312LSM59888.764Saimiri_boliviensis_boliviensis
ENSCING00000020625-9968.539ENSSBOG00000034794-9768.539Saimiri_boliviensis_boliviensis
ENSCING00000020625-9985.227ENSSFOG00015010099lsm59785.227Scleropages_formosus
ENSCING00000020625-5182.222ENSSMAG00000007895lsm57682.222Scophthalmus_maximus
ENSCING00000020625-7087.097ENSSDUG00000010762lsm510087.097Seriola_dumerili
ENSCING00000020625-9985.227ENSSLDG00000025242lsm59785.227Seriola_lalandi_dorsalis
ENSCING00000020625-8772.727ENSSLDG00000008014-9272.727Seriola_lalandi_dorsalis
ENSCING00000020625-9965.169ENSSARG00000003330LSM59865.169Sorex_araneus
ENSCING00000020625-9787.209ENSSPUG00000002690LSM510088.710Sphenodon_punctatus
ENSCING00000020625-5182.222ENSSPAG00000005435lsm57682.222Stegastes_partitus
ENSCING00000020625-9988.764ENSSSCG00000026064-9888.764Sus_scrofa
ENSCING00000020625-5776.471ENSSSCG00000029661-9376.119Sus_scrofa
ENSCING00000020625-10086.813ENSTGUG00000017539LSM510086.813Taeniopygia_guttata
ENSCING00000020625-8780.488ENSTRUG00000017749lsm56480.488Takifugu_rubripes
ENSCING00000020625-9787.209ENSTNIG00000008695lsm59887.209Tetraodon_nigroviridis
ENSCING00000020625-9988.764ENSTBEG00000004876LSM59888.764Tupaia_belangeri
ENSCING00000020625-9988.764ENSTTRG00000004237LSM59888.764Tursiops_truncatus
ENSCING00000020625-5582.000ENSUAMG00000009786LSM56582.000Ursus_americanus
ENSCING00000020625-9889.773ENSUMAG00000002625LSM56389.773Ursus_maritimus
ENSCING00000020625-9988.764ENSVPAG00000009985LSM59888.764Vicugna_pacos
ENSCING00000020625-9988.764ENSVVUG00000021311LSM59888.764Vulpes_vulpes
ENSCING00000020625-8489.333ENSXETG00000026465lsm59189.333Xenopus_tropicalis
ENSCING00000020625-7087.097ENSXCOG00000015348lsm510087.097Xiphophorus_couchianus
ENSCING00000020625-9787.209ENSXMAG00000029988lsm59587.209Xiphophorus_maculatus

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