EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000022134 (Gene tree)
Gene ID: 100180305
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm7
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1436 bases
Position: chr7:947806-949241
Accession: 100180305
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000034615	LSM	PF01423.22	1.8e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000035351	-	679	-	ENSCINP00000034615	99 (aa)	XP_002127828	H2XY81

Gene Model

Click here to download ENSCING00000022134's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03018	RNA degradation	KEGG
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000022134's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000022134	-	97	80.208	ENSG00000130332	LSM7	94	80.435	Homo_sapiens
ENSCING00000022134	-	87	82.558	ENSAPOG00000015573	lsm7	79	81.522	Acanthochromis_polyacanthus
ENSCING00000022134	-	97	80.208	ENSAMEG00000005484	LSM7	93	80.208	Ailuropoda_melanoleuca
ENSCING00000022134	-	96	82.105	ENSACIG00000006498	lsm7	75	82.105	Amphilophus_citrinellus
ENSCING00000022134	-	91	81.111	ENSAOCG00000001077	lsm7	87	80.208	Amphiprion_ocellaris
ENSCING00000022134	-	97	80.208	ENSAPEG00000000694	lsm7	93	80.208	Amphiprion_percula
ENSCING00000022134	-	97	80.208	ENSAPEG00000024447	lsm7	87	80.208	Amphiprion_percula
ENSCING00000022134	-	97	80.208	ENSATEG00000008557	lsm7	93	80.208	Anabas_testudineus
ENSCING00000022134	-	97	75.000	ENSANAG00000022222	-	93	75.000	Aotus_nancymaae
ENSCING00000022134	-	97	80.208	ENSANAG00000037196	-	93	80.208	Aotus_nancymaae
ENSCING00000022134	-	97	81.250	ENSACLG00000021021	lsm7	93	81.250	Astatotilapia_calliptera
ENSCING00000022134	-	97	80.208	ENSAMXG00000037622	lsm7	93	80.208	Astyanax_mexicanus
ENSCING00000022134	-	97	80.208	ENSBTAG00000004521	LSM7	93	80.208	Bos_taurus
ENSCING00000022134	-	96	60.000	WBGene00003081	lsm-7	91	60.000	Caenorhabditis_elegans
ENSCING00000022134	-	53	78.846	ENSCJAG00000039713	-	63	78.846	Callithrix_jacchus
ENSCING00000022134	-	97	80.208	ENSCAFG00000019409	LSM7	93	80.208	Canis_familiaris
ENSCING00000022134	-	97	80.208	ENSCAFG00020018168	LSM7	71	80.208	Canis_lupus_dingo
ENSCING00000022134	-	97	80.208	ENSCHIG00000023663	LSM7	93	80.208	Capra_hircus
ENSCING00000022134	-	69	80.882	ENSCAPG00000014534	LSM7	96	80.882	Cavia_aperea
ENSCING00000022134	-	97	80.208	ENSCPOG00000014025	LSM7	95	80.208	Cavia_porcellus
ENSCING00000022134	-	97	80.208	ENSCCAG00000035456	LSM7	94	80.208	Cebus_capucinus
ENSCING00000022134	-	97	80.208	ENSCATG00000023543	LSM7	93	80.208	Cercocebus_atys
ENSCING00000022134	-	97	80.208	ENSCLAG00000011635	LSM7	93	80.208	Chinchilla_lanigera
ENSCING00000022134	-	97	80.208	ENSCSAG00000011599	LSM7	93	80.208	Chlorocebus_sabaeus
ENSCING00000022134	-	69	82.353	ENSCPBG00000021317	LSM7	73	81.159	Chrysemys_picta_bellii
ENSCING00000022134	-	97	80.208	ENSCANG00000035525	LSM7	93	80.208	Colobus_angolensis_palliatus
ENSCING00000022134	-	97	81.250	ENSCGRG00001000807	-	93	81.250	Cricetulus_griseus_chok1gshd
ENSCING00000022134	-	84	73.494	ENSCGRG00001016005	-	86	73.494	Cricetulus_griseus_chok1gshd
ENSCING00000022134	-	84	73.494	ENSCGRG00000006821	-	86	73.494	Cricetulus_griseus_crigri
ENSCING00000022134	-	97	81.250	ENSCGRG00000014355	-	92	81.250	Cricetulus_griseus_crigri
ENSCING00000022134	-	97	80.208	ENSCSEG00000014900	lsm7	81	80.208	Cynoglossus_semilaevis
ENSCING00000022134	-	97	79.167	ENSCVAG00000021091	lsm7	89	79.167	Cyprinodon_variegatus
ENSCING00000022134	-	97	81.250	ENSDARG00000058328	lsm7	93	81.250	Danio_rerio
ENSCING00000022134	-	97	80.208	ENSDORG00000024460	Lsm7	94	80.208	Dipodomys_ordii
ENSCING00000022134	-	97	71.134	FBgn0261068	LSm7	88	71.134	Drosophila_melanogaster
ENSCING00000022134	-	97	79.167	ENSETEG00000012788	LSM7	94	79.167	Echinops_telfairi
ENSCING00000022134	-	84	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSCING00000022134	-	97	80.208	ENSEBUG00000016992	lsm7	92	80.208	Eptatretus_burgeri
ENSCING00000022134	-	91	82.222	ENSECAG00000001440	LSM7	62	81.250	Equus_caballus
ENSCING00000022134	-	97	80.208	ENSFCAG00000003445	LSM7	93	80.208	Felis_catus
ENSCING00000022134	-	97	80.208	ENSFALG00000011912	LSM7	95	80.208	Ficedula_albicollis
ENSCING00000022134	-	94	81.720	ENSFDAG00000007661	LSM7	97	81.720	Fukomys_damarensis
ENSCING00000022134	-	90	79.775	ENSFHEG00000006349	lsm7	86	79.167	Fundulus_heteroclitus
ENSCING00000022134	-	97	81.250	ENSGMOG00000013320	lsm7	93	81.250	Gadus_morhua
ENSCING00000022134	-	97	79.167	ENSGAFG00000013902	lsm7	93	79.167	Gambusia_affinis
ENSCING00000022134	-	97	81.250	ENSGACG00000010390	lsm7	93	81.250	Gasterosteus_aculeatus
ENSCING00000022134	-	97	80.208	ENSGGOG00000010172	LSM7	93	80.208	Gorilla_gorilla
ENSCING00000022134	-	97	81.250	ENSHBUG00000004616	lsm7	93	81.250	Haplochromis_burtoni
ENSCING00000022134	-	97	80.208	ENSHGLG00000010587	LSM7	93	80.208	Heterocephalus_glaber_female
ENSCING00000022134	-	97	80.208	ENSHGLG00100000852	LSM7	93	80.208	Heterocephalus_glaber_male
ENSCING00000022134	-	97	81.250	ENSHCOG00000020252	lsm7	95	81.250	Hippocampus_comes
ENSCING00000022134	-	98	80.412	ENSIPUG00000024724	lsm7	93	80.208	Ictalurus_punctatus
ENSCING00000022134	-	97	80.208	ENSSTOG00000028372	LSM7	94	80.208	Ictidomys_tridecemlineatus
ENSCING00000022134	-	97	81.250	ENSJJAG00000001936	Lsm7	93	81.250	Jaculus_jaculus
ENSCING00000022134	-	97	79.167	ENSKMAG00000022151	lsm7	93	79.167	Kryptolebias_marmoratus
ENSCING00000022134	-	97	80.208	ENSLBEG00000005203	lsm7	93	80.208	Labrus_bergylta
ENSCING00000022134	-	91	81.111	ENSLACG00000015700	LSM7	93	80.208	Latimeria_chalumnae
ENSCING00000022134	-	97	79.167	ENSLOCG00000004356	lsm7	93	79.167	Lepisosteus_oculatus
ENSCING00000022134	-	97	80.208	ENSLAFG00000029302	LSM7	93	80.208	Loxodonta_africana
ENSCING00000022134	-	97	80.208	ENSMFAG00000044572	LSM7	93	80.208	Macaca_fascicularis
ENSCING00000022134	-	97	80.208	ENSMMUG00000000452	LSM7	94	80.208	Macaca_mulatta
ENSCING00000022134	-	97	80.208	ENSMNEG00000004393	LSM7	93	80.208	Macaca_nemestrina
ENSCING00000022134	-	97	80.208	ENSMLEG00000030852	LSM7	95	80.208	Mandrillus_leucophaeus
ENSCING00000022134	-	97	81.250	ENSMAMG00000005410	lsm7	93	81.250	Mastacembelus_armatus
ENSCING00000022134	-	97	81.250	ENSMZEG00005028055	lsm7	93	81.250	Maylandia_zebra
ENSCING00000022134	-	91	82.222	ENSMGAG00000000750	LSM7	83	81.250	Meleagris_gallopavo
ENSCING00000022134	-	97	81.250	ENSMAUG00000009276	Lsm7	93	81.250	Mesocricetus_auratus
ENSCING00000022134	-	97	80.208	ENSMICG00000009988	-	93	80.208	Microcebus_murinus
ENSCING00000022134	-	97	80.208	ENSMICG00000028619	-	93	80.208	Microcebus_murinus
ENSCING00000022134	-	97	81.250	ENSMOCG00000016925	Lsm7	93	81.250	Microtus_ochrogaster
ENSCING00000022134	-	97	80.208	ENSMMOG00000019645	lsm7	91	80.208	Mola_mola
ENSCING00000022134	-	97	80.208	ENSMODG00000004722	LSM7	93	80.208	Monodelphis_domestica
ENSCING00000022134	-	97	81.250	ENSMALG00000014511	lsm7	74	81.250	Monopterus_albus
ENSCING00000022134	-	97	81.250	MGP_CAROLIEiJ_G0015607	Lsm7	93	81.250	Mus_caroli
ENSCING00000022134	-	97	81.250	ENSMUSG00000035215	Lsm7	93	81.250	Mus_musculus
ENSCING00000022134	-	97	81.250	MGP_PahariEiJ_G0031020	Lsm7	93	81.250	Mus_pahari
ENSCING00000022134	-	97	81.250	MGP_SPRETEiJ_G0016425	Lsm7	93	81.250	Mus_spretus
ENSCING00000022134	-	97	80.208	ENSMLUG00000013097	-	93	80.208	Myotis_lucifugus
ENSCING00000022134	-	99	75.758	ENSMLUG00000024002	-	92	75.758	Myotis_lucifugus
ENSCING00000022134	-	97	81.250	ENSNGAG00000021637	Lsm7	93	81.250	Nannospalax_galili
ENSCING00000022134	-	97	81.250	ENSNBRG00000015770	lsm7	83	81.250	Neolamprologus_brichardi
ENSCING00000022134	-	92	81.319	ENSNBRG00000001237	-	77	81.250	Neolamprologus_brichardi
ENSCING00000022134	-	97	80.208	ENSNLEG00000002265	LSM7	93	80.208	Nomascus_leucogenys
ENSCING00000022134	-	97	61.458	ENSODEG00000008190	-	93	61.458	Octodon_degus
ENSCING00000022134	-	97	80.208	ENSODEG00000013590	-	93	80.208	Octodon_degus
ENSCING00000022134	-	97	72.917	ENSODEG00000018769	-	93	72.917	Octodon_degus
ENSCING00000022134	-	97	81.250	ENSONIG00000001801	lsm7	83	81.250	Oreochromis_niloticus
ENSCING00000022134	-	97	80.208	ENSORLG00000023951	lsm7	93	80.208	Oryzias_latipes
ENSCING00000022134	-	97	80.208	ENSORLG00020022226	lsm7	93	80.208	Oryzias_latipes_hni
ENSCING00000022134	-	97	80.208	ENSORLG00015020044	lsm7	89	80.208	Oryzias_latipes_hsok
ENSCING00000022134	-	97	80.208	ENSOMEG00000012806	lsm7	93	80.208	Oryzias_melastigma
ENSCING00000022134	-	99	72.727	ENSOGAG00000024373	-	97	72.727	Otolemur_garnettii
ENSCING00000022134	-	97	81.250	ENSOGAG00000000144	-	94	81.250	Otolemur_garnettii
ENSCING00000022134	-	97	80.208	ENSOARG00000014013	LSM7	93	80.208	Ovis_aries
ENSCING00000022134	-	97	80.208	ENSPPAG00000026500	LSM7	93	80.208	Pan_paniscus
ENSCING00000022134	-	97	80.208	ENSPPRG00000008624	LSM7	93	80.208	Panthera_pardus
ENSCING00000022134	-	91	81.111	ENSPTIG00000016252	LSM7	93	80.208	Panthera_tigris_altaica
ENSCING00000022134	-	97	80.208	ENSPTRG00000010233	LSM7	93	80.208	Pan_troglodytes
ENSCING00000022134	-	97	80.208	ENSPANG00000020668	LSM7	93	80.208	Papio_anubis
ENSCING00000022134	-	97	80.208	ENSPKIG00000011325	lsm7	93	80.208	Paramormyrops_kingsleyae
ENSCING00000022134	-	91	82.222	ENSPSIG00000017149	LSM7	84	81.250	Pelodiscus_sinensis
ENSCING00000022134	-	97	80.208	ENSPMGG00000006498	lsm7	93	80.208	Periophthalmus_magnuspinnatus
ENSCING00000022134	-	97	80.208	ENSPCIG00000030454	LSM7	94	80.208	Phascolarctos_cinereus
ENSCING00000022134	-	97	79.167	ENSPFOG00000012467	lsm7	85	79.167	Poecilia_formosa
ENSCING00000022134	-	97	79.167	ENSPLAG00000000252	lsm7	89	79.167	Poecilia_latipinna
ENSCING00000022134	-	97	79.167	ENSPMEG00000000587	lsm7	89	79.167	Poecilia_mexicana
ENSCING00000022134	-	77	63.636	ENSPREG00000016718	lsm7	62	63.636	Poecilia_reticulata
ENSCING00000022134	-	97	80.208	ENSPCOG00000017177	LSM7	94	80.208	Propithecus_coquereli
ENSCING00000022134	-	97	81.250	ENSPNYG00000006938	lsm7	93	81.250	Pundamilia_nyererei
ENSCING00000022134	-	97	80.208	ENSPNAG00000010141	lsm7	94	80.208	Pygocentrus_nattereri
ENSCING00000022134	-	97	81.250	ENSRNOG00000019552	Lsm7	93	81.250	Rattus_norvegicus
ENSCING00000022134	-	97	80.208	ENSRBIG00000035978	LSM7	93	80.208	Rhinopithecus_bieti
ENSCING00000022134	-	97	80.208	ENSRROG00000034044	LSM7	93	80.208	Rhinopithecus_roxellana
ENSCING00000022134	-	83	51.765	YNL147W	-	74	51.765	Saccharomyces_cerevisiae
ENSCING00000022134	-	97	80.208	ENSSBOG00000034899	LSM7	93	80.208	Saimiri_boliviensis_boliviensis
ENSCING00000022134	-	97	81.250	ENSSFOG00015006728	lsm7	93	81.250	Scleropages_formosus
ENSCING00000022134	-	97	80.208	ENSSMAG00000004195	lsm7	88	80.208	Scophthalmus_maximus
ENSCING00000022134	-	97	80.208	ENSSDUG00000001863	lsm7	93	80.208	Seriola_dumerili
ENSCING00000022134	-	97	80.208	ENSSLDG00000016339	lsm7	93	80.208	Seriola_lalandi_dorsalis
ENSCING00000022134	-	97	80.208	ENSSPAG00000015221	lsm7	93	80.208	Stegastes_partitus
ENSCING00000022134	-	97	80.208	ENSSSCG00000013463	LSM7	94	80.208	Sus_scrofa
ENSCING00000022134	-	97	80.208	ENSTGUG00000000067	LSM7	95	80.208	Taeniopygia_guttata
ENSCING00000022134	-	97	79.167	ENSTRUG00000022913	lsm7	93	79.167	Takifugu_rubripes
ENSCING00000022134	-	97	79.167	ENSTNIG00000015525	lsm7	93	79.167	Tetraodon_nigroviridis
ENSCING00000022134	-	68	71.642	ENSTBEG00000016602	LSM7	96	71.642	Tupaia_belangeri
ENSCING00000022134	-	97	80.208	ENSUAMG00000000912	LSM7	80	80.208	Ursus_americanus
ENSCING00000022134	-	91	81.111	ENSUMAG00000006556	LSM7	75	80.208	Ursus_maritimus
ENSCING00000022134	-	69	80.882	ENSVVUG00000002640	LSM7	62	80.882	Vulpes_vulpes
ENSCING00000022134	-	97	82.292	ENSXETG00000022166	lsm7	95	82.292	Xenopus_tropicalis
ENSCING00000022134	-	91	80.000	ENSXCOG00000002572	lsm7	94	79.167	Xiphophorus_couchianus
ENSCING00000022134	-	97	79.167	ENSXMAG00000018630	lsm7	93	79.167	Xiphophorus_maculatus