EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000021080 (Gene tree)
Gene ID: 100178032
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4576 bases
Position: chr11:332844-337419
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000033384	zf-CCCH	PF00642.24	2.5e-21	1	2
ENSCINP00000033384	zf-CCCH	PF00642.24	2.5e-21	2	2
ENSCINP00000033384	zf-CCHC	PF00098.23	3.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000030944	-	1331	-	ENSCINP00000033384	262 (aa)	-	H2XUQ0

Gene Model

Click here to download ENSCING00000021080's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000021080's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000021080	-	97	55.939	ENSG00000160917	CPSF4	99	76.577	Homo_sapiens
ENSCING00000021080	-	63	41.667	ENSAPOG00000004921	cpsf4	95	41.667	Acanthochromis_polyacanthus
ENSCING00000021080	-	97	55.939	ENSAMEG00000006252	CPSF4	97	55.939	Ailuropoda_melanoleuca
ENSCING00000021080	-	97	55.512	ENSACIG00000009248	cpsf4	96	56.299	Amphilophus_citrinellus
ENSCING00000021080	-	97	55.859	ENSAOCG00000019616	cpsf4	97	55.859	Amphiprion_ocellaris
ENSCING00000021080	-	97	55.859	ENSAPEG00000011679	cpsf4	97	55.859	Amphiprion_percula
ENSCING00000021080	-	97	56.107	ENSATEG00000007010	cpsf4	97	54.651	Anabas_testudineus
ENSCING00000021080	-	97	55.000	ENSACAG00000012941	CPSF4	86	55.556	Anolis_carolinensis
ENSCING00000021080	-	97	55.939	ENSANAG00000021360	CPSF4	97	55.939	Aotus_nancymaae
ENSCING00000021080	-	97	56.250	ENSACLG00000010374	cpsf4	96	61.751	Astatotilapia_calliptera
ENSCING00000021080	-	97	56.489	ENSAMXG00000031647	cpsf4	97	55.939	Astyanax_mexicanus
ENSCING00000021080	-	97	55.906	ENSBTAG00000002090	CPSF4	96	56.299	Bos_taurus
ENSCING00000021080	-	97	55.939	ENSCJAG00000015826	CPSF4	97	55.939	Callithrix_jacchus
ENSCING00000021080	-	97	55.939	ENSCAFG00000015036	CPSF4	100	66.864	Canis_familiaris
ENSCING00000021080	-	97	52.874	ENSCAFG00020014462	CPSF4	97	52.874	Canis_lupus_dingo
ENSCING00000021080	-	97	56.489	ENSCHIG00000014313	CPSF4	97	56.489	Capra_hircus
ENSCING00000021080	-	86	50.885	ENSTSYG00000008195	-	95	51.489	Carlito_syrichta
ENSCING00000021080	-	97	56.299	ENSTSYG00000005712	-	96	56.299	Carlito_syrichta
ENSCING00000021080	-	97	50.980	ENSTSYG00000014604	-	96	51.765	Carlito_syrichta
ENSCING00000021080	-	77	53.810	ENSCAPG00000013881	CPSF4	92	50.840	Cavia_aperea
ENSCING00000021080	-	97	56.299	ENSCPOG00000001783	CPSF4	96	56.299	Cavia_porcellus
ENSCING00000021080	-	97	55.939	ENSCCAG00000028291	CPSF4	97	55.939	Cebus_capucinus
ENSCING00000021080	-	97	55.985	ENSCATG00000038440	CPSF4	97	55.939	Cercocebus_atys
ENSCING00000021080	-	97	55.939	ENSCLAG00000007050	CPSF4	97	55.939	Chinchilla_lanigera
ENSCING00000021080	-	97	55.939	ENSCSAG00000017795	CPSF4	97	55.939	Chlorocebus_sabaeus
ENSCING00000021080	-	63	65.060	ENSCPBG00000010269	-	100	65.060	Chrysemys_picta_bellii
ENSCING00000021080	-	76	54.589	ENSCPBG00000020869	CPSF4	95	54.589	Chrysemys_picta_bellii
ENSCING00000021080	-	100	81.724	ENSCSAVG00000011469	-	100	81.724	Ciona_savignyi
ENSCING00000021080	-	97	55.939	ENSCANG00000019384	CPSF4	97	55.939	Colobus_angolensis_palliatus
ENSCING00000021080	-	97	56.299	ENSCGRG00001024184	Cpsf4	96	56.299	Cricetulus_griseus_chok1gshd
ENSCING00000021080	-	97	55.939	ENSCGRG00000013892	Cpsf4	97	55.939	Cricetulus_griseus_crigri
ENSCING00000021080	-	97	55.469	ENSCSEG00000019055	cpsf4	97	55.469	Cynoglossus_semilaevis
ENSCING00000021080	-	96	58.594	ENSCVAG00000016528	cpsf4	96	58.594	Cyprinodon_variegatus
ENSCING00000021080	-	97	53.817	ENSDARG00000020217	cpsf4	97	54.373	Danio_rerio
ENSCING00000021080	-	97	55.939	ENSDNOG00000006344	CPSF4	97	55.939	Dasypus_novemcinctus
ENSCING00000021080	-	76	54.106	ENSDORG00000000742	Cpsf4	95	54.106	Dipodomys_ordii
ENSCING00000021080	-	96	48.399	FBgn0015621	Clp	95	48.043	Drosophila_melanogaster
ENSCING00000021080	-	63	71.515	ENSETEG00000002608	CPSF4	61	71.515	Echinops_telfairi
ENSCING00000021080	-	96	56.917	ENSEBUG00000012552	cpsf4	95	55.952	Eptatretus_burgeri
ENSCING00000021080	-	97	56.299	ENSEASG00005002487	CPSF4	96	56.299	Equus_asinus_asinus
ENSCING00000021080	-	97	55.939	ENSECAG00000007525	CPSF4	97	55.939	Equus_caballus
ENSCING00000021080	-	97	55.303	ENSELUG00000011481	cpsf4	97	54.924	Esox_lucius
ENSCING00000021080	-	97	55.939	ENSFCAG00000015070	CPSF4	97	55.939	Felis_catus
ENSCING00000021080	-	97	55.118	ENSFALG00000013799	CPSF4	96	55.512	Ficedula_albicollis
ENSCING00000021080	-	63	50.289	ENSFALG00000012906	-	100	50.289	Ficedula_albicollis
ENSCING00000021080	-	87	54.043	ENSFDAG00000014092	CPSF4	96	54.043	Fukomys_damarensis
ENSCING00000021080	-	96	57.087	ENSFHEG00000010880	cpsf4	96	57.087	Fundulus_heteroclitus
ENSCING00000021080	-	97	54.688	ENSGMOG00000002330	cpsf4	97	54.651	Gadus_morhua
ENSCING00000021080	-	97	55.118	ENSGALG00000004714	CPSF4	96	55.906	Gallus_gallus
ENSCING00000021080	-	96	56.917	ENSGAFG00000010580	cpsf4	96	57.087	Gambusia_affinis
ENSCING00000021080	-	97	56.977	ENSGACG00000007792	cpsf4	96	56.977	Gasterosteus_aculeatus
ENSCING00000021080	-	97	56.322	ENSGAGG00000021835	CPSF4	97	56.322	Gopherus_agassizii
ENSCING00000021080	-	63	65.455	ENSGAGG00000020579	-	92	65.455	Gopherus_agassizii
ENSCING00000021080	-	97	55.939	ENSGGOG00000015131	CPSF4	97	55.939	Gorilla_gorilla
ENSCING00000021080	-	97	56.250	ENSHBUG00000013699	cpsf4	97	56.250	Haplochromis_burtoni
ENSCING00000021080	-	97	55.682	ENSHGLG00000017150	CPSF4	97	55.894	Heterocephalus_glaber_female
ENSCING00000021080	-	84	52.402	ENSHGLG00100009215	-	96	52.632	Heterocephalus_glaber_male
ENSCING00000021080	-	66	51.149	ENSHGLG00100017302	-	79	51.149	Heterocephalus_glaber_male
ENSCING00000021080	-	96	55.906	ENSHCOG00000004397	cpsf4	96	55.906	Hippocampus_comes
ENSCING00000021080	-	97	56.015	ENSIPUG00000017147	cpsf4	97	55.344	Ictalurus_punctatus
ENSCING00000021080	-	97	55.939	ENSSTOG00000001688	CPSF4	97	55.939	Ictidomys_tridecemlineatus
ENSCING00000021080	-	97	55.939	ENSJJAG00000019426	Cpsf4	97	55.939	Jaculus_jaculus
ENSCING00000021080	-	97	55.078	ENSKMAG00000015642	cpsf4	97	55.078	Kryptolebias_marmoratus
ENSCING00000021080	-	97	55.682	ENSLACG00000010938	CPSF4	97	55.682	Latimeria_chalumnae
ENSCING00000021080	-	97	53.725	ENSLACG00000018470	-	96	54.118	Latimeria_chalumnae
ENSCING00000021080	-	97	55.939	ENSLOCG00000004814	cpsf4	97	55.939	Lepisosteus_oculatus
ENSCING00000021080	-	97	55.939	ENSLAFG00000000159	CPSF4	97	55.939	Loxodonta_africana
ENSCING00000021080	-	97	55.939	ENSMFAG00000001462	CPSF4	97	55.939	Macaca_fascicularis
ENSCING00000021080	-	97	55.939	ENSMMUG00000019191	CPSF4	97	55.939	Macaca_mulatta
ENSCING00000021080	-	97	55.939	ENSMNEG00000032306	CPSF4	97	55.939	Macaca_nemestrina
ENSCING00000021080	-	97	55.985	ENSMLEG00000034721	CPSF4	97	55.939	Mandrillus_leucophaeus
ENSCING00000021080	-	97	56.031	ENSMAMG00000006244	cpsf4	97	55.939	Mastacembelus_armatus
ENSCING00000021080	-	97	56.250	ENSMZEG00005007515	cpsf4	97	56.250	Maylandia_zebra
ENSCING00000021080	-	84	52.273	ENSMGAG00000004235	CPSF4	96	52.273	Meleagris_gallopavo
ENSCING00000021080	-	97	55.939	ENSMAUG00000021253	Cpsf4	97	55.939	Mesocricetus_auratus
ENSCING00000021080	-	97	55.939	ENSMICG00000017429	CPSF4	97	55.939	Microcebus_murinus
ENSCING00000021080	-	97	55.939	ENSMOCG00000014901	Cpsf4	97	55.939	Microtus_ochrogaster
ENSCING00000021080	-	97	56.705	ENSMMOG00000001813	cpsf4	95	67.470	Mola_mola
ENSCING00000021080	-	97	56.322	ENSMODG00000001367	CPSF4	97	56.322	Monodelphis_domestica
ENSCING00000021080	-	97	57.088	ENSMALG00000012611	cpsf4	97	57.198	Monopterus_albus
ENSCING00000021080	-	97	56.299	MGP_CAROLIEiJ_G0028012	Cpsf4	97	55.939	Mus_caroli
ENSCING00000021080	-	97	56.299	ENSMUSG00000029625	Cpsf4	97	55.939	Mus_musculus
ENSCING00000021080	-	97	56.299	MGP_PahariEiJ_G0024581	Cpsf4	97	55.939	Mus_pahari
ENSCING00000021080	-	97	55.939	MGP_SPRETEiJ_G0029013	Cpsf4	97	55.939	Mus_spretus
ENSCING00000021080	-	97	55.939	ENSMPUG00000016508	CPSF4	97	55.939	Mustela_putorius_furo
ENSCING00000021080	-	84	52.727	ENSMLUG00000010980	CPSF4	96	53.182	Myotis_lucifugus
ENSCING00000021080	-	97	55.939	ENSNGAG00000001567	Cpsf4	97	55.939	Nannospalax_galili
ENSCING00000021080	-	88	55.172	ENSNBRG00000003943	cpsf4	94	55.172	Neolamprologus_brichardi
ENSCING00000021080	-	97	57.812	ENSNLEG00000011074	CPSF4	97	57.031	Nomascus_leucogenys
ENSCING00000021080	-	97	56.322	ENSMEUG00000006955	CPSF4	97	56.322	Notamacropus_eugenii
ENSCING00000021080	-	97	55.556	ENSOPRG00000013663	CPSF4	97	55.556	Ochotona_princeps
ENSCING00000021080	-	97	48.031	ENSODEG00000018283	-	88	48.031	Octodon_degus
ENSCING00000021080	-	97	44.574	ENSODEG00000009779	-	96	43.798	Octodon_degus
ENSCING00000021080	-	97	55.939	ENSODEG00000011181	-	97	55.939	Octodon_degus
ENSCING00000021080	-	97	56.250	ENSONIG00000008495	cpsf4	97	56.250	Oreochromis_niloticus
ENSCING00000021080	-	84	54.626	ENSOANG00000007729	CPSF4	96	53.982	Ornithorhynchus_anatinus
ENSCING00000021080	-	97	46.350	ENSOANG00000009568	-	97	44.074	Ornithorhynchus_anatinus
ENSCING00000021080	-	97	55.939	ENSOCUG00000002437	CPSF4	68	55.939	Oryctolagus_cuniculus
ENSCING00000021080	-	97	56.641	ENSORLG00000022798	cpsf4	97	56.641	Oryzias_latipes
ENSCING00000021080	-	97	56.641	ENSORLG00020008548	cpsf4	97	56.641	Oryzias_latipes_hni
ENSCING00000021080	-	97	56.641	ENSORLG00015019575	cpsf4	97	56.641	Oryzias_latipes_hsok
ENSCING00000021080	-	97	55.859	ENSOMEG00000005176	cpsf4	97	55.859	Oryzias_melastigma
ENSCING00000021080	-	97	55.939	ENSOGAG00000010884	CPSF4	97	55.939	Otolemur_garnettii
ENSCING00000021080	-	97	51.504	ENSOARG00000018668	CPSF4	97	51.504	Ovis_aries
ENSCING00000021080	-	97	55.939	ENSPPAG00000043355	CPSF4	97	55.939	Pan_paniscus
ENSCING00000021080	-	97	55.939	ENSPPRG00000003134	CPSF4	97	55.939	Panthera_pardus
ENSCING00000021080	-	87	54.701	ENSPTIG00000005604	CPSF4	87	54.701	Panthera_tigris_altaica
ENSCING00000021080	-	97	55.939	ENSPTRG00000019453	CPSF4	97	55.939	Pan_troglodytes
ENSCING00000021080	-	97	55.939	ENSPANG00000023123	CPSF4	97	55.939	Papio_anubis
ENSCING00000021080	-	97	56.296	ENSPKIG00000014278	cpsf4	97	55.431	Paramormyrops_kingsleyae
ENSCING00000021080	-	76	54.589	ENSPSIG00000011229	CPSF4	95	54.589	Pelodiscus_sinensis
ENSCING00000021080	-	77	50.990	ENSPSIG00000018198	-	94	50.495	Pelodiscus_sinensis
ENSCING00000021080	-	75	55.217	ENSPMGG00000017735	cpsf4	97	55.217	Periophthalmus_magnuspinnatus
ENSCING00000021080	-	97	55.939	ENSPEMG00000004508	Cpsf4	97	55.939	Peromyscus_maniculatus_bairdii
ENSCING00000021080	-	97	56.322	ENSPCIG00000024776	CPSF4	97	56.322	Phascolarctos_cinereus
ENSCING00000021080	-	96	56.917	ENSPFOG00000014912	cpsf4	96	57.087	Poecilia_formosa
ENSCING00000021080	-	96	54.762	ENSPLAG00000009599	cpsf4	96	54.365	Poecilia_latipinna
ENSCING00000021080	-	96	56.917	ENSPMEG00000009790	cpsf4	96	57.087	Poecilia_mexicana
ENSCING00000021080	-	96	58.103	ENSPREG00000018166	cpsf4	96	58.268	Poecilia_reticulata
ENSCING00000021080	-	84	53.097	ENSPPYG00000017378	CPSF4	96	53.097	Pongo_abelii
ENSCING00000021080	-	97	55.939	ENSPCAG00000001892	CPSF4	97	55.939	Procavia_capensis
ENSCING00000021080	-	97	55.939	ENSPCOG00000012771	CPSF4	97	55.303	Propithecus_coquereli
ENSCING00000021080	-	97	52.107	ENSPVAG00000007531	CPSF4	97	52.107	Pteropus_vampyrus
ENSCING00000021080	-	97	56.250	ENSPNYG00000018559	cpsf4	97	56.250	Pundamilia_nyererei
ENSCING00000021080	-	97	56.107	ENSPNAG00000003736	cpsf4	97	56.107	Pygocentrus_nattereri
ENSCING00000021080	-	97	55.906	ENSRNOG00000000985	Cpsf4	96	55.906	Rattus_norvegicus
ENSCING00000021080	-	84	53.540	ENSRBIG00000033886	CPSF4	96	53.540	Rhinopithecus_bieti
ENSCING00000021080	-	97	55.906	ENSRROG00000040431	CPSF4	96	56.299	Rhinopithecus_roxellana
ENSCING00000021080	-	97	55.939	ENSSBOG00000020493	CPSF4	97	55.939	Saimiri_boliviensis_boliviensis
ENSCING00000021080	-	97	56.322	ENSSHAG00000011533	CPSF4	97	56.322	Sarcophilus_harrisii
ENSCING00000021080	-	97	54.682	ENSSFOG00015007883	cpsf4	97	55.056	Scleropages_formosus
ENSCING00000021080	-	97	56.250	ENSSMAG00000006374	cpsf4	96	56.031	Scophthalmus_maximus
ENSCING00000021080	-	97	56.322	ENSSDUG00000018887	cpsf4	97	55.642	Seriola_dumerili
ENSCING00000021080	-	97	56.322	ENSSLDG00000019078	cpsf4	97	55.642	Seriola_lalandi_dorsalis
ENSCING00000021080	-	84	53.540	ENSSARG00000012416	CPSF4	96	53.540	Sorex_araneus
ENSCING00000021080	-	97	55.939	ENSSPUG00000003549	CPSF4	97	55.939	Sphenodon_punctatus
ENSCING00000021080	-	97	52.941	ENSSPUG00000014803	-	100	58.482	Sphenodon_punctatus
ENSCING00000021080	-	97	56.299	ENSSPAG00000006174	cpsf4	96	55.906	Stegastes_partitus
ENSCING00000021080	-	97	55.906	ENSSSCG00000026896	CPSF4	96	56.299	Sus_scrofa
ENSCING00000021080	-	97	54.688	ENSTGUG00000007552	CPSF4	96	55.078	Taeniopygia_guttata
ENSCING00000021080	-	97	55.118	ENSTRUG00000024220	cpsf4	97	55.118	Takifugu_rubripes
ENSCING00000021080	-	97	56.641	ENSTNIG00000006265	cpsf4	97	56.250	Tetraodon_nigroviridis
ENSCING00000021080	-	84	49.115	ENSTBEG00000011406	CPSF4	96	48.908	Tupaia_belangeri
ENSCING00000021080	-	68	70.056	ENSTTRG00000003007	CPSF4	65	71.264	Tursiops_truncatus
ENSCING00000021080	-	68	70.056	ENSUAMG00000008051	CPSF4	67	71.264	Ursus_americanus
ENSCING00000021080	-	97	55.906	ENSUMAG00000009474	CPSF4	96	55.906	Ursus_maritimus
ENSCING00000021080	-	97	56.693	ENSVVUG00000008824	CPSF4	96	56.299	Vulpes_vulpes
ENSCING00000021080	-	96	53.435	ENSXETG00000004641	cpsf4l	96	53.435	Xenopus_tropicalis
ENSCING00000021080	-	97	53.650	ENSXETG00000009892	cpsf4	97	53.875	Xenopus_tropicalis
ENSCING00000021080	-	96	56.917	ENSXCOG00000016040	cpsf4	96	57.087	Xiphophorus_couchianus
ENSCING00000021080	-	96	56.917	ENSXMAG00000024670	cpsf4	96	57.087	Xiphophorus_maculatus