EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000021399 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 12847 bases
Position: chr8:6090220-6103066
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000031943	UPF1_Zn_bind	PF09416.10	3.4e-74	1	1
ENSCINP00000031943	ResIII	PF04851.15	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000031804	-	2527	-	ENSCINP00000031943	836 (aa)	-	H2XQK9

Gene Model

Click here to download ENSCING00000021399's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03013	RNA transport	KEGG
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000021399's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000021399	-	99	78.236	ENSG00000005007	UPF1	78	78.007	Homo_sapiens
ENSCING00000021399	-	99	79.577	ENSAPOG00000023773	upf1	78	79.463	Acanthochromis_polyacanthus
ENSCING00000021399	-	99	78.546	ENSAPOG00000010916	-	77	79.508	Acanthochromis_polyacanthus
ENSCING00000021399	-	99	77.386	ENSAMEG00000011474	UPF1	78	77.133	Ailuropoda_melanoleuca
ENSCING00000021399	-	99	79.460	ENSACIG00000019949	upf1	77	79.695	Amphilophus_citrinellus
ENSCING00000021399	-	91	82.768	ENSACIG00000010985	-	75	82.768	Amphilophus_citrinellus
ENSCING00000021399	-	99	79.577	ENSAOCG00000018519	upf1	78	78.873	Amphiprion_ocellaris
ENSCING00000021399	-	99	78.546	ENSAOCG00000006352	-	77	79.625	Amphiprion_ocellaris
ENSCING00000021399	-	99	79.577	ENSAPEG00000016344	upf1	78	78.873	Amphiprion_percula
ENSCING00000021399	-	99	78.546	ENSAPEG00000006292	-	77	79.625	Amphiprion_percula
ENSCING00000021399	-	99	79.460	ENSATEG00000017867	upf1	76	79.812	Anabas_testudineus
ENSCING00000021399	-	99	78.546	ENSATEG00000016606	-	77	79.508	Anabas_testudineus
ENSCING00000021399	-	91	82.497	ENSAPLG00000009175	UPF1	73	82.497	Anas_platyrhynchos
ENSCING00000021399	-	91	81.081	ENSANAG00000024107	UPF1	70	81.081	Aotus_nancymaae
ENSCING00000021399	-	99	78.571	ENSACLG00000022630	-	77	79.532	Astatotilapia_calliptera
ENSCING00000021399	-	99	79.577	ENSACLG00000007181	upf1	77	79.812	Astatotilapia_calliptera
ENSCING00000021399	-	99	79.484	ENSAMXG00000042187	upf1	77	79.719	Astyanax_mexicanus
ENSCING00000021399	-	99	77.438	ENSBTAG00000020922	UPF1	78	77.438	Bos_taurus
ENSCING00000021399	-	99	55.372	WBGene00004880	smg-2	78	55.372	Caenorhabditis_elegans
ENSCING00000021399	-	99	77.262	ENSCJAG00000019627	UPF1	78	77.036	Callithrix_jacchus
ENSCING00000021399	-	99	77.175	ENSCAFG00000014578	UPF1	78	76.949	Canis_familiaris
ENSCING00000021399	-	99	78.146	ENSCAFG00020012347	UPF1	78	77.918	Canis_lupus_dingo
ENSCING00000021399	-	99	78.416	ENSCHIG00000011018	UPF1	78	78.416	Capra_hircus
ENSCING00000021399	-	91	82.497	ENSTSYG00000008877	UPF1	72	82.497	Carlito_syrichta
ENSCING00000021399	-	91	82.497	ENSCAPG00000005758	UPF1	70	82.497	Cavia_aperea
ENSCING00000021399	-	99	78.935	ENSCPOG00000025463	UPF1	77	78.704	Cavia_porcellus
ENSCING00000021399	-	99	78.236	ENSCCAG00000032175	UPF1	78	78.007	Cebus_capucinus
ENSCING00000021399	-	91	82.497	ENSCATG00000040306	UPF1	72	82.497	Cercocebus_atys
ENSCING00000021399	-	91	82.497	ENSCLAG00000004037	UPF1	74	82.497	Chinchilla_lanigera
ENSCING00000021399	-	99	78.236	ENSCSAG00000005276	UPF1	78	78.236	Chlorocebus_sabaeus
ENSCING00000021399	-	99	78.687	ENSCPBG00000012513	UPF1	77	78.571	Chrysemys_picta_bellii
ENSCING00000021399	-	99	95.294	ENSCSAVG00000006533	-	78	95.294	Ciona_savignyi
ENSCING00000021399	-	91	82.497	ENSCANG00000029819	UPF1	72	82.497	Colobus_angolensis_palliatus
ENSCING00000021399	-	99	78.687	ENSCGRG00001021067	Upf1	79	77.702	Cricetulus_griseus_chok1gshd
ENSCING00000021399	-	91	82.497	ENSCGRG00000013480	Upf1	72	82.497	Cricetulus_griseus_crigri
ENSCING00000021399	-	99	76.319	ENSCSEG00000017239	upf1	78	75.939	Cynoglossus_semilaevis
ENSCING00000021399	-	99	79.484	ENSCSEG00000016159	-	77	79.601	Cynoglossus_semilaevis
ENSCING00000021399	-	99	78.429	ENSCVAG00000010561	upf1	77	79.391	Cyprinodon_variegatus
ENSCING00000021399	-	99	79.484	ENSDARG00000016302	upf1	77	80.070	Danio_rerio
ENSCING00000021399	-	95	80.025	ENSDORG00000009984	Upf1	70	82.497	Dipodomys_ordii
ENSCING00000021399	-	99	70.340	FBgn0030354	Upf1	72	70.340	Drosophila_melanogaster
ENSCING00000021399	-	68	75.459	ENSEBUG00000010069	upf1	95	75.459	Eptatretus_burgeri
ENSCING00000021399	-	99	78.416	ENSEASG00005006549	UPF1	78	78.416	Equus_asinus_asinus
ENSCING00000021399	-	99	78.416	ENSECAG00000010639	UPF1	78	78.416	Equus_caballus
ENSCING00000021399	-	99	78.114	ENSELUG00000012916	-	77	78.929	Esox_lucius
ENSCING00000021399	-	99	79.108	ENSELUG00000020917	upf1	83	79.108	Esox_lucius
ENSCING00000021399	-	99	77.288	ENSFCAG00000009757	UPF1	78	77.288	Felis_catus
ENSCING00000021399	-	91	83.377	ENSFALG00000009312	UPF1	70	83.377	Ficedula_albicollis
ENSCING00000021399	-	91	82.497	ENSFDAG00000014816	UPF1	74	82.497	Fukomys_damarensis
ENSCING00000021399	-	80	87.625	ENSFHEG00000016276	-	68	87.625	Fundulus_heteroclitus
ENSCING00000021399	-	99	78.438	ENSFHEG00000006428	upf1	80	78.788	Fundulus_heteroclitus
ENSCING00000021399	-	99	78.136	ENSGMOG00000007541	upf1	78	78.176	Gadus_morhua
ENSCING00000021399	-	99	78.326	ENSGALG00000003220	UPF1	78	78.096	Gallus_gallus
ENSCING00000021399	-	72	82.450	ENSGAFG00000015443	-	74	82.450	Gambusia_affinis
ENSCING00000021399	-	99	78.429	ENSGAFG00000004831	upf1	77	79.508	Gambusia_affinis
ENSCING00000021399	-	99	79.143	ENSGAGG00000022217	UPF1	77	79.143	Gopherus_agassizii
ENSCING00000021399	-	91	83.681	ENSGGOG00000002608	UPF1	72	83.681	Gorilla_gorilla
ENSCING00000021399	-	99	69.303	ENSHBUG00000014694	upf1	86	68.949	Haplochromis_burtoni
ENSCING00000021399	-	99	78.571	ENSHBUG00000008939	upf1	85	79.532	Haplochromis_burtoni
ENSCING00000021399	-	99	77.262	ENSHGLG00000010900	UPF1	78	77.036	Heterocephalus_glaber_female
ENSCING00000021399	-	91	82.497	ENSHGLG00100005904	UPF1	72	82.497	Heterocephalus_glaber_male
ENSCING00000021399	-	99	78.312	ENSHCOG00000008918	upf1	77	79.157	Hippocampus_comes
ENSCING00000021399	-	99	79.601	ENSIPUG00000005108	UPF1	77	79.836	Ictalurus_punctatus
ENSCING00000021399	-	99	78.236	ENSSTOG00000009196	UPF1	78	78.007	Ictidomys_tridecemlineatus
ENSCING00000021399	-	99	77.879	ENSJJAG00000023151	Upf1	78	77.879	Jaculus_jaculus
ENSCING00000021399	-	99	78.429	ENSKMAG00000004962	upf1	77	79.391	Kryptolebias_marmoratus
ENSCING00000021399	-	99	79.460	ENSLBEG00000014862	upf1	76	79.812	Labrus_bergylta
ENSCING00000021399	-	99	79.138	ENSLBEG00000027848	-	77	79.298	Labrus_bergylta
ENSCING00000021399	-	54	85.746	ENSLACG00000008482	UPF1	64	85.746	Latimeria_chalumnae
ENSCING00000021399	-	99	79.508	ENSLOCG00000002072	upf1	77	79.742	Lepisosteus_oculatus
ENSCING00000021399	-	99	77.350	ENSLAFG00000014963	UPF1	78	77.123	Loxodonta_africana
ENSCING00000021399	-	99	77.968	ENSMFAG00000037748	UPF1	78	77.740	Macaca_fascicularis
ENSCING00000021399	-	99	77.702	ENSMMUG00000023286	UPF1	78	77.702	Macaca_mulatta
ENSCING00000021399	-	99	77.968	ENSMNEG00000000046	UPF1	78	77.740	Macaca_nemestrina
ENSCING00000021399	-	91	82.497	ENSMLEG00000028404	UPF1	74	82.497	Mandrillus_leucophaeus
ENSCING00000021399	-	99	79.812	ENSMAMG00000006229	upf1	76	80.164	Mastacembelus_armatus
ENSCING00000021399	-	99	78.337	ENSMAMG00000006231	-	77	79.298	Mastacembelus_armatus
ENSCING00000021399	-	99	78.571	ENSMZEG00005016386	-	77	79.532	Maylandia_zebra
ENSCING00000021399	-	99	79.577	ENSMZEG00005003489	upf1	76	79.812	Maylandia_zebra
ENSCING00000021399	-	91	81.877	ENSMGAG00000004745	UPF1	74	81.877	Meleagris_gallopavo
ENSCING00000021399	-	91	82.497	ENSMAUG00000011398	Upf1	70	82.497	Mesocricetus_auratus
ENSCING00000021399	-	99	79.371	ENSMICG00000001659	UPF1	78	79.601	Microcebus_murinus
ENSCING00000021399	-	99	77.702	ENSMOCG00000005699	Upf1	78	77.816	Microtus_ochrogaster
ENSCING00000021399	-	99	79.343	ENSMMOG00000007881	upf1	78	79.695	Mola_mola
ENSCING00000021399	-	91	83.029	ENSMMOG00000007537	-	75	83.029	Mola_mola
ENSCING00000021399	-	99	76.464	ENSMODG00000003689	UPF1	78	76.464	Monodelphis_domestica
ENSCING00000021399	-	99	79.577	ENSMALG00000000144	upf1	78	79.930	Monopterus_albus
ENSCING00000021399	-	99	78.880	ENSMALG00000018100	-	77	79.040	Monopterus_albus
ENSCING00000021399	-	99	78.687	MGP_CAROLIEiJ_G0031142	Upf1	78	77.702	Mus_caroli
ENSCING00000021399	-	99	78.687	ENSMUSG00000058301	Upf1	78	77.702	Mus_musculus
ENSCING00000021399	-	99	78.687	MGP_PahariEiJ_G0021607	Upf1	78	77.702	Mus_pahari
ENSCING00000021399	-	99	78.687	MGP_SPRETEiJ_G0032260	Upf1	78	77.702	Mus_spretus
ENSCING00000021399	-	99	78.146	ENSMPUG00000015516	UPF1	78	77.918	Mustela_putorius_furo
ENSCING00000021399	-	99	78.186	ENSMLUG00000012122	UPF1	77	78.186	Myotis_lucifugus
ENSCING00000021399	-	99	77.438	ENSNGAG00000024107	Upf1	78	77.551	Nannospalax_galili
ENSCING00000021399	-	99	74.860	ENSNBRG00000022069	-	74	81.641	Neolamprologus_brichardi
ENSCING00000021399	-	99	79.577	ENSNBRG00000000670	upf1	78	79.812	Neolamprologus_brichardi
ENSCING00000021399	-	91	75.610	ENSNLEG00000006062	UPF1	72	75.610	Nomascus_leucogenys
ENSCING00000021399	-	77	83.077	ENSMEUG00000014146	-	61	83.077	Notamacropus_eugenii
ENSCING00000021399	-	91	78.637	ENSOPRG00000014018	UPF1	73	78.637	Ochotona_princeps
ENSCING00000021399	-	99	78.728	ENSODEG00000012426	UPF1	77	78.613	Octodon_degus
ENSCING00000021399	-	99	78.571	ENSONIG00000012729	-	77	79.532	Oreochromis_niloticus
ENSCING00000021399	-	99	79.577	ENSONIG00000010452	upf1	76	79.812	Oreochromis_niloticus
ENSCING00000021399	-	99	77.463	ENSOANG00000004568	UPF1	78	77.463	Ornithorhynchus_anatinus
ENSCING00000021399	-	99	79.089	ENSORLG00000008453	upf1	77	79.157	Oryzias_latipes
ENSCING00000021399	-	99	79.040	ENSORLG00020014758	upf1	77	79.064	Oryzias_latipes_hni
ENSCING00000021399	-	99	79.040	ENSORLG00015010165	upf1	77	79.064	Oryzias_latipes_hsok
ENSCING00000021399	-	99	78.195	ENSOMEG00000003665	upf1	77	79.015	Oryzias_melastigma
ENSCING00000021399	-	99	78.236	ENSOGAG00000012866	UPF1	78	78.007	Otolemur_garnettii
ENSCING00000021399	-	99	76.906	ENSOARG00000010739	UPF1	81	76.337	Ovis_aries
ENSCING00000021399	-	91	82.497	ENSPPAG00000043884	UPF1	71	82.497	Pan_paniscus
ENSCING00000021399	-	99	77.288	ENSPPRG00000023470	UPF1	78	77.288	Panthera_pardus
ENSCING00000021399	-	91	83.681	ENSPTIG00000010159	UPF1	75	83.681	Panthera_tigris_altaica
ENSCING00000021399	-	99	77.968	ENSPTRG00000010721	UPF1	78	77.740	Pan_troglodytes
ENSCING00000021399	-	99	77.968	ENSPANG00000008847	UPF1	78	77.740	Papio_anubis
ENSCING00000021399	-	99	80.000	ENSPKIG00000006069	upf1	82	79.649	Paramormyrops_kingsleyae
ENSCING00000021399	-	62	83.784	ENSPSIG00000009491	UPF1	68	83.784	Pelodiscus_sinensis
ENSCING00000021399	-	99	79.343	ENSPMGG00000017327	upf1	77	79.577	Periophthalmus_magnuspinnatus
ENSCING00000021399	-	99	77.702	ENSPEMG00000001085	Upf1	78	77.702	Peromyscus_maniculatus_bairdii
ENSCING00000021399	-	99	78.241	ENSPMAG00000001206	upf1	77	78.125	Petromyzon_marinus
ENSCING00000021399	-	99	78.121	ENSPCIG00000006156	UPF1	78	78.121	Phascolarctos_cinereus
ENSCING00000021399	-	99	79.953	ENSPLAG00000018155	-	76	79.695	Poecilia_latipinna
ENSCING00000021399	-	99	78.429	ENSPLAG00000016232	-	77	79.508	Poecilia_latipinna
ENSCING00000021399	-	99	78.337	ENSPMEG00000016319	-	77	79.415	Poecilia_mexicana
ENSCING00000021399	-	99	79.953	ENSPMEG00000011443	-	77	79.812	Poecilia_mexicana
ENSCING00000021399	-	99	78.429	ENSPREG00000011247	-	77	79.508	Poecilia_reticulata
ENSCING00000021399	-	99	79.157	ENSPREG00000009940	upf1	76	79.859	Poecilia_reticulata
ENSCING00000021399	-	99	73.529	ENSPPYG00000009752	UPF1	77	73.529	Pongo_abelii
ENSCING00000021399	-	72	88.889	ENSPCAG00000012962	UPF1	54	88.889	Procavia_capensis
ENSCING00000021399	-	99	77.790	ENSPCOG00000023813	UPF1	78	77.904	Propithecus_coquereli
ENSCING00000021399	-	83	76.808	ENSPVAG00000003183	UPF1	65	76.808	Pteropus_vampyrus
ENSCING00000021399	-	99	79.577	ENSPNYG00000003694	upf1	76	79.812	Pundamilia_nyererei
ENSCING00000021399	-	99	78.571	ENSPNYG00000016731	-	77	79.532	Pundamilia_nyererei
ENSCING00000021399	-	99	79.225	ENSPNAG00000025614	upf1	77	79.601	Pygocentrus_nattereri
ENSCING00000021399	-	99	78.687	ENSRNOG00000020134	Upf1	78	77.702	Rattus_norvegicus
ENSCING00000021399	-	91	79.923	ENSRBIG00000013894	UPF1	71	83.934	Rhinopithecus_bieti
ENSCING00000021399	-	91	82.497	ENSRROG00000040935	UPF1	71	83.934	Rhinopithecus_roxellana
ENSCING00000021399	-	97	55.049	YMR080C	NAM7	79	57.069	Saccharomyces_cerevisiae
ENSCING00000021399	-	91	82.497	ENSSBOG00000023632	UPF1	71	82.497	Saimiri_boliviensis_boliviensis
ENSCING00000021399	-	91	82.285	ENSSHAG00000010499	UPF1	74	82.285	Sarcophilus_harrisii
ENSCING00000021399	-	99	80.000	ENSSFOG00015021095	upf1	77	79.649	Scleropages_formosus
ENSCING00000021399	-	99	79.532	ENSSMAG00000021018	-	77	79.532	Scophthalmus_maximus
ENSCING00000021399	-	99	79.343	ENSSMAG00000005055	upf1	76	79.695	Scophthalmus_maximus
ENSCING00000021399	-	99	78.454	ENSSDUG00000009629	-	77	79.415	Seriola_dumerili
ENSCING00000021399	-	99	79.577	ENSSDUG00000013320	upf1	76	79.930	Seriola_dumerili
ENSCING00000021399	-	99	78.454	ENSSLDG00000006878	-	77	79.415	Seriola_lalandi_dorsalis
ENSCING00000021399	-	99	79.577	ENSSLDG00000020868	upf1	77	79.930	Seriola_lalandi_dorsalis
ENSCING00000021399	-	99	78.497	ENSSPUG00000010538	UPF1	81	78.382	Sphenodon_punctatus
ENSCING00000021399	-	99	76.761	ENSSPAG00000000003	upf1	77	76.995	Stegastes_partitus
ENSCING00000021399	-	99	79.625	ENSSPAG00000011521	-	77	79.742	Stegastes_partitus
ENSCING00000021399	-	99	78.416	ENSSSCG00000039301	UPF1	73	83.681	Sus_scrofa
ENSCING00000021399	-	99	70.721	ENSTGUG00000001057	UPF1	99	73.421	Taeniopygia_guttata
ENSCING00000021399	-	99	79.647	ENSTRUG00000000150	upf1	78	79.882	Takifugu_rubripes
ENSCING00000021399	-	99	79.113	ENSTRUG00000005131	-	77	79.157	Takifugu_rubripes
ENSCING00000021399	-	99	74.168	ENSTTRG00000011544	UPF1	77	74.168	Tursiops_truncatus
ENSCING00000021399	-	99	78.146	ENSUAMG00000007093	UPF1	78	78.146	Ursus_americanus
ENSCING00000021399	-	91	83.681	ENSUMAG00000006652	UPF1	74	84.240	Ursus_maritimus
ENSCING00000021399	-	99	78.146	ENSVVUG00000007797	UPF1	78	77.918	Vulpes_vulpes
ENSCING00000021399	-	88	75.445	ENSXETG00000013602	upf1	72	75.412	Xenopus_tropicalis
ENSCING00000021399	-	99	79.812	ENSXCOG00000015275	-	78	79.812	Xiphophorus_couchianus
ENSCING00000021399	-	91	82.768	ENSXCOG00000005764	-	74	82.768	Xiphophorus_couchianus
ENSCING00000021399	-	99	79.930	ENSXMAG00000001703	-	78	79.930	Xiphophorus_maculatus
ENSCING00000021399	-	99	78.337	ENSXMAG00000002540	-	77	79.415	Xiphophorus_maculatus