EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000021229 (Gene tree)
Gene ID: 723802
Gene Symbol: ci-zf(matrin)-4
Alias: U1-C|U1C
Full Name: zinc finger protein Ci-ZF(MATRIN)-4
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 369 bases
Position: chrHT000030.1:154181-154549
Accession: 723802
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000035879	zf-U1	PF06220.12	5.6e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000035913	-	369	-	ENSCINP00000035879	122 (aa)	-	Q1RLC9

Gene Model

Click here to download ENSCING00000021229's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000021229's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSG00000124562	SNRPC	97	49.351	Homo_sapiens
ENSCING00000021229	ci-zf(matrin)-4	51	80.645	ENSAMEG00000000963	SNRPC	84	48.026	Ailuropoda_melanoleuca
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSANAG00000019696	-	97	49.351	Aotus_nancymaae
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSANAG00000007843	-	97	49.351	Aotus_nancymaae
ENSCING00000021229	ci-zf(matrin)-4	61	72.727	ENSANAG00000019157	-	97	48.701	Aotus_nancymaae
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSANAG00000019726	-	89	52.414	Aotus_nancymaae
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSBTAG00000024549	SNRPC	97	49.351	Bos_taurus
ENSCING00000021229	ci-zf(matrin)-4	51	82.258	ENSCJAG00000041822	-	86	48.905	Callithrix_jacchus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCJAG00000015321	-	97	49.351	Callithrix_jacchus
ENSCING00000021229	ci-zf(matrin)-4	51	82.258	ENSCAFG00020005758	-	96	48.026	Canis_lupus_dingo
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCAFG00020005945	-	97	49.351	Canis_lupus_dingo
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSCHIG00000012087	-	97	48.701	Capra_hircus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSTSYG00000011216	-	97	49.351	Carlito_syrichta
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCPOG00000008563	SNRPC	97	49.351	Cavia_porcellus
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSCCAG00000036059	-	86	48.052	Cebus_capucinus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCATG00000035787	SNRPC	97	49.351	Cercocebus_atys
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCLAG00000016920	SNRPC	97	49.351	Chinchilla_lanigera
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCPBG00000027142	SNRPC	97	49.351	Chrysemys_picta_bellii
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCANG00000028035	SNRPC	97	49.351	Colobus_angolensis_palliatus
ENSCING00000021229	ci-zf(matrin)-4	61	58.667	ENSCGRG00001021483	-	97	46.429	Cricetulus_griseus_chok1gshd
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSCGRG00001009011	-	75	57.724	Cricetulus_griseus_chok1gshd
ENSCING00000021229	ci-zf(matrin)-4	51	80.645	ENSCGRG00000005005	Snrpc	74	56.198	Cricetulus_griseus_crigri
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSDNOG00000042403	-	54	85.484	Dasypus_novemcinctus
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSDNOG00000034699	-	75	56.911	Dasypus_novemcinctus
ENSCING00000021229	ci-zf(matrin)-4	51	79.032	ENSETEG00000008756	-	61	79.032	Echinops_telfairi
ENSCING00000021229	ci-zf(matrin)-4	61	72.727	ENSETEG00000008268	-	77	56.911	Echinops_telfairi
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSEASG00005021007	SNRPC	97	49.351	Equus_asinus_asinus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSECAG00000026848	SNRPC	97	49.351	Equus_caballus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSFCAG00000044077	-	97	49.351	Felis_catus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSFALG00000003756	SNRPC	97	49.351	Ficedula_albicollis
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSFDAG00000018111	SNRPC	97	49.351	Fukomys_damarensis
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSFHEG00000016667	snrpc	64	79.167	Fundulus_heteroclitus
ENSCING00000021229	ci-zf(matrin)-4	51	82.540	ENSGALG00000002773	SNRPC	97	48.387	Gallus_gallus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSGAGG00000003063	SNRPC	97	49.351	Gopherus_agassizii
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSGGOG00000012499	SNRPC	97	49.351	Gorilla_gorilla
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSHGLG00000013981	SNRPC	97	49.351	Heterocephalus_glaber_female
ENSCING00000021229	ci-zf(matrin)-4	51	82.258	ENSHGLG00000017741	-	85	50.769	Heterocephalus_glaber_female
ENSCING00000021229	ci-zf(matrin)-4	51	82.258	ENSHGLG00100010786	-	85	50.769	Heterocephalus_glaber_male
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSHGLG00100009478	SNRPC	97	49.351	Heterocephalus_glaber_male
ENSCING00000021229	ci-zf(matrin)-4	67	60.396	ENSIPUG00000024851	snrpc	64	59.406	Ictalurus_punctatus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSSTOG00000013786	SNRPC	97	49.351	Ictidomys_tridecemlineatus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSJJAG00000021741	Snrpc	75	57.724	Jaculus_jaculus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSLACG00000013753	SNRPC	84	49.677	Latimeria_chalumnae
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSLAFG00000013534	SNRPC	97	49.351	Loxodonta_africana
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMFAG00000031764	-	97	49.351	Macaca_fascicularis
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMFAG00000030525	-	97	49.351	Macaca_fascicularis
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSMMUG00000039415	-	97	51.724	Macaca_mulatta
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMMUG00000000869	-	97	51.678	Macaca_mulatta
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMNEG00000032731	SNRPC	97	49.351	Macaca_nemestrina
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMLEG00000033916	-	97	49.351	Mandrillus_leucophaeus
ENSCING00000021229	ci-zf(matrin)-4	78	46.154	ENSMLEG00000039724	-	68	40.984	Mandrillus_leucophaeus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMICG00000007339	-	97	49.673	Microcebus_murinus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMICG00000032183	-	75	57.724	Microcebus_murinus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMOCG00000017609	Snrpc	75	57.724	Microtus_ochrogaster
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMODG00000013904	-	97	49.351	Monodelphis_domestica
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	MGP_CAROLIEiJ_G0021308	Snrpc	75	57.724	Mus_caroli
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSMUSG00000024217	Snrpc	75	57.724	Mus_musculus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	MGP_SPRETEiJ_G0022221	-	60	77.778	Mus_spretus
ENSCING00000021229	ci-zf(matrin)-4	51	80.645	ENSMPUG00000003210	SNRPC	96	48.026	Mustela_putorius_furo
ENSCING00000021229	ci-zf(matrin)-4	51	80.645	ENSMLUG00000002488	SNRPC	96	48.026	Myotis_lucifugus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSNGAG00000019686	Snrpc	75	57.724	Nannospalax_galili
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSNLEG00000034810	SNRPC	97	49.351	Nomascus_leucogenys
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSODEG00000017080	-	97	49.351	Octodon_degus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSODEG00000020370	-	97	49.351	Octodon_degus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSODEG00000018985	-	97	49.351	Octodon_degus
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSODEG00000020201	-	97	48.701	Octodon_degus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSOCUG00000026668	-	97	49.351	Oryctolagus_cuniculus
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSOCUG00000023292	-	86	49.635	Oryctolagus_cuniculus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSORLG00020012607	SNRPC	86	52.756	Oryzias_latipes_hni
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSOMEG00000012014	snrpc	73	52.756	Oryzias_melastigma
ENSCING00000021229	ci-zf(matrin)-4	51	83.871	ENSOGAG00000026269	-	75	56.098	Otolemur_garnettii
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSOARG00000010823	SNRPC	97	49.351	Ovis_aries
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPPAG00000043871	SNRPC	97	49.351	Pan_paniscus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPPRG00000008647	-	97	49.351	Panthera_pardus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPTIG00000021867	-	97	49.351	Panthera_tigris_altaica
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPTRG00000018070	SNRPC	97	49.351	Pan_troglodytes
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPANG00000022802	-	97	49.351	Papio_anubis
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPKIG00000003136	snrpc	65	59.406	Paramormyrops_kingsleyae
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPEMG00000010773	Snrpc	75	57.724	Peromyscus_maniculatus_bairdii
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPEMG00000002763	-	97	51.034	Peromyscus_maniculatus_bairdii
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPPYG00000029902	-	63	85.484	Pongo_abelii
ENSCING00000021229	ci-zf(matrin)-4	51	80.645	ENSPCAG00000016885	SNRPC	87	48.026	Procavia_capensis
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSPCOG00000004904	SNRPC	97	49.351	Propithecus_coquereli
ENSCING00000021229	ci-zf(matrin)-4	51	79.032	ENSPVAG00000015597	SNRPC	84	47.368	Pteropus_vampyrus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSRNOG00000000493	Snrpc	75	57.724	Rattus_norvegicus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSRBIG00000014819	-	97	49.351	Rhinopithecus_bieti
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSRBIG00000022998	-	97	48.701	Rhinopithecus_bieti
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSRBIG00000037567	-	97	49.351	Rhinopithecus_bieti
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSRROG00000041300	SNRPC	97	49.351	Rhinopithecus_roxellana
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSSBOG00000031528	-	97	49.351	Saimiri_boliviensis_boliviensis
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSSPUG00000002502	SNRPC	97	49.351	Sphenodon_punctatus
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSSSCG00000001531	SNRPC	97	49.351	Sus_scrofa
ENSCING00000021229	ci-zf(matrin)-4	51	82.258	ENSTGUG00000001773	SNRPC	96	48.366	Taeniopygia_guttata
ENSCING00000021229	ci-zf(matrin)-4	51	85.484	ENSTNIG00000018307	snrpc	97	49.359	Tetraodon_nigroviridis
ENSCING00000021229	ci-zf(matrin)-4	51	79.032	ENSTBEG00000013022	-	77	53.659	Tupaia_belangeri
ENSCING00000021229	ci-zf(matrin)-4	51	80.645	ENSTTRG00000007827	SNRPC	84	48.026	Tursiops_truncatus
ENSCING00000021229	ci-zf(matrin)-4	96	51.007	ENSVVUG00000010467	-	65	55.000	Vulpes_vulpes
ENSCING00000021229	ci-zf(matrin)-4	51	82.258	ENSVVUG00000021947	-	97	48.052	Vulpes_vulpes