EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000021685 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1476 bases
Position: chr8:1258352-1259827
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000031219	RRM_1	PF00076.22	1.4e-14	1	1
ENSCINP00000031219	RRM_3	PF08777.11	3.8e-14	1	1
ENSCINP00000031219	La	PF05383.17	7.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036922	-	1431	-	ENSCINP00000031219	477 (aa)	-	H2XNI6

Gene Model

Click here to download ENSCING00000021685's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000021685's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000021685	-	75	36.420	ENSG00000174720	LARP7	81	36.190	Homo_sapiens
ENSCING00000021685	-	75	36.420	ENSAMEG00000015642	LARP7	74	36.364	Ailuropoda_melanoleuca
ENSCING00000021685	-	74	35.625	ENSAPLG00000012887	LARP7	62	35.758	Anas_platyrhynchos
ENSCING00000021685	-	74	35.625	ENSACAG00000010662	LARP7	59	35.758	Anolis_carolinensis
ENSCING00000021685	-	75	36.420	ENSANAG00000031139	-	71	36.364	Aotus_nancymaae
ENSCING00000021685	-	75	37.037	ENSBTAG00000009632	LARP7	68	36.970	Bos_taurus
ENSCING00000021685	-	75	36.420	ENSCJAG00000003711	LARP7	71	36.364	Callithrix_jacchus
ENSCING00000021685	-	75	37.037	ENSCAFG00000011715	LARP7	74	36.970	Canis_familiaris
ENSCING00000021685	-	75	37.037	ENSCAFG00020017225	LARP7	74	36.970	Canis_lupus_dingo
ENSCING00000021685	-	75	37.037	ENSCHIG00000014163	-	68	36.970	Capra_hircus
ENSCING00000021685	-	68	37.037	ENSTSYG00000006769	-	65	36.970	Carlito_syrichta
ENSCING00000021685	-	75	30.488	ENSCAPG00000009328	LARP7	62	30.769	Cavia_aperea
ENSCING00000021685	-	72	34.247	ENSCHOG00000008967	-	74	34.247	Choloepus_hoffmanni
ENSCING00000021685	-	74	36.875	ENSCPBG00000004919	LARP7	67	36.970	Chrysemys_picta_bellii
ENSCING00000021685	-	74	36.478	ENSCGRG00001025050	-	67	36.970	Cricetulus_griseus_chok1gshd
ENSCING00000021685	-	70	37.500	ENSCGRG00000007642	-	65	37.576	Cricetulus_griseus_crigri
ENSCING00000021685	-	70	36.478	ENSCGRG00000001141	-	63	36.970	Cricetulus_griseus_crigri
ENSCING00000021685	-	80	40.606	ENSCSEG00000009088	larp7	68	40.606	Cynoglossus_semilaevis
ENSCING00000021685	-	75	37.037	ENSDORG00000008896	-	68	36.970	Dipodomys_ordii
ENSCING00000021685	-	78	36.364	ENSEBUG00000013808	larp7	65	36.364	Eptatretus_burgeri
ENSCING00000021685	-	75	37.037	ENSECAG00000000834	LARP7	68	36.970	Equus_caballus
ENSCING00000021685	-	74	38.272	ENSELUG00000015341	larp7	66	38.182	Esox_lucius
ENSCING00000021685	-	77	36.095	ENSFCAG00000031966	LARP7	74	36.970	Felis_catus
ENSCING00000021685	-	74	35.625	ENSFALG00000000972	LARP7	61	35.758	Ficedula_albicollis
ENSCING00000021685	-	75	38.788	ENSFHEG00000021652	larp7	68	38.788	Fundulus_heteroclitus
ENSCING00000021685	-	78	38.418	ENSGMOG00000010536	larp7	68	38.418	Gadus_morhua
ENSCING00000021685	-	74	35.625	ENSGALG00000012048	LARP7	62	35.758	Gallus_gallus
ENSCING00000021685	-	75	38.788	ENSGAFG00000015400	larp7	68	38.788	Gambusia_affinis
ENSCING00000021685	-	75	38.182	ENSGACG00000019618	larp7	72	38.182	Gasterosteus_aculeatus
ENSCING00000021685	-	74	36.875	ENSGAGG00000024520	LARP7	66	36.970	Gopherus_agassizii
ENSCING00000021685	-	75	37.037	ENSHGLG00000002716	LARP7	68	36.970	Heterocephalus_glaber_female
ENSCING00000021685	-	75	37.037	ENSHGLG00100000332	LARP7	68	36.970	Heterocephalus_glaber_male
ENSCING00000021685	-	75	37.037	ENSSTOG00000011789	LARP7	68	36.970	Ictidomys_tridecemlineatus
ENSCING00000021685	-	75	41.212	ENSKMAG00000005057	larp7	69	41.212	Kryptolebias_marmoratus
ENSCING00000021685	-	71	35.849	ENSLOCG00000011608	larp7	63	35.802	Lepisosteus_oculatus
ENSCING00000021685	-	75	36.420	ENSMFAG00000036506	LARP7	54	34.146	Macaca_fascicularis
ENSCING00000021685	-	75	37.037	ENSMICG00000031035	LARP7	68	36.970	Microcebus_murinus
ENSCING00000021685	-	74	36.478	ENSMOCG00000012519	-	78	36.970	Microtus_ochrogaster
ENSCING00000021685	-	66	37.190	ENSMOCG00000015761	-	78	37.190	Microtus_ochrogaster
ENSCING00000021685	-	75	36.420	ENSMODG00000005669	LARP7	66	36.364	Monodelphis_domestica
ENSCING00000021685	-	74	37.107	MGP_CAROLIEiJ_G0025613	-	80	37.576	Mus_caroli
ENSCING00000021685	-	74	37.107	ENSMUSG00000027968	Larp7	78	40.323	Mus_musculus
ENSCING00000021685	-	74	36.478	MGP_PahariEiJ_G0027060	-	77	36.970	Mus_pahari
ENSCING00000021685	-	74	36.478	MGP_SPRETEiJ_G0026566	Larp7	75	36.585	Mus_spretus
ENSCING00000021685	-	75	37.037	ENSMPUG00000008331	-	68	36.970	Mustela_putorius_furo
ENSCING00000021685	-	65	32.773	ENSMLUG00000027214	LARP7	67	34.579	Myotis_lucifugus
ENSCING00000021685	-	75	37.500	ENSNGAG00000007368	-	78	37.576	Nannospalax_galili
ENSCING00000021685	-	75	36.420	ENSNLEG00000016354	LARP7	52	33.962	Nomascus_leucogenys
ENSCING00000021685	-	66	35.000	ENSMEUG00000004739	LARP7	68	35.000	Notamacropus_eugenii
ENSCING00000021685	-	75	37.500	ENSOANG00000009298	LARP7	66	37.576	Ornithorhynchus_anatinus
ENSCING00000021685	-	75	37.037	ENSOGAG00000001643	LARP7	68	36.970	Otolemur_garnettii
ENSCING00000021685	-	75	37.037	ENSOARG00000001809	LARP7	68	36.970	Ovis_aries
ENSCING00000021685	-	75	37.037	ENSPPRG00000023256	LARP7	74	36.970	Panthera_pardus
ENSCING00000021685	-	71	37.037	ENSPTIG00000021146	LARP7	70	36.970	Panthera_tigris_altaica
ENSCING00000021685	-	75	39.394	ENSPKIG00000023484	larp7	73	37.374	Paramormyrops_kingsleyae
ENSCING00000021685	-	73	36.364	ENSPSIG00000014419	LARP7	76	31.050	Pelodiscus_sinensis
ENSCING00000021685	-	74	36.478	ENSPEMG00000013978	-	67	36.970	Peromyscus_maniculatus_bairdii
ENSCING00000021685	-	73	40.244	ENSPMAG00000005362	larp7	61	40.244	Petromyzon_marinus
ENSCING00000021685	-	75	36.420	ENSPCIG00000020284	LARP7	85	31.373	Phascolarctos_cinereus
ENSCING00000021685	-	75	37.576	ENSPFOG00000000265	larp7	69	37.126	Poecilia_formosa
ENSCING00000021685	-	75	37.576	ENSPLAG00000012181	larp7	68	37.576	Poecilia_latipinna
ENSCING00000021685	-	75	37.576	ENSPMEG00000007182	larp7	68	37.576	Poecilia_mexicana
ENSCING00000021685	-	75	37.576	ENSPREG00000019513	larp7	68	37.576	Poecilia_reticulata
ENSCING00000021685	-	76	35.152	ENSPVAG00000000282	LARP7	64	35.152	Pteropus_vampyrus
ENSCING00000021685	-	76	37.356	ENSPNAG00000017554	larp7	69	37.288	Pygocentrus_nattereri
ENSCING00000021685	-	74	36.478	ENSRNOG00000048989	Larp7	67	36.970	Rattus_norvegicus
ENSCING00000021685	-	75	36.420	ENSSBOG00000030886	-	72	36.364	Saimiri_boliviensis_boliviensis
ENSCING00000021685	-	75	36.420	ENSSHAG00000008153	LARP7	70	36.364	Sarcophilus_harrisii
ENSCING00000021685	-	75	38.788	ENSSFOG00015019344	larp7	67	38.788	Scleropages_formosus
ENSCING00000021685	-	75	37.037	ENSSSCG00000009119	LARP7	67	36.970	Sus_scrofa
ENSCING00000021685	-	74	35.625	ENSTGUG00000001804	LARP7	63	35.758	Taeniopygia_guttata
ENSCING00000021685	-	75	37.037	ENSTBEG00000009188	LARP7	63	36.970	Tupaia_belangeri
ENSCING00000021685	-	66	38.843	ENSTTRG00000005233	LARP7	63	38.843	Tursiops_truncatus
ENSCING00000021685	-	75	37.037	ENSUAMG00000000836	LARP7	74	36.970	Ursus_americanus
ENSCING00000021685	-	73	37.037	ENSUMAG00000002263	LARP7	72	36.970	Ursus_maritimus
ENSCING00000021685	-	75	37.037	ENSVPAG00000010502	LARP7	68	36.970	Vicugna_pacos
ENSCING00000021685	-	75	37.037	ENSVVUG00000002274	LARP7	74	36.970	Vulpes_vulpes
ENSCING00000021685	-	76	37.576	ENSXETG00000024097	larp7	93	30.314	Xenopus_tropicalis
ENSCING00000021685	-	75	37.576	ENSXMAG00000008479	larp7	68	37.576	Xiphophorus_maculatus