EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000021274 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 926 bases
Position: chr12:967138-968063
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000034520	THUMP	PF02926.17	2.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036672	-	849	-	ENSCINP00000034520	283 (aa)	-	H2XXY6

Gene Model

Click here to download ENSCING00000021274's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000021274's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000021274	-	95	32.222	ENSATEG00000004737	thumpd1	78	32.963	Anabas_testudineus
ENSCING00000021274	-	87	31.174	ENSAMXG00000012356	thumpd1	69	31.557	Astyanax_mexicanus
ENSCING00000021274	-	95	30.037	ENSBTAG00000047673	THUMPD1	71	30.037	Bos_taurus
ENSCING00000021274	-	95	30.769	ENSCHIG00000010134	THUMPD1	71	30.769	Capra_hircus
ENSCING00000021274	-	95	30.370	ENSCPOG00000008919	-	75	30.070	Cavia_porcellus
ENSCING00000021274	-	95	30.370	ENSCPOG00000023684	-	75	30.070	Cavia_porcellus
ENSCING00000021274	-	95	30.037	ENSCCAG00000030205	THUMPD1	72	30.037	Cebus_capucinus
ENSCING00000021274	-	100	30.556	ENSCLAG00000016508	THUMPD1	75	30.556	Chinchilla_lanigera
ENSCING00000021274	-	100	30.420	ENSCHOG00000005587	THUMPD1	75	30.420	Choloepus_hoffmanni
ENSCING00000021274	-	94	30.597	ENSCVAG00000014960	thumpd1	77	30.970	Cyprinodon_variegatus
ENSCING00000021274	-	100	30.420	ENSECAG00000005354	THUMPD1	75	30.420	Equus_caballus
ENSCING00000021274	-	95	30.037	ENSEEUG00000011256	THUMPD1	62	30.037	Erinaceus_europaeus
ENSCING00000021274	-	93	31.159	ENSELUG00000013612	thumpd1	61	31.159	Esox_lucius
ENSCING00000021274	-	94	31.343	ENSFHEG00000013319	thumpd1	72	31.716	Fundulus_heteroclitus
ENSCING00000021274	-	95	31.227	ENSGMOG00000003369	thumpd1	79	31.227	Gadus_morhua
ENSCING00000021274	-	95	32.222	ENSGAFG00000011000	thumpd1	79	32.593	Gambusia_affinis
ENSCING00000021274	-	95	30.627	ENSGACG00000019511	thumpd1	77	30.627	Gasterosteus_aculeatus
ENSCING00000021274	-	100	30.070	ENSHGLG00000011001	-	75	30.070	Heterocephalus_glaber_female
ENSCING00000021274	-	100	30.070	ENSHGLG00100016023	THUMPD1	75	30.070	Heterocephalus_glaber_male
ENSCING00000021274	-	87	31.474	ENSIPUG00000012500	thumpd1	59	30.403	Ictalurus_punctatus
ENSCING00000021274	-	95	32.963	ENSLBEG00000009349	thumpd1	77	33.209	Labrus_bergylta
ENSCING00000021274	-	87	31.048	ENSMAMG00000006858	thumpd1	70	31.048	Mastacembelus_armatus
ENSCING00000021274	-	96	31.136	ENSMMOG00000011323	thumpd1	75	31.136	Mola_mola
ENSCING00000021274	-	94	30.224	ENSMODG00000006971	-	68	30.224	Monodelphis_domestica
ENSCING00000021274	-	94	30.597	ENSMODG00000024776	-	69	30.597	Monodelphis_domestica
ENSCING00000021274	-	95	30.741	ENSMALG00000019522	thumpd1	80	30.741	Monopterus_albus
ENSCING00000021274	-	95	30.769	MGP_PahariEiJ_G0013593	Thumpd1	73	30.769	Mus_pahari
ENSCING00000021274	-	100	30.070	ENSNLEG00000012369	THUMPD1	76	30.070	Nomascus_leucogenys
ENSCING00000021274	-	95	30.037	ENSODEG00000012360	THUMPD1	72	30.037	Octodon_degus
ENSCING00000021274	-	95	30.258	ENSONIG00000000146	thumpd1	88	30.627	Oreochromis_niloticus
ENSCING00000021274	-	95	30.037	ENSOCUG00000009895	-	72	30.037	Oryctolagus_cuniculus
ENSCING00000021274	-	95	31.481	ENSORLG00000027557	thumpd1	81	31.481	Oryzias_latipes
ENSCING00000021274	-	95	31.111	ENSORLG00020010206	thumpd1	81	31.111	Oryzias_latipes_hni
ENSCING00000021274	-	95	31.111	ENSORLG00015009581	thumpd1	81	31.111	Oryzias_latipes_hsok
ENSCING00000021274	-	95	30.037	ENSOARG00000013107	THUMPD1	71	30.037	Ovis_aries
ENSCING00000021274	-	87	31.048	ENSPKIG00000014491	thumpd1	71	31.048	Paramormyrops_kingsleyae
ENSCING00000021274	-	97	30.435	ENSPMGG00000014479	thumpd1	90	30.797	Periophthalmus_magnuspinnatus
ENSCING00000021274	-	66	31.217	ENSPMAG00000001389	thumpd1	85	30.890	Petromyzon_marinus
ENSCING00000021274	-	95	31.734	ENSPFOG00000012649	thumpd1	79	32.103	Poecilia_formosa
ENSCING00000021274	-	95	31.481	ENSPLAG00000000137	thumpd1	78	31.852	Poecilia_latipinna
ENSCING00000021274	-	95	31.852	ENSPMEG00000007750	thumpd1	78	32.222	Poecilia_mexicana
ENSCING00000021274	-	96	31.985	ENSPREG00000000144	thumpd1	85	32.353	Poecilia_reticulata
ENSCING00000021274	-	95	30.769	ENSSBOG00000034246	THUMPD1	72	30.769	Saimiri_boliviensis_boliviensis
ENSCING00000021274	-	94	30.970	ENSSMAG00000000723	thumpd1	75	32.090	Scophthalmus_maximus
ENSCING00000021274	-	95	30.000	ENSSDUG00000014502	thumpd1	78	31.481	Seriola_dumerili
ENSCING00000021274	-	95	30.000	ENSSPAG00000006993	thumpd1	78	31.111	Stegastes_partitus
ENSCING00000021274	-	100	30.420	ENSSSCG00000024748	THUMPD1	75	30.420	Sus_scrofa
ENSCING00000021274	-	95	31.481	ENSTRUG00000015656	thumpd1	78	31.852	Takifugu_rubripes
ENSCING00000021274	-	95	31.111	ENSTNIG00000001584	thumpd1	82	31.481	Tetraodon_nigroviridis
ENSCING00000021274	-	95	30.258	ENSTBEG00000005252	THUMPD1	63	30.258	Tupaia_belangeri
ENSCING00000021274	-	95	31.852	ENSXMAG00000026052	thumpd1	79	32.222	Xiphophorus_maculatus